Experiment: PBS control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5023.1 and Xcc-8004.5024.1 are separated by 87 nucleotides Xcc-8004.5024.1 and Xcc-8004.5025.1 are separated by 196 nucleotides Xcc-8004.5025.1 and Xcc-8004.5026.1 are separated by 251 nucleotides Xcc-8004.5026.1 and Xcc-8004.5027.1 are separated by 196 nucleotides
Xcc-8004.5023.1: Xcc-8004.5023.1 - Porphobilinogen synthase (EC 4.2.1.24), at 4,760,915 to 4,761,904
Xcc-8004.5023.1
Xcc-8004.5024.1: Xcc-8004.5024.1 - FIG01210241: hypothetical protein, at 4,761,992 to 4,762,240
Xcc-8004.5024.1
Xcc-8004.5025.1: Xcc-8004.5025.1 - FIG01211797: hypothetical protein, at 4,762,437 to 4,762,889
Xcc-8004.5025.1
Xcc-8004.5026.1: Xcc-8004.5026.1 - putative; ORF located using Glimmer/Genemark, at 4,763,141 to 4,763,494
Xcc-8004.5026.1
Xcc-8004.5027.1: Xcc-8004.5027.1 - FIG01211910: hypothetical protein, at 4,763,691 to 4,765,532
Xcc-8004.5027.1
Position (kb) 4762
4763 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4761.935 kb on - strand at 4762.096 kb on + strand, within Xcc-8004.5024.1 at 4762.096 kb on + strand, within Xcc-8004.5024.1 at 4762.096 kb on + strand, within Xcc-8004.5024.1 at 4762.096 kb on + strand, within Xcc-8004.5024.1 at 4762.096 kb on + strand, within Xcc-8004.5024.1 at 4762.097 kb on - strand, within Xcc-8004.5024.1 at 4762.097 kb on - strand, within Xcc-8004.5024.1 at 4762.180 kb on + strand, within Xcc-8004.5024.1 at 4762.181 kb on - strand, within Xcc-8004.5024.1 at 4762.259 kb on + strand at 4762.259 kb on + strand at 4762.259 kb on + strand at 4762.259 kb on + strand at 4762.259 kb on + strand at 4762.259 kb on + strand at 4762.259 kb on + strand at 4762.259 kb on + strand at 4762.259 kb on + strand at 4762.259 kb on + strand at 4762.259 kb on + strand at 4762.260 kb on - strand at 4762.260 kb on - strand at 4762.260 kb on - strand at 4762.260 kb on - strand at 4762.260 kb on - strand at 4762.260 kb on - strand at 4762.260 kb on - strand at 4762.357 kb on + strand at 4762.358 kb on - strand at 4762.358 kb on - strand at 4762.535 kb on - strand, within Xcc-8004.5025.1 at 4762.557 kb on + strand, within Xcc-8004.5025.1 at 4762.557 kb on + strand, within Xcc-8004.5025.1 at 4762.557 kb on + strand, within Xcc-8004.5025.1 at 4762.557 kb on + strand, within Xcc-8004.5025.1 at 4762.557 kb on + strand, within Xcc-8004.5025.1 at 4762.557 kb on + strand, within Xcc-8004.5025.1 at 4762.558 kb on - strand, within Xcc-8004.5025.1 at 4762.558 kb on - strand, within Xcc-8004.5025.1 at 4762.558 kb on - strand, within Xcc-8004.5025.1 at 4762.558 kb on - strand, within Xcc-8004.5025.1 at 4762.558 kb on - strand, within Xcc-8004.5025.1 at 4762.711 kb on + strand, within Xcc-8004.5025.1 at 4762.712 kb on - strand, within Xcc-8004.5025.1 at 