Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16065

Experiment: R2A with Nickel (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16060 and RR42_RS16065 are separated by 224 nucleotidesRR42_RS16065 and RR42_RS16070 overlap by 50 nucleotidesRR42_RS16070 and RR42_RS16075 are separated by 199 nucleotides RR42_RS16060: RR42_RS16060 - membrane protein, at 3,479,144 to 3,480,319 _RS16060 RR42_RS16065: RR42_RS16065 - GNAT family acetyltransferase, at 3,480,544 to 3,481,125 _RS16065 RR42_RS16070: