Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3123.1

Experiment: PBS control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3121.1 and Xcc-8004.3123.1 overlap by 1 nucleotidesXcc-8004.3123.1 and Xcc-8004.3124.1 are separated by 312 nucleotides Xcc-8004.3121.1: Xcc-8004.3121.1 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 3,048,649 to 3,049,632 Xcc-8004.3121.1 Xcc-8004.3123.1: Xcc-8004.3123.1 - Dihydropteroate synthase (EC 2.5.1.15), at 3,049,632 to 3,050,534 Xcc-8004.3123.1 Xcc-8004.3124.1: Xcc-8004.3124.1 - Cell division protein FtsH (EC 3.4.24.-), at 3,050,847 to 3,052,787 Xcc-8004.3124.1 Position (kb) 3049 3050 3051Strain fitness (log2 ratio) -1 0 1 2at 3048.650 kb on + strandat 3048.650 kb on + strandat 3048.650 kb on + strandat 3048.650 kb on + strandat 3048.650 kb on + strandat 3048.651 kb on - strandat 3048.651 kb on - strandat 3048.651 kb on - strandat 3048.651 kb on - strandat 3049.406 kb on + strand, within Xcc-8004.3121.1at 3049.714 kb on - strandat 3049.714 kb on - strandat 3049.714 kb on - strandat 3049.714 kb on - strandat 3050.667 kb on + strandat 3050.667 kb on + strandat 3050.668 kb on - strandat 3050.849 kb on - strandat 3050.895 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
remove
3,048,650 + -0.1
3,048,650 + -0.5
3,048,650 + -0.4
3,048,650 + -0.7
3,048,650 + -0.3
3,048,651 - -0.8
3,048,651 - +1.9
3,048,651 - +1.8
3,048,651 - +1.9
3,049,406 + Xcc-8004.3121.1 0.77 -0.7
3,049,714 - +0.3
3,049,714 - +0.1
3,049,714 - -0.7
3,049,714 - +0.9
3,050,667 + +0.8
3,050,667 + -0.8
3,050,668 - -0.3
3,050,849 - +0.3
3,050,895 - +1.3

Or see this region's nucleotide sequence