4762.758 kb on + strand, within Xcc-8004.5025.1 at 4762.823 kb on + strand, within Xcc-8004.5025.1 at 4762.823 kb on + strand, within Xcc-8004.5025.1 at 4762.824 kb on - strand, within Xcc-8004.5025.1 at 4762.914 kb on + strand at 4762.915 kb on - strand at 4762.915 kb on - strand at 4762.937 kb on + strand at 4762.937 kb on + strand at 4762.937 kb on + strand at 4762.937 kb on + strand at 4762.937 kb on + strand at 4762.937 kb on + strand at 4762.937 kb on + strand at 4762.938 kb on - strand at 4762.938 kb on - strand at 4762.938 kb on - strand at 4762.938 kb on - strand at 4762.941 kb on + strand at 4762.941 kb on + strand at 4762.958 kb on + strand at 4762.959 kb on - strand at 4763.023 kb on + strand at 4763.023 kb on + strand at 4763.023 kb on + strand at 4763.023 kb on + strand at 4763.023 kb on + strand at 4763.023 kb on + strand at 4763.024 kb on - strand at 4763.024 kb on - strand at 4763.024 kb on - strand at 4763.091 kb on + strand at 4763.092 kb on - strand at 4763.092 kb on - strand at 4763.092 kb on - strand at 4763.092 kb on - strand at 4763.092 kb on - strand at 4763.092 kb on - strand at 4763.092 kb on - strand at 4763.129 kb on + strand at 4763.129 kb on + strand at 4763.129 kb on + strand at 4763.129 kb on + strand at 4763.129 kb on + strand at 4763.130 kb on - strand at 4763.130 kb on - strand at 4763.130 kb on - strand at 4763.130 kb on - strand at 4763.130 kb on - strand at 4763.130 kb on - strand at 4763.130 kb on - strand at 4763.136 kb on + strand at 4763.136 kb on + strand at 4763.136 kb on + strand at 4763.136 kb on + strand at 4763.136 kb on + strand at 4763.154 kb on + strand at 4763.154 kb on + strand at 4763.155 kb on - strand at 4763.155 kb on - strand at 4763.223 kb on + strand, within Xcc-8004.5026.1 at 4763.223 kb on + strand, within Xcc-8004.5026.1 at 4763.224 kb on - strand, within Xcc-8004.5026.1 at 4763.224 kb on - strand, within Xcc-8004.5026.1 at 4763.224 kb on - strand, within Xcc-8004.5026.1 at 4763.316 kb on + strand, within Xcc-8004.5026.1 at 4763.316 kb on + strand, within Xcc-8004.5026.1 at 4763.316 kb on + strand, within Xcc-8004.5026.1 at 4763.316 kb on + strand, within Xcc-8004.5026.1 at 4763.317 kb on - strand, within Xcc-8004.5026.1 at 4763.333 kb on + strand, within Xcc-8004.5026.1 at 4763.359 kb on + strand, within Xcc-8004.5026.1 at 4763.366 kb on + strand, within Xcc-8004.5026.1 at 4763.366 kb on + strand, within Xcc-8004.5026.1 at 4763.367 kb on - strand, within Xcc-8004.5026.1 at 4763.367 kb on - strand, within Xcc-8004.5026.1 at 4763.403 kb on - strand, within Xcc-8004.5026.1 at 4763.411 kb on + strand, within Xcc-8004.5026.1 at 4763.411 kb on + strand, within Xcc-8004.5026.1 at 4763.411 kb on + strand, within Xcc-8004.5026.1 at 4763.412 kb on - strand, within