Experiment: PBS control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3169.1 and Xcc-8004.3170.1 are separated by 161 nucleotides Xcc-8004.3170.1 and Xcc-8004.3171.1 are separated by 10 nucleotides
Xcc-8004.3169.1: Xcc-8004.3169.1 - Methyltransferase, at 3,089,546 to 3,090,391
Xcc-8004.3169.1
Xcc-8004.3170.1: Xcc-8004.3170.1 - FIG01210267: hypothetical protein, at 3,090,553 to 3,091,434
Xcc-8004.3170.1
Xcc-8004.3171.1: Xcc-8004.3171.1 - FIG01213081: hypothetical protein, at 3,091,445 to 3,092,581
Xcc-8004.3171.1
Position (kb) 3090
3091
3092 Strain fitness (log2 ratio) -2
-1
0
1 at 3089.661 kb on + strand, within Xcc-8004.3169.1 at 3089.661 kb on + strand, within Xcc-8004.3169.1 at 3089.661 kb on + strand, within Xcc-8004.3169.1 at 3089.662 kb on - strand, within Xcc-8004.3169.1 at 3089.662 kb on - strand, within Xcc-8004.3169.1 at 3089.662 kb on - strand, within Xcc-8004.3169.1 at 3089.662 kb on - strand, within Xcc-8004.3169.1 at 3089.710 kb on - strand, within Xcc-8004.3169.1 at 3089.746 kb on - strand, within Xcc-8004.3169.1 at 3089.994 kb on + strand, within Xcc-8004.3169.1 at 3089.994 kb on + strand, within Xcc-8004.3169.1 at 3089.994 kb on + strand, within Xcc-8004.3169.1 at 3089.995 kb on - strand, within Xcc-8004.3169.1 at 3089.995 kb on - strand, within Xcc-8004.3169.1 at 3089.995 kb on - strand, within Xcc-8004.3169.1 at 3089.995 kb on - strand, within Xcc-8004.3169.1 at 3090.142 kb on - strand, within Xcc-8004.3169.1 at 3090.291 kb on + strand, within Xcc-8004.3169.1 at 3090.291 kb on + strand, within Xcc-8004.3169.1 at 3090.292 kb on - strand, within Xcc-8004.3169.1 at 3090.622 kb on + strand at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.729 kb on - strand, within Xcc-8004.3170.1 at 3090.734 kb on + strand, within Xcc-8004.3170.1 at 3090.735 kb on - strand, within Xcc-8004.3170.1 at 3091.385 kb on + strand at 3091.385 kb on + strand at 3091.582 kb on - strand, within Xcc-8004.3171.1 at 3091.662 kb on + strand, within Xcc-8004.3171.1 at 3091.663 kb on - strand, within Xcc-8004.3171.1 at 3091.834 kb on - strand, within Xcc-8004.3171.1 at 3091.881 kb on + strand, within Xcc-8004.3171.1 at 3092.129 kb on + strand, within Xcc-8004.3171.1 at 3092.130 kb on - strand, within Xcc-8004.3171.1 at 3092.260 kb on - strand, within Xcc-8004.3171.1 at 3092.260 kb on - strand, within Xcc-8004.3171.1 at 3092.260 kb on - strand, within Xcc-8004.3171.1
Per-strain Table
Position Strand Gene LocusTag Fraction PBS control remove 3,089,661 + Xcc-8004.3169.1 0.14 -1.1 3,089,661 + Xcc-8004.3169.1 0.14 +0.9 3,089,661 + Xcc-8004.3169.1 0.14 +0.1 3,089,662 - Xcc-8004.3169.1 0.14 +1.2 3,089,662 - Xcc-8004.3169.1 0.14 -0.5 3,089,662 - Xcc-8004.3169.1 0.14 -0.7 3,089,662 - Xcc-8004.3169.1 0.14 -0.9 3,089,710 - Xcc-8004.3169.1 0.19 +1.6 3,089,746 - Xcc-8004.3169.1 0.24 -1.4 3,089,994 + Xcc-8004.3169.1 0.53 -1.0 3,089,994 + Xcc-8004.3169.1 0.53 -0.2 3,089,994 + Xcc-8004.3169.1 0.53 +0.0 3,089,995 - Xcc-8004.3169.1 0.53 +0.0 3,089,995 - Xcc-8004.3169.1 0.53 -0.5 3,089,995 - Xcc-8004.3169.1 0.53 +0.9 3,089,995 - Xcc-8004.3169.1 0.53 +0.7 3,090,142 - Xcc-8004.3169.1 0.70 -0.9 3,090,291 + Xcc-8004.3169.1 0.88 +0.6 3,090,291 + Xcc-8004.3169.1 0.88 +0.4 3,090,292 - Xcc-8004.3169.1 0.88 +0.0 3,090,622 + -0.7 3,090,701 + Xcc-8004.3170.1 0.17 -0.0 3,090,701 + Xcc-8004.3170.1 0.17 -1.0 3,090,701 + Xcc-8004.3170.1 0.17 -0.6 3,090,701 + Xcc-8004.3170.1 0.17 -0.6 3,090,701 + Xcc-8004.3170.1 0.17 -0.2 3,090,701 + Xcc-8004.3170.1 0.17 -0.3 3,090,701 + Xcc-8004.3170.1 0.17 -1.4 3,090,702 - Xcc-8004.3170.1 0.17 +0.0 3,090,702 - Xcc-8004.3170.1 0.17 +0.2 3,090,702 - Xcc-8004.3170.1 0.17 +1.5 3,090,702 - Xcc-8004.3170.1 0.17 -2.1 3,090,729 - Xcc-8004.3170.1 0.20 +0.0 3,090,734 + Xcc-8004.3170.1 0.21 -0.1 3,090,735 - Xcc-8004.3170.1 0.21 -0.8 3,091,385 + -0.3 3,091,385 + +0.1 3,091,582 - Xcc-8004.3171.1 0.12 +0.4 3,091,662 + Xcc-8004.3171.1 0.19 -0.3 3,091,663 - Xcc-8004.3171.1 0.19 +1.6 3,091,834 - Xcc-8004.3171.1 0.34 -0.6 3,091,881 + Xcc-8004.3171.1 0.38 +0.2 3,092,129 + Xcc-8004.3171.1 0.60 +0.3 3,092,130 - Xcc-8004.3171.1 0.60 +0.9 3,092,260 - Xcc-8004.3171.1 0.72 +0.5 3,092,260 - Xcc-8004.3171.1 0.72 -0.1 3,092,260 - Xcc-8004.3171.1 0.72 -1.3
Or see this region's nucleotide sequence