Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3598.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3595.1 and Xcc-8004.3596.1 are separated by 15 nucleotidesXcc-8004.3596.1 and Xcc-8004.3597.1 overlap by 37 nucleotidesXcc-8004.3597.1 and Xcc-8004.3598.1 are separated by 11 nucleotidesXcc-8004.3598.1 and Xcc-8004.3599.1 are separated by 473 nucleotides Xcc-8004.3595.1: Xcc-8004.3595.1 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 3,485,510 to 3,487,600 Xcc-8004.3595.1 Xcc-8004.3596.1: Xcc-8004.3596.1 - hypothetical protein, at 3,487,616 to 3,487,795 Xcc-8004.3596.1 Xcc-8004.3597.1: Xcc-8004.3597.1 - Phosphoserine phosphatase (EC 3.1.3.3), at 3,487,759 to 3,488,349 Xcc-8004.3597.1 Xcc-8004.3598.1: Xcc-8004.3598.1 - Ferredoxin II, at 3,488,361 to 3,488,780 Xcc-8004.3598.1 Xcc-8004.3599.1: Xcc-8004.3599.1 - FIG01210706: hypothetical protein, at 3,489,254 to 3,490,042 Xcc-8004.3599.1 Position (kb) 3488 3489Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3487.424 kb on + strandat 3487.810 kb on + strandat 3487.810 kb on + strandat 3487.810 kb on + strandat 3487.810 kb on + strandat 3487.810 kb on + strandat 3487.810 kb on + strandat 3487.810 kb on + strandat 3487.810 kb on + strandat 3487.810 kb on + strandat 3487.811 kb on - strandat 3487.811 kb on - strandat 3487.811 kb on - strandat 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.993 kb on + strand, within Xcc-8004.3597.1at 3487.994 kb on - strand, within Xcc-8004.3597.1at 3487.994 kb on - strand, within Xcc-8004.3597.1at 3487.994 kb on - strand, within Xcc-8004.3597.1at 3487.994 kb on - strand, within Xcc-8004.3597.1at 3487.994 kb on - strand, within Xcc-8004.3597.1at 3487.994 kb on - strand, within Xcc-8004.3597.1at 3488.104 kb on + strand, within Xcc-8004.3597.1at 3488.105 kb on - strand, within Xcc-8004.3597.1at 3488.105 kb on - strand, within Xcc-8004.3597.1at 3488.255 kb on - strand, within Xcc-8004.3597.1at 3488.272 kb on + strand, within Xcc-8004.3597.1at 3488.272 kb on + strand, within Xcc-8004.3597.1at 3488.273 kb on - strand, within Xcc-8004.3597.1at 3488.273 kb on - strand, within Xcc-8004.3597.1at 3488.273 kb on - strand, within Xcc-8004.3597.1at 3488.326 kb on + strandat 3488.360 kb on - strandat 3488.455 kb on - strand, within Xcc-8004.3598.1at 3488.562 kb on + strand, within Xcc-8004.3598.1at 3488.562 kb on + strand, within Xcc-8004.3598.1at 3488.563 kb on - strand, within Xcc-8004.3598.1at 3488.563 kb on - strand, within Xcc-8004.3598.1at 3488.671 kb on + strand, within Xcc-8004.3598.1at 3488.671 kb on + strand, within Xcc-8004.3598.1at 3488.671 kb on + strand, within Xcc-8004.3598.1at 3488.672 kb on - strand, within Xcc-8004.3598.1at 3488.672 kb on - strand, within Xcc-8004.3598.1at 3488.672 kb on - strand, within Xcc-8004.3598.1at 3488.687 kb on + strand, within Xcc-8004.3598.1at 3488.687 kb on + strand, within Xcc-8004.3598.1at 3488.687 kb on + strand, within Xcc-8004.3598.1at 3488.687 kb on + strand, within Xcc-8004.3598.1at 3488.687 kb on + strand, within Xcc-8004.3598.1at 3488.687 kb on + strand, within Xcc-8004.3598.1at 3488.687 kb on + strand, within Xcc-8004.3598.1at 3488.687 kb on + strand, within Xcc-8004.3598.1at 3488.688 kb on - strand, within Xcc-8004.3598.1at 3488.688 kb on - strand, within Xcc-8004.3598.1at 3488.688 kb on - strand, within Xcc-8004.3598.1at 3488.728 kb on + strand, within Xcc-8004.3598.1at 3488.728 kb on + strand, within Xcc-8004.3598.1at 3488.729 kb on - strand, within Xcc-8004.3598.1at 3488.729 kb on - strand, within Xcc-8004.3598.1at 3488.729 kb on - strand, within Xcc-8004.3598.1at 3488.770 kb on + strandat 3488.770 kb on + strandat 3488.771 kb on - strandat 3488.819 kb on + strandat 3488.820 kb on - strandat 3488.830 kb on + strandat 3488.830 kb on + strandat 3488.942 kb on + strandat 3488.942 kb on + strandat 3488.942 kb on + strandat 3488.942 kb on + strandat 3488.943 kb on - strandat 3488.943 kb on - strandat 3488.943 kb on - strandat 3488.943 kb on - strandat 3488.943 kb on - strandat 3489.052 kb on + strandat 3489.052 kb on + strandat 3489.052 kb on + strandat 3489.052 kb on + strandat 3489.052 kb on + strandat 3489.052 kb on + strandat 3489.052 kb on + strandat 3489.053 kb on - strandat 3489.053 kb on - strandat 3489.053 kb on - strandat 3489.053 kb on - strandat 3489.053 kb on - strandat 3489.053 kb on - strandat 3489.131 kb on + strandat 3489.132 kb on - strandat 3489.132 kb on - strandat 3489.220 kb on + strandat 3489.220 kb on + strandat 3489.220 kb on + strandat 3489.221 kb on - strandat 3489.319 kb on - strandat 3489.459 kb on - strand, within Xcc-8004.3599.1at 3489.593 kb on + strand, within Xcc-8004.3599.1at 3489.593 kb on + strand, within Xcc-8004.3599.1at 3489.593 kb on + strand, within Xcc-8004.3599.1at 3489.594 kb on - strand, within Xcc-8004.3599.1at 3489.594 kb on - strand, within Xcc-8004.3599.1at 3489.594 kb on - strand, within Xcc-8004.3599.1at 3489.680 kb on + strand, within Xcc-8004.3599.1at 3489.680 kb on + strand, within Xcc-8004.3599.1at 3489.680 kb on + strand, within Xcc-8004.3599.1at 3489.681 kb on - strand, within Xcc-8004.3599.1at 3489.681 kb on - strand, within Xcc-8004.3599.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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3,487,424 + -0.2
3,487,810 + +1.5
3,487,810 + +0.0
3,487,810 + -1.5
3,487,810 + +0.3
3,487,810 + +0.2
3,487,810 + -1.0
3,487,810 + +0.5
3,487,810 + +0.7
3,487,810 + -0.3
3,487,811 - -1.1
3,487,811 - -0.4
3,487,811 - +0.4
3,487,993 + Xcc-8004.3597.1 0.40 +0.2
3,487,993 + Xcc-8004.3597.1 0.40 +1.2
3,487,993 + Xcc-8004.3597.1 0.40 +0.0
3,487,993 + Xcc-8004.3597.1 0.40 +0.5
3,487,993 + Xcc-8004.3597.1 0.40 +0.1
3,487,993 + Xcc-8004.3597.1 0.40 +0.3
3,487,993 + Xcc-8004.3597.1 0.40 +0.4
3,487,993 + Xcc-8004.3597.1 0.40 +0.1
3,487,993 + Xcc-8004.3597.1 0.40 +0.3
3,487,993 + Xcc-8004.3597.1 0.40 -0.2
3,487,993 + Xcc-8004.3597.1 0.40 -1.2