Xcc-8004.5026.1 at 4763.534 kb on + strand at 4763.535 kb on - strand at 4763.553 kb on + strand at 4763.553 kb on + strand at 4763.553 kb on + strand at 4763.553 kb on + strand at 4763.553 kb on + strand at 4763.553 kb on + strand at 4763.553 kb on + strand at 4763.554 kb on - strand at 4763.554 kb on - strand at 4763.554 kb on - strand at 4763.556 kb on + strand at 4763.556 kb on + strand at 4763.556 kb on + strand at 4763.556 kb on + strand at 4763.556 kb on + strand at 4763.556 kb on + strand at 4763.556 kb on + strand at 4763.556 kb on + strand at 4763.556 kb on + strand at 4763.556 kb on + strand at 4763.557 kb on - strand at 4763.557 kb on - strand at 4763.557 kb on - strand at 4763.557 kb on - strand at 4763.557 kb on - strand at 4763.557 kb on - strand at 4763.557 kb on - strand at 4763.557 kb on - strand at 4763.557 kb on - strand at 4763.642 kb on + strand at 4763.642 kb on + strand at 4763.643 kb on - strand at 4763.643 kb on - strand at 4763.643 kb on - strand at 4763.643 kb on - strand at 4763.643 kb on - strand at 4763.643 kb on - strand at 4763.652 kb on + strand at 4763.652 kb on + strand at 4763.653 kb on - strand at 4763.726 kb on + strand at 4763.726 kb on + strand at 4763.726 kb on + strand at 4763.726 kb on + strand at 4763.727 kb on - strand at 4763.727 kb on - strand at 4763.727 kb on - strand at 4763.885 kb on - strand, within Xcc-8004.5027.1
Per-strain Table
Position Strand Gene LocusTag Fraction PBS control remove 4,761,935 - +0.8 4,762,096 + Xcc-8004.5024.1 0.42 +0.3 4,762,096 + Xcc-8004.5024.1 0.42 -0.6 4,762,096 + Xcc-8004.5024.1 0.42 +1.3 4,762,096 + Xcc-8004.5024.1 0.42 -0.5 4,762,096 + Xcc-8004.5024.1 0.42 +1.3 4,762,097 - Xcc-8004.5024.1 0.42 -0.9 4,762,097 - Xcc-8004.5024.1 0.42 +0.2 4,762,180 + Xcc-8004.5024.1 0.76 -0.2 4,762,181 - Xcc-8004.5024.1 0.76 -0.8 4,762,259 + -0.5 4,762,259 + +1.1 4,762,259 + +0.5 4,762,259 + -0.2 4,762,259 + -0.8 4,762,259 + -2.0 4,762,259 + -1.6 4,762,259 + +1.0 4,762,259 + -1.7 4,762,259 + -2.0 4,762,259 + +0.6 4,762,260 - +0.7 4,762,260 - +0.4 4,762,260 - +0.3 4,762,260 - +0.1 4,762,260 - +0.3 4,762,260 - +0.1 4,762,260 - -0.4 4,762,357 + +0.3 4,762,358 - -1.5 4,762,358 - -0.2 4,762,535 - Xcc-8004.5025.1 0.22 -1.6 4,762,557 + Xcc-8004.5025.1 0.26 -1.1 4,762,557 + Xcc-8004.5025.1 0.26 -1.2 4,762,557 + Xcc-8004.5025.1 0.26 +0.3 4,762,557 + Xcc-8004.5025.1 0.26 -0.6 4,762,557 + Xcc-8004.5025.1 0.26 -0.5 4,762,557 + Xcc-8004.5025.1 0.26 -1.1 4,762,558 - Xcc-8004.5025.1 0.27 -0.0 4,762,558 - Xcc-8004.5025.1 0.27 +0.8 4,762,558 - Xcc-8004.5025.1 0.27 +1.3 4,762,558 - Xcc-8004.5025.1 0.27 -0.7 4,762,558 - Xcc-8004.5025.1 0.27 -0.6 4,762,711 + Xcc-8004.5025.1 0.60 +0.3 4,762,712 - Xcc-8004.5025.1 0.61 -0.7 4,762,758 + Xcc-8004.5025.1 0.71 -0.4 4,762,823 + Xcc-8004.5025.1 0.85 -0.1 4,762,823 + Xcc-8004.5025.1 0.85 +0.4 4,762,824 - Xcc-8004.5025.1 0.85 -0.7 4,762,914 + +0.3 4,762,915 - +1.1 4,762,915 - +0.6 4,762,937 + +0.6 4,762,937 + +0.4 4,762,937 + +1.8 4,762,937 + -0.4 4,762,937 + -0.4 4,762,937 + +1.0 4,762,937 + -0.0 4,762,938 - +0.4 4,762,938 - -0.1 4,762,938 - +0.5 4,762,938 - -1.2 4,762,941 + +1.6 4,762,941 + -0.3 4,762,958 + -0.9 4,762,959 - -0.7 4,763,023 + +0.3 4,763,023 + -0.5 4,763,023 + -0.8 4,763,023 + -0.3 4,763,023 + +0.1 4,763,023 + -0.7 4,763,024 - -0.3 4,763,024 - +0.9 4,763,024 - -0.3 4,763,091 + +0.5 4,763,092 - +0.1 4,763,092 - +0.2 4,763,092 - +1.4 4,763,092 - +0.2 4,763,092 - -2.7 4,763,092 - +0.4 4,763,092 - +0.0 4,763,129 + -2.6 4,763,129 + +0.3 4,763,129 + -1.5 4,763,129 + -1.4 4,763,129 + +0.0 4,763,130 - -0.0 4,763,130 - -0.9 4,763,130 - +0.6 4,763,130 - +0.3 4,763,130 - +0.3 4,763,130 - -0.7 4,763,130 - +0.4 4,763,136 + +0.8 4,763,136 + -0.8 4,763,136 + -1.5 4,763,136 + -0.3 4,763,136 + +0.1 4,763,154 + +0.6 4,763,154 + -0.1 4,763,155 - +1.1 4,763,155 - -0.0 4,763,223 + Xcc-8004.5026.1 0.23 -0.3 4,763,223 + Xcc-8004.5026.1 0.23 -0.3 4,763,224 - Xcc-8004.5026.1 0.23 -0.7 4,763,224 - Xcc-8004.5026.1 0.23 +1.1 4,763,224 - Xcc-8004.5026.1 0.23 -0.2 4,763,316 + Xcc-8004.5026.1 0.49 +0.0 4,763,316 + Xcc-8004.5026.1 0.49 -0.5 4,763,316 + Xcc-8004.5026.1 0.49 -1.7 4,763,316 + Xcc-8004.5026.1 0.49 -0.5 4,763,317 - Xcc-8004.5026.1 0.50 -0.5 4,763,333 + Xcc-8004.5026.1 0.54 -0.2 4,763,359 + Xcc-8004.5026.1 0.62 -0.7 4,763,366 + Xcc-8004.5026.1 0.64 +0.4 4,763,366 + Xcc-8004.5026.1 0.64 -0.5 4,763,367 - Xcc-8004.5026.1 0.64 -2.0 4,763,367 - Xcc-8004.5026.1 0.64 +2.0 4,763,403 - Xcc-8004.5026.1 0.74 -0.2 4,763,411 + Xcc-8004.5026.1 0.76 +0.3 4,763,411 + Xcc-8004.5026.1 0.76 +0.3 4,763,411 + Xcc-8004.5026.1 0.76 -0.7 4,763,412 - Xcc-8004.5026.1 0.77 -0.7 4,763,534 + -0.6 4,763,535 - +0.6 4,763,553 + -0.6 4,763,553 + +2.6 4,763,553 + -0.5 4,763,553 + -0.2 4,763,553 + -0.7 4,763,553 + -0.4 4,763,553 + +0.4 4,763,554 - -1.0 4,763,554 - +1.2 4,763,554 - -0.7 4,763,556 + +0.5 4,763,556 + -1.2 4,763,556 + -0.4 4,763,556 + -0.9 4,763,556 + +0.0 4,763,556 + -1.0 4,763,556 + -1.0 4,763,556 + -0.0 4,763,556 + +1.0 4,763,556 + +0.8 4,763,557 - +0.5 4,763,557 - -0.6 4,763,557 - -0.7 4,763,557 - -0.2 4,763,557 - -1.0 4,763,557 - -0.7 4,763,557 - +0.5 4,763,557 - -1.2 4,763,557 - +0.3 4,763,642 + +1.4 4,763,642 + -0.1 4,763,643 - -0.5 4,763,643 - -0.9 4,763,643 - +0.6 4,763,643 - -0.9 4,763,643 - +1.1 4,763,643 - +1.5 4,763,652 + -0.7 4,763,652 + -0.5 4,763,653 - -2.3 4,763,726 + +0.4 4,763,726 + -0.9 4,763,726 + -0.9 4,763,726 + +0.1 4,763,727 - +0.3 4,763,727 - -0.7 4,763,727 - -0.3 4,763,885 - Xcc-8004.5027.1 0.11 -0.1
Or see this region's nucleotide sequence