Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36020

Experiment: R2A with Nickel (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36010 and RR42_RS36015 are separated by 9 nucleotidesRR42_RS36015 and RR42_RS36020 are separated by 366 nucleotidesRR42_RS36020 and RR42_RS36025 are separated by 694 nucleotides RR42_RS36010: RR42_RS36010 - peptidase, at 3,526,711 to 3,527,214 _RS36010 RR42_RS36015: RR42_RS36015 - pilus assembly protein, at 3,527,224 to 3,527,412 _RS36015 RR42_RS36020: RR42_RS36020 - hemagglutinin, at 3,527,779 to 3,528,954 _RS36020 RR42_RS36025: RR42_RS36025 - hemagglutinin, at 3,529,649 to 3,531,103 _RS36025 Position (kb) 3527 3528 3529Strain fitness (log2 ratio) -2 -1 0 1 2at 3527.019 kb on - strand, within RR42_RS36010at 3527.226 kb on - strandat 3527.299 kb on + strand, within RR42_RS36015at 3527.300 kb on - strand, within RR42_RS36015at 3527.300 kb on - strand, within RR42_RS36015at 3527.300 kb on - strand, within RR42_RS36015at 3527.319 kb on + strand, within RR42_RS36015at 3527.319 kb on + strand, within RR42_RS36015at 3527.354 kb on + strand, within RR42_RS36015at 3527.396 kb on - strandat 3527.435 kb on - strandat 3527.493 kb on + strandat 3527.497 kb on - strandat 3527.524 kb on + strandat 3527.527 kb on - strandat 3527.541 kb on + strandat 3527.541 kb on + strandat 3527.541 kb on + strandat 3527.542 kb on - strandat 3527.542 kb on - strandat 3527.542 kb on - strandat 3527.542 kb on - strandat 3527.551 kb on - strandat 3527.566 kb on + strandat 3527.566 kb on + strandat 3527.567 kb on - strandat 3527.569 kb on - strandat 3527.569 kb on - strandat 3527.583 kb on - strandat 3527.646 kb on + strandat 3527.688 kb on - strandat 3527.729 kb on + strandat 3527.730 kb on - strandat 3527.736 kb on + strandat 3527.736 kb on + strandat 3527.737 kb on - strandat 3527.755 kb on + strandat 3527.765 kb on - strandat 3527.765 kb on - strandat 3527.765 kb on - strandat 3528.288 kb on + strand, within RR42_RS36020at 3528.455 kb on - strand, within RR42_RS36020at 3528.555 kb on + strand, within RR42_RS36020at 3528.556 kb on - strand, within RR42_RS36020at 3528.556 kb on - strand, within RR42_RS36020at 3528.625 kb on + strand, within RR42_RS36020at 3528.625 kb on + strand, within RR42_RS36020at 3528.626 kb on - strand, within RR42_RS36020at 3528.626 kb on - strand, within RR42_RS36020at 3528.753 kb on + strand, within RR42_RS36020at 3528.754 kb on - strand, within RR42_RS36020at 3528.754 kb on - strand, within RR42_RS36020at 3529.052 kb on + strandat 3529.053 kb on - strandat 3529.059 kb on - strandat 3529.210 kb on + strandat 3529.210 kb on + strandat 3529.211 kb on - strandat 3529.269 kb on - strandat 3529.273 kb on + strandat 3529.274 kb on - strandat 3529.274 kb on - strandat 3529.274 kb on - strandat 3529.277 kb on + strandat 3529.410 kb on + strandat 3529.411 kb on - strandat 3529.414 kb on + strandat 3529.422 kb on - strandat 3529.422 kb on - strandat 3529.469 kb on + strandat 3529.516 kb on + strandat 3529.516 kb on + strandat 3529.517 kb on - strandat 3529.517 kb on - strandat 3529.655 kb on - strandat 3529.655 kb on - strandat 3529.742 kb on - strandat 3529.909 kb on + strand, within RR42_RS36025at 3529.909 kb on + strand, within RR42_RS36025at 3529.910 kb on - strand, within RR42_RS36025at 3529.910 kb on - strand, within RR42_RS36025

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.25 mM
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3,527,019 - RR42_RS36010 0.61 -0.0
3,527,226 - -0.3
3,527,299 + RR42_RS36015 0.40 -0.8
3,527,300 - RR42_RS36015 0.40 +0.3
3,527,300 - RR42_RS36015 0.40 -0.2
3,527,300 - RR42_RS36015 0.40 -0.4
3,527,319 + RR42_RS36015 0.50 +0.2
3,527,319 + RR42_RS36015 0.50 +0.2
3,527,354 + RR42_RS36015 0.69 -0.6
3,527,396 - +0.0
3,527,435 - -0.3
3,527,493 + +0.0
3,527,497 - -0.6
3,527,524 + +0.2
3,527,527 - +0.3
3,527,541 + +1.0
3,527,541 + -0.4
3,527,541 + -0.5
3,527,542 - -0.1
3,527,542 - -0.5
3,527,542 - +0.2
3,527,542 - +0.1
3,527,551 - +0.3
3,527,566 + +0.6
3,527,566 + -0.5
3,527,567 - -2.1
3,527,569 - +0.2
3,527,569 - +0.7
3,527,583 - -0.6
3,527,646 + +0.6
3,527,688 - +0.1
3,527,729 + +0.6
3,527,730 - +0.4
3,527,736 + +0.8
3,527,736 + +0.5
3,527,737 - +0.1
3,527,755 + -0.4
3,527,765 - +0.2
3,527,765 - +0.8
3,527,765 - -1.0
3,528,288 + RR42_RS36020 0.43 +0.0
3,528,455 - RR42_RS36020 0.57 -0.3
3,528,555 + RR42_RS36020 0.66 +1.3
3,528,556 - RR42_RS36020 0.66 +0.2
3,528,556 - RR42_RS36020 0.66 +0.1
3,528,625 + RR42_RS36020 0.72 -0.6
3,528,625 + RR42_RS36020 0.72 -0.4
3,528,626 - RR42_RS36020 0.72 +0.1
3,528,626 - RR42_RS36020 0.72 -0.0
3,528,753 + RR42_RS36020 0.83 +0.0
3,528,754 - RR42_RS36020 0.83 +0.2
3,528,754 - RR42_RS36020 0.83 +2.1
3,529,052 + -0.6
3,529,053 - +0.1
3,529,059 - -0.9
3,529,210 + -0.2
3,529,210 + +0.7
3,529,211 - -0.2
3,529,269 - +0.9
3,529,273 + +0.5
3,529,274 - -0.4
3,529,274 - -0.4
3,529,274 - +0.1
3,529,277 + -0.2
3,529,410 + +0.8
3,529,411 - +0.4
3,529,414 + -0.0
3,529,422 - -0.2
3,529,422 - -0.1
3,529,469 + -1.7
3,529,516 + +0.6
3,529,516 + +0.1
3,529,517 - +0.8
3,529,517 - -0.6
3,529,655 - -0.5
3,529,655 - -0.6
3,529,742 - -0.9
3,529,909 + RR42_RS36025 0.18 -1.2
3,529,909 + RR42_RS36025 0.18 -0.4
3,529,910 - RR42_RS36025 0.18 -0.5
3,529,910 - RR42_RS36025 0.18 -0.0

Or see this region's nucleotide sequence