Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20025

Experiment: R2A with Nickel (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20020 and RR42_RS20025 are separated by 64 nucleotidesRR42_RS20025 and RR42_RS20030 are separated by 207 nucleotides RR42_RS20020: RR42_RS20020 - cytochrome C, at 4,324,146 to 4,325,027 _RS20020 RR42_RS20025: RR42_RS20025 - coproporphyrinogen III oxidase, at 4,325,092 to 4,326,693 _RS20025 RR42_RS20030: RR42_RS20030 - ABC transporter permease, at 4,326,901 to 4,328,043 _RS20030 Position (kb) 4325 4326 4327Strain fitness (log2 ratio) -2 -1 0 1 2at 4324.093 kb on + strandat 4324.093 kb on + strandat 4324.093 kb on + strandat 4324.093 kb on + strandat 4324.093 kb on + strandat 4324.093 kb on + strandat 4324.093 kb on + strandat 4324.093 kb on + strandat 4324.094 kb on - strandat 4324.145 kb on + strandat 4324.145 kb on + strandat 4324.146 kb on - strandat 4324.311 kb on - strand, within RR42_RS20020at 4324.407 kb on + strand, within RR42_RS20020at 4324.408 kb on - strand, within RR42_RS20020at 4324.408 kb on - strand, within RR42_RS20020at 4324.408 kb on - strand, within RR42_RS20020at 4324.408 kb on - strand, within RR42_RS20020at 4324.408 kb on - strand, within RR42_RS20020at 4324.461 kb on + strand, within RR42_RS20020at 4324.462 kb on - strand, within RR42_RS20020at 4324.579 kb on - strand, within RR42_RS20020at 4324.611 kb on + strand, within RR42_RS20020at 4324.611 kb on + strand, within RR42_RS20020at 4324.611 kb on + strand, within RR42_RS20020at 4324.809 kb on + strand, within RR42_RS20020at 4324.809 kb on + strand, within RR42_RS20020at 4325.004 kb on + strandat 4325.004 kb on + strandat 4325.004 kb on + strandat 4325.004 kb on + strandat 4325.004 kb on + strandat 4325.004 kb on + strandat 4325.005 kb on - strandat 4325.026 kb on - strandat 4325.109 kb on - strandat 4325.133 kb on + strandat 4325.134 kb on - strandat 4325.480 kb on + strand, within RR42_RS20025at 4325.480 kb on + strand, within RR42_RS20025at 4325.481 kb on - strand, within RR42_RS20025at 4325.483 kb on + strand, within RR42_RS20025at 4325.483 kb on + strand, within RR42_RS20025at 4325.484 kb on - strand, within RR42_RS20025at 4325.484 kb on - strand, within RR42_RS20025at 4325.513 kb on + strand, within RR42_RS20025at 4325.583 kb on - strand, within RR42_RS20025at 4325.583 kb on - strand, within RR42_RS20025at 4325.669 kb on + strand, within RR42_RS20025at 4325.669 kb on + strand, within RR42_RS20025at 4325.669 kb on + strand, within RR42_RS20025at 4325.669 kb on + strand, within RR42_RS20025at 4325.669 kb on + strand, within RR42_RS20025at 4325.670 kb on - strand, within RR42_RS20025at 4325.670 kb on - strand, within RR42_RS20025at 4325.670 kb on - strand, within RR42_RS20025at 4325.670 kb on - strand, within RR42_RS20025at 4325.670 kb on - strand, within RR42_RS20025at 4325.675 kb on + strand, within RR42_RS20025at 4325.795 kb on + strand, within RR42_RS20025at 4325.801 kb on + strand, within RR42_RS20025at 4325.802 kb on - strand, within RR42_RS20025at 4325.885 kb on + strand, within RR42_RS20025at 4325.886 kb on - strand, within RR42_RS20025at 4325.886 kb on - strand, within RR42_RS20025at 4326.270 kb on - strand, within RR42_RS20025at 4326.324 kb on - strand, within RR42_RS20025at 4326.356 kb on + strand, within RR42_RS20025at 4326.356 kb on + strand, within RR42_RS20025at 4326.356 kb on + strand, within RR42_RS20025at 4326.357 kb on - strand, within RR42_RS20025at 4326.357 kb on - strand, within RR42_RS20025at 4326.357 kb on - strand, within RR42_RS20025at 4326.357 kb on - strand, within RR42_RS20025at 4326.491 kb on + strand, within RR42_RS20025at 4326.508 kb on - strand, within RR42_RS20025at 4326.729 kb on + strandat 4327.082 kb on - strand, within RR42_RS20030at 4327.082 kb on - strand, within RR42_RS20030at 4327.409 kb on - strand, within RR42_RS20030at 4327.409 kb on - strand, within RR42_RS20030at 4327.409 kb on - strand, within RR42_RS20030at 4327.660 kb on + strand, within RR42_RS20030