3,487,993 + Xcc-8004.3597.1 0.40 +0.4
3,487,993 + Xcc-8004.3597.1 0.40 +0.2
3,487,993 + Xcc-8004.3597.1 0.40 +0.2
3,487,993 + Xcc-8004.3597.1 0.40 +0.2
3,487,993 + Xcc-8004.3597.1 0.40 +0.5
3,487,994 - Xcc-8004.3597.1 0.40 -0.5
3,487,994 - Xcc-8004.3597.1 0.40 +0.1
3,487,994 - Xcc-8004.3597.1 0.40 +2.6
3,487,994 - Xcc-8004.3597.1 0.40 +0.1
3,487,994 - Xcc-8004.3597.1 0.40 +0.6
3,487,994 - Xcc-8004.3597.1 0.40 +0.2
3,488,104 + Xcc-8004.3597.1 0.58 +0.1
3,488,105 - Xcc-8004.3597.1 0.59 -0.2
3,488,105 - Xcc-8004.3597.1 0.59 -0.5
3,488,255 - Xcc-8004.3597.1 0.84 +0.2
3,488,272 + Xcc-8004.3597.1 0.87 +0.3
3,488,272 + Xcc-8004.3597.1 0.87 +0.3
3,488,273 - Xcc-8004.3597.1 0.87 -0.3
3,488,273 - Xcc-8004.3597.1 0.87 -0.3
3,488,273 - Xcc-8004.3597.1 0.87 +0.1
3,488,326 + -0.3
3,488,360 - +1.2
3,488,455 - Xcc-8004.3598.1 0.22 -1.1
3,488,562 + Xcc-8004.3598.1 0.48 -0.5
3,488,562 + Xcc-8004.3598.1 0.48 +0.8
3,488,563 - Xcc-8004.3598.1 0.48 -0.2
3,488,563 - Xcc-8004.3598.1 0.48 +0.6
3,488,671 + Xcc-8004.3598.1 0.74 -0.4
3,488,671 + Xcc-8004.3598.1 0.74 +0.1
3,488,671 + Xcc-8004.3598.1 0.74 -1.2
3,488,672 - Xcc-8004.3598.1 0.74 +0.3
3,488,672 - Xcc-8004.3598.1 0.74 -1.8
3,488,672 - Xcc-8004.3598.1 0.74 -0.4
3,488,687 + Xcc-8004.3598.1 0.78 -0.3
3,488,687 + Xcc-8004.3598.1 0.78 -0.5
3,488,687 + Xcc-8004.3598.1 0.78 +0.8
3,488,687 + Xcc-8004.3598.1 0.78 -0.2
3,488,687 + Xcc-8004.3598.1 0.78 -0.7
3,488,687 + Xcc-8004.3598.1 0.78 -0.8
3,488,687 + Xcc-8004.3598.1 0.78 +0.3
3,488,687 + Xcc-8004.3598.1 0.78 -1.2
3,488,688 - Xcc-8004.3598.1 0.78 -0.4
3,488,688 - Xcc-8004.3598.1 0.78 -1.2
3,488,688 - Xcc-8004.3598.1 0.78 -1.8
3,488,728 + Xcc-8004.3598.1 0.87 +0.2
3,488,728 + Xcc-8004.3598.1 0.87 +1.2
3,488,729 - Xcc-8004.3598.1 0.88 -0.5
3,488,729 - Xcc-8004.3598.1 0.88 -1.1
3,488,729 - Xcc-8004.3598.1 0.88 -0.6
3,488,770 + +0.0
3,488,770 + -0.3
3,488,771 - -0.2
3,488,819 + +0.2
3,488,820 - -1.2
3,488,830 + +0.5
3,488,830 + -0.2
3,488,942 + -0.5
3,488,942 + -2.7
3,488,942 + +2.4
3,488,942 + -1.6
3,488,943 - -0.2
3,488,943 - +1.2
3,488,943 - -1.2
3,488,943 - +1.1
3,488,943 - -0.8
3,489,052 + -0.6
3,489,052 + +0.5
3,489,052 + -0.1
3,489,052 + +0.0
3,489,052 + +0.4
3,489,052 + +1.4
3,489,052 + +0.8
3,489,053 - +0.3
3,489,053 - +0.7
3,489,053 - -0.2
3,489,053 - +0.8
3,489,053 - -0.3
3,489,053 - -1.3
3,489,131 + +0.4
3,489,132 - +1.5
3,489,132 - +0.6
3,489,220 + -0.2
3,489,220 + +2.9
3,489,220 + -0.9
3,489,221 - -1.0
3,489,319 - -0.8
3,489,459 - Xcc-8004.3599.1 0.26 -1.0
3,489,593 + Xcc-8004.3599.1 0.43 +1.2
3,489,593 + Xcc-8004.3599.1 0.43 -1.0
3,489,593 + Xcc-8004.3599.1 0.43 -0.3
3,489,594 - Xcc-8004.3599.1 0.43 -0.9
3,489,594 - Xcc-8004.3599.1 0.43 +1.8
3,489,594 - Xcc-8004.3599.1 0.43 -0.3
3,489,680 + Xcc-8004.3599.1 0.54 +1.2
3,489,680 + Xcc-8004.3599.1 0.54 +1.0
3,489,680 + Xcc-8004.3599.1 0.54 +0.4
3,489,681 - Xcc-8004.3599.1 0.54 +0.2
3,489,681 - Xcc-8004.3599.1 0.54 +0.5

Or see this region's nucleotide sequence