Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.364.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.363.1 and Xcc-8004.364.1 overlap by 11 nucleotidesXcc-8004.364.1 and Xcc-8004.365.1 are separated by 312 nucleotides Xcc-8004.363.1: Xcc-8004.363.1 - Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44), at 347,315 to 348,571 Xcc-8004.363.1 Xcc-8004.364.1: Xcc-8004.364.1 - hypothetical protein, at 348,561 to 349,832 Xcc-8004.364.1 Xcc-8004.365.1: Xcc-8004.365.1 - Transcriptional regulator, LysR family, at 350,145 to 351,038 Xcc-8004.365.1 Position (kb) 348 349 350Strain fitness (log2 ratio) -2 -1 0 1 2at 347.815 kb on - strand, within Xcc-8004.363.1at 347.815 kb on - strand, within Xcc-8004.363.1at 347.815 kb on - strand, within Xcc-8004.363.1at 348.038 kb on + strand, within Xcc-8004.363.1at 348.038 kb on + strand, within Xcc-8004.363.1at 348.039 kb on - strand, within Xcc-8004.363.1at 348.039 kb on - strand, within Xcc-8004.363.1at 348.039 kb on - strand, within Xcc-8004.363.1at 348.042 kb on + strand, within Xcc-8004.363.1at 348.043 kb on - strand, within Xcc-8004.363.1at 348.077 kb on + strand, within Xcc-8004.363.1at 348.078 kb on - strand, within Xcc-8004.363.1at 348.078 kb on - strand, within Xcc-8004.363.1at 348.393 kb on + strand, within Xcc-8004.363.1at 348.417 kb on + strand, within Xcc-8004.363.1at 348.417 kb on + strand, within Xcc-8004.363.1at 348.417 kb on + strand, within Xcc-8004.363.1at 348.417 kb on + strand, within Xcc-8004.363.1at 348.417 kb on + strand, within Xcc-8004.363.1at 348.417 kb on + strand, within Xcc-8004.363.1at 348.417 kb on + strand, within Xcc-8004.363.1at 348.418 kb on - strand, within Xcc-8004.363.1at 348.418 kb on - strand, within Xcc-8004.363.1at 348.418 kb on - strand, within Xcc-8004.363.1at 348.418 kb on - strand, within Xcc-8004.363.1at 348.418 kb on - strand, within Xcc-8004.363.1at 348.418 kb on - strand, within Xcc-8004.363.1at 348.418 kb on - strand, within Xcc-8004.363.1at 349.284 kb on + strand, within Xcc-8004.364.1at 349.285 kb on - strand, within Xcc-8004.364.1at 349.285 kb on - strand, within Xcc-8004.364.1at 349.535 kb on - strand, within Xcc-8004.364.1at 349.610 kb on - strand, within Xcc-8004.364.1at 349.941 kb on - strandat 349.941 kb on - strandat 349.942 kb on + strandat 349.942 kb on + strandat 349.942 kb on + strandat 349.942 kb on + strandat 349.942 kb on + strandat 349.942 kb on + strandat 349.942 kb on + strandat 349.942 kb on + strandat 349.942 kb on + strandat 349.943 kb on - strandat 349.943 kb on - strandat 350.050 kb on + strandat 350.051 kb on - strandat 350.111 kb on + strandat 350.111 kb on + strandat 350.111 kb on + strandat 350.112 kb on - strandat 350.112 kb on - strandat 350.112 kb on - strandat 350.112 kb on - strandat 350.112 kb on - strandat 350.451 kb on + strand, within Xcc-8004.365.1at 350.754 kb on + strand, within Xcc-8004.365.1at 350.754 kb on + strand, within Xcc-8004.365.1at 350.754 kb on + strand, within Xcc-8004.365.1at 350.754 kb on + strand, within Xcc-8004.365.1at 350.754 kb on + strand, within Xcc-8004.365.1at 350.754 kb on + strand, within Xcc-8004.365.1at 350.754 kb on + strand, within Xcc-8004.365.1at 350.754 kb on + strand, within Xcc-8004.365.1at 350.755 kb on - strand, within Xcc-8004.365.1at 350.755 kb on - strand, within Xcc-8004.365.1at 350.755 kb on - strand, within Xcc-8004.365.1at 350.755 kb on - strand, within Xcc-8004.365.1at 350.755 kb on - strand, within Xcc-8004.365.1at 