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.25 mM
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4,324,093 + +0.5
4,324,093 + +1.0
4,324,093 + +0.0
4,324,093 + +0.0
4,324,093 + -1.3
4,324,093 + -0.6
4,324,093 + +0.5
4,324,093 + +0.7
4,324,094 - +0.4
4,324,145 + -0.7
4,324,145 + +1.0
4,324,146 - -0.4
4,324,311 - RR42_RS20020 0.19 +0.5
4,324,407 + RR42_RS20020 0.30 -0.6
4,324,408 - RR42_RS20020 0.30 +0.7
4,324,408 - RR42_RS20020 0.30 +0.4
4,324,408 - RR42_RS20020 0.30 +0.7
4,324,408 - RR42_RS20020 0.30 -0.7
4,324,408 - RR42_RS20020 0.30 +0.7
4,324,461 + RR42_RS20020 0.36 +0.8
4,324,462 - RR42_RS20020 0.36 -0.2
4,324,579 - RR42_RS20020 0.49 +0.6
4,324,611 + RR42_RS20020 0.53 +2.1
4,324,611 + RR42_RS20020 0.53 -0.9
4,324,611 + RR42_RS20020 0.53 -0.4
4,324,809 + RR42_RS20020 0.75 +0.2
4,324,809 + RR42_RS20020 0.75 -0.2
4,325,004 + +0.3
4,325,004 + +0.5
4,325,004 + +0.1
4,325,004 + -0.1
4,325,004 + -0.6
4,325,004 + -0.2
4,325,005 - +0.5
4,325,026 - +0.6
4,325,109 - -0.7
4,325,133 + +0.7
4,325,134 - -0.5
4,325,480 + RR42_RS20025 0.24 -0.6
4,325,480 + RR42_RS20025 0.24 +0.4
4,325,481 - RR42_RS20025 0.24 +1.1
4,325,483 + RR42_RS20025 0.24 -0.5
4,325,483 + RR42_RS20025 0.24 -0.4
4,325,484 - RR42_RS20025 0.24 +0.9
4,325,484 - RR42_RS20025 0.24 +1.0
4,325,513 + RR42_RS20025 0.26 +0.2
4,325,583 - RR42_RS20025 0.31 -0.3
4,325,583 - RR42_RS20025 0.31 -0.8
4,325,669 + RR42_RS20025 0.36 +0.5
4,325,669 + RR42_RS20025 0.36 -0.0
4,325,669 + RR42_RS20025 0.36 +1.3
4,325,669 + RR42_RS20025 0.36 +0.3
4,325,669 + RR42_RS20025 0.36 -0.4
4,325,670 - RR42_RS20025 0.36 -1.0
4,325,670 - RR42_RS20025 0.36 +0.2
4,325,670 - RR42_RS20025 0.36 +0.7
4,325,670 - RR42_RS20025 0.36 +0.3
4,325,670 - RR42_RS20025 0.36 +1.7
4,325,675 + RR42_RS20025 0.36 -0.7
4,325,795 + RR42_RS20025 0.44 -1.1
4,325,801 + RR42_RS20025 0.44 +0.2
4,325,802 - RR42_RS20025 0.44 +0.4
4,325,885 + RR42_RS20025 0.50 -0.4
4,325,886 - RR42_RS20025 0.50 +0.8
4,325,886 - RR42_RS20025 0.50 +0.6
4,326,270 - RR42_RS20025 0.74 -0.3
4,326,324 - RR42_RS20025 0.77 -0.4
4,326,356 + RR42_RS20025 0.79 -2.6
4,326,356 + RR42_RS20025 0.79 +0.4
4,326,356 + RR42_RS20025 0.79 -0.1
4,326,357 - RR42_RS20025 0.79 -1.0
4,326,357 - RR42_RS20025 0.79 -0.4
4,326,357 - RR42_RS20025 0.79 -0.2
4,326,357 - RR42_RS20025 0.79 +0.3
4,326,491 + RR42_RS20025 0.87 +0.1
4,326,508 - RR42_RS20025 0.88 +0.8
4,326,729 + +0.0
4,327,082 - RR42_RS20030 0.16 -0.7
4,327,082 - RR42_RS20030 0.16 -0.5
4,327,409 - RR42_RS20030 0.44 -0.3
4,327,409 - RR42_RS20030 0.44 -1.0
4,327,409 - RR42_RS20030 0.44 +0.3
4,327,660 + RR42_RS20030 0.66 +0.2

Or see this region's nucleotide sequence