Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1904.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1901.1 and Xcc-8004.1903.1 are separated by 18 nucleotidesXcc-8004.1903.1 and Xcc-8004.1904.1 are separated by 9 nucleotidesXcc-8004.1904.1 and Xcc-8004.1905.1 are separated by 33 nucleotides Xcc-8004.1901.1: Xcc-8004.1901.1 - histidine kinase, at 1,834,908 to 1,836,863 Xcc-8004.1901.1 Xcc-8004.1903.1: Xcc-8004.1903.1 - two-component system regulatory protein, at 1,836,882 to 1,837,148 Xcc-8004.1903.1 Xcc-8004.1904.1: Xcc-8004.1904.1 - two-component system regulatory protein, at 1,837,158 to 1,838,240 Xcc-8004.1904.1 Xcc-8004.1905.1: Xcc-8004.1905.1 - Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO, at 1,838,274 to 1,839,404 Xcc-8004.1905.1 Position (kb) 1837 1838 1839Strain fitness (log2 ratio) -1 0 1 2at 1836.541 kb on + strand, within Xcc-8004.1901.1at 1836.542 kb on - strand, within Xcc-8004.1901.1at 1836.542 kb on - strand, within Xcc-8004.1901.1at 1836.620 kb on - strand, within Xcc-8004.1901.1at 1836.748 kb on + strandat 1836.749 kb on - strandat 1836.749 kb on - strandat 1836.749 kb on - strandat 1836.751 kb on - strandat 1836.751 kb on - strandat 1836.797 kb on - strandat 1837.184 kb on - strandat 1837.281 kb on - strand, within Xcc-8004.1904.1at 1837.580 kb on + strand, within Xcc-8004.1904.1at 1837.762 kb on - strand, within Xcc-8004.1904.1at 1837.762 kb on - strand, within Xcc-8004.1904.1at 1838.148 kb on + strandat 1838.148 kb on + strandat 1838.431 kb on - strand, within Xcc-8004.1905.1at 1838.459 kb on + strand, within Xcc-8004.1905.1at 1838.460 kb on - strand, within Xcc-8004.1905.1at 1838.461 kb on + strand, within Xcc-8004.1905.1at 1838.530 kb on + strand, within Xcc-8004.1905.1at 1838.531 kb on - strand, within Xcc-8004.1905.1at 1838.932 kb on + strand, within Xcc-8004.1905.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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1,836,541 + Xcc-8004.1901.1 0.83 +0.0
1,836,542 - Xcc-8004.1901.1 0.84 +0.8
1,836,542 - Xcc-8004.1901.1 0.84 +0.2
1,836,620 - Xcc-8004.1901.1 0.88 +0.1
1,836,748 + -0.2
1,836,749 - -0.4
1,836,749 - -1.1
1,836,749 - +0.8
1,836,751 - -0.4
1,836,751 - -1.1
1,836,797 - +0.3
1,837,184 - -1.2
1,837,281 - Xcc-8004.1904.1 0.11 -0.9
1,837,580 + Xcc-8004.1904.1 0.39 -1.2
1,837,762 - Xcc-8004.1904.1 0.56 +0.0
1,837,762 - Xcc-8004.1904.1 0.56 -0.2
1,838,148 + -0.5
1,838,148 + -0.0
1,838,431 - Xcc-8004.1905.1 0.14 +0.1
1,838,459 + Xcc-8004.1905.1 0.16 +0.5
1,838,460 - Xcc-8004.1905.1 0.16 +0.2
1,838,461 + Xcc-8004.1905.1 0.17 -0.3
1,838,530 + Xcc-8004.1905.1 0.23 -1.0
1,838,531 - Xcc-8004.1905.1 0.23 -0.6
1,838,932 + Xcc-8004.1905.1 0.58 +1.8

Or see this region's nucleotide sequence