Experiment: PBS control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4454.1 and Xcc-8004.4455.1 are separated by 701 nucleotides Xcc-8004.4455.1 and Xcc-8004.4456.1 overlap by 4 nucleotides Xcc-8004.4456.1 and Xcc-8004.4457.1 overlap by 4 nucleotides
Xcc-8004.4454.1: Xcc-8004.4454.1 - Pectate lyase precursor (EC 4.2.2.2), at 4,270,771 to 4,271,904
Xcc-8004.4454.1
Xcc-8004.4455.1: Xcc-8004.4455.1 - Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-), at 4,272,606 to 4,273,088
Xcc-8004.4455.1
Xcc-8004.4456.1: Xcc-8004.4456.1 - FIG01209676: hypothetical protein, at 4,273,085 to 4,273,552
Xcc-8004.4456.1
Xcc-8004.4457.1: Xcc-8004.4457.1 - CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8), at 4,273,549 to 4,274,313
Xcc-8004.4457.1
Position (kb) 4272
4273
4274 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4271.628 kb on - strand, within Xcc-8004.4454.1 at 4271.738 kb on + strand, within Xcc-8004.4454.1 at 4271.738 kb on + strand, within Xcc-8004.4454.1 at 4271.739 kb on - strand, within Xcc-8004.4454.1 at 4271.742 kb on + strand, within Xcc-8004.4454.1 at 4271.923 kb on + strand at 4271.924 kb on - strand at 4271.976 kb on + strand at 4272.041 kb on - strand at 4272.475 kb on + strand at 4272.475 kb on + strand at 4272.476 kb on - strand at 4272.520 kb on - strand at 4272.677 kb on - strand, within Xcc-8004.4455.1 at 4272.677 kb on - strand, within Xcc-8004.4455.1 at 4272.722 kb on - strand, within Xcc-8004.4455.1 at 4272.722 kb on - strand, within Xcc-8004.4455.1 at 4272.722 kb on - strand, within Xcc-8004.4455.1 at 4272.722 kb on - strand, within Xcc-8004.4455.1 at 4272.722 kb on - strand, within Xcc-8004.4455.1 at 4272.905 kb on - strand, within Xcc-8004.4455.1 at 4273.614 kb on - strand at 4273.614 kb on - strand at 4273.614 kb on - strand at 4273.614 kb on - strand at 4273.614 kb on - strand at 4273.806 kb on - strand, within Xcc-8004.4457.1 at 4273.974 kb on - strand, within Xcc-8004.4457.1 at 4273.974 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1 at 4274.049 kb on - strand, within Xcc-8004.4457.1
Per-strain Table
Position Strand Gene LocusTag Fraction PBS control remove 4,271,628 - Xcc-8004.4454.1 0.76 -0.1 4,271,738 + Xcc-8004.4454.1 0.85 +0.3 4,271,738 + Xcc-8004.4454.1 0.85 +1.2 4,271,739 - Xcc-8004.4454.1 0.85 -0.4 4,271,742 + Xcc-8004.4454.1 0.86 -1.0 4,271,923 + -0.3 4,271,924 - -2.9 4,271,976 + +1.0 4,272,041 - -0.9 4,272,475 + -0.3 4,272,475 + -0.8 4,272,476 - +1.0 4,272,520 - -0.4 4,272,677 - Xcc-8004.4455.1 0.15 -0.8 4,272,677 - Xcc-8004.4455.1 0.15 -1.7 4,272,722 - Xcc-8004.4455.1 0.24 +0.2 4,272,722 - Xcc-8004.4455.1 0.24 -1.8 4,272,722 - Xcc-8004.4455.1 0.24 -0.6 4,272,722 - Xcc-8004.4455.1 0.24 +0.6 4,272,722 - Xcc-8004.4455.1 0.24 -0.7 4,272,905 - Xcc-8004.4455.1 0.62 +0.3 4,273,614 - -0.4 4,273,614 - -2.4 4,273,614 - -0.5 4,273,614 - -0.8 4,273,614 - -1.7 4,273,806 - Xcc-8004.4457.1 0.34 -0.6 4,273,974 - Xcc-8004.4457.1 0.56 -0.6 4,273,974 - Xcc-8004.4457.1 0.56 -1.2 4,274,049 - Xcc-8004.4457.1 0.65 -1.8 4,274,049 - Xcc-8004.4457.1 0.65 +1.1 4,274,049 - Xcc-8004.4457.1 0.65 -0.0 4,274,049 - Xcc-8004.4457.1 0.65 -2.0 4,274,049 - Xcc-8004.4457.1 0.65 -0.8 4,274,049 - Xcc-8004.4457.1 0.65 -1.2 4,274,049 - Xcc-8004.4457.1 0.65 -1.4 4,274,049 - Xcc-8004.4457.1 0.65 +0.8
Or see this region's nucleotide sequence