350.755 kb on - strand, within Xcc-8004.365.1at 350.829 kb on + strand, within Xcc-8004.365.1at 350.829 kb on + strand, within Xcc-8004.365.1at 350.829 kb on + strand, within Xcc-8004.365.1at 350.829 kb on + strand, within Xcc-8004.365.1at 350.829 kb on + strand, within Xcc-8004.365.1at 350.829 kb on + strand, within Xcc-8004.365.1at 350.829 kb on + strand, within Xcc-8004.365.1at 350.829 kb on + strand, within Xcc-8004.365.1at 350.829 kb on + strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1at 350.830 kb on - strand, within Xcc-8004.365.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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347,815 - Xcc-8004.363.1 0.40 -0.9
347,815 - Xcc-8004.363.1 0.40 +1.9
347,815 - Xcc-8004.363.1 0.40 -1.8
348,038 + Xcc-8004.363.1 0.58 -1.1
348,038 + Xcc-8004.363.1 0.58 -0.3
348,039 - Xcc-8004.363.1 0.58 -1.9
348,039 - Xcc-8004.363.1 0.58 +0.1
348,039 - Xcc-8004.363.1 0.58 -1.5
348,042 + Xcc-8004.363.1 0.58 -0.0
348,043 - Xcc-8004.363.1 0.58 +0.4
348,077 + Xcc-8004.363.1 0.61 +0.1
348,078 - Xcc-8004.363.1 0.61 -0.5
348,078 - Xcc-8004.363.1 0.61 +0.4
348,393 + Xcc-8004.363.1 0.86 -0.8
348,417 + Xcc-8004.363.1 0.88 +2.6
348,417 + Xcc-8004.363.1 0.88 +0.8
348,417 + Xcc-8004.363.1 0.88 -1.6
348,417 + Xcc-8004.363.1 0.88 +0.7
348,417 + Xcc-8004.363.1 0.88 -1.2
348,417 + Xcc-8004.363.1 0.88 +1.5
348,417 + Xcc-8004.363.1 0.88 +0.2
348,418 - Xcc-8004.363.1 0.88 -0.3
348,418 - Xcc-8004.363.1 0.88 -1.8
348,418 - Xcc-8004.363.1 0.88 -1.6
348,418 - Xcc-8004.363.1 0.88 -1.3
348,418 - Xcc-8004.363.1 0.88 +0.7
348,418 - Xcc-8004.363.1 0.88 +0.3
348,418 - Xcc-8004.363.1 0.88 -0.9
349,284 + Xcc-8004.364.1 0.57 -0.7
349,285 - Xcc-8004.364.1 0.57 -0.1
349,285 - Xcc-8004.364.1 0.57 -0.9
349,535 - Xcc-8004.364.1 0.77 -0.8
349,610 - Xcc-8004.364.1 0.82 -1.6
349,941 - +0.1
349,941 - +1.0
349,942 + -1.3
349,942 + -0.2
349,942 + +0.3
349,942 + +0.1
349,942 + -0.1
349,942 + +1.7
349,942 + -1.5
349,942 + -0.8
349,942 + +0.7
349,943 - +0.9
349,943 - -0.4
350,050 + -0.6
350,051 - -0.1
350,111 + +0.0
350,111 + -0.8
350,111 + +0.4
350,112 - +0.5
350,112 - -0.3
350,112 - -1.2
350,112 - +0.7
350,112 - -0.1
350,451 + Xcc-8004.365.1 0.34 +0.9
350,754 + Xcc-8004.365.1 0.68 +0.2
350,754 + Xcc-8004.365.1 0.68 -0.1
350,754 + Xcc-8004.365.1 0.68 -0.1
350,754 + Xcc-8004.365.1 0.68 -0.1
350,754 + Xcc-8004.365.1 0.68 -0.6
350,754 + Xcc-8004.365.1 0.68 +0.7
350,754 + Xcc-8004.365.1 0.68 -0.5
350,754 + Xcc-8004.365.1 0.68 -1.1
350,755 - Xcc-8004.365.1 0.68 +0.7
350,755 - Xcc-8004.365.1 0.68 -0.5
350,755 - Xcc-8004.365.1 0.68 -1.3
350,755 - Xcc-8004.365.1 0.68 +0.7
350,755 - Xcc-8004.365.1 0.68 +2.3
350,755 - Xcc-8004.365.1 0.68 +0.9
350,829 + Xcc-8004.365.1 0.77 +0.0
350,829 + Xcc-8004.365.1 0.77 -2.6
350,829 + Xcc-8004.365.1 0.77 -0.3
350,829 + Xcc-8004.365.1 0.77 +0.5
350,829 + Xcc-8004.365.1 0.77 +1.7
350,829 + Xcc-8004.365.1 0.77 +0.7
350,829 + Xcc-8004.365.1 0.77 -1.6
350,829 + Xcc-8004.365.1 0.77 -1.1
350,829 + Xcc-8004.365.1 0.77 -0.1
350,830 - Xcc-8004.365.1 0.77 -0.7
350,830 - Xcc-8004.365.1 0.77 +0.0
350,830 - Xcc-8004.365.1 0.77 -1.1
350,830 - Xcc-8004.365.1 0.77 +0.0
350,830 - Xcc-8004.365.1 0.77 -1.3
350,830 - Xcc-8004.365.1 0.77 +0.2
350,830 - Xcc-8004.365.1 0.77 +0.3
350,830 - Xcc-8004.365.1 0.77 -0.1
350,830 - Xcc-8004.365.1 0.77 -0.9
350,830 - Xcc-8004.365.1 0.77 -0.3
350,830 - Xcc-8004.365.1 0.77 -1.3
350,830 - Xcc-8004.365.1 0.77 +0.2

Or see this region's nucleotide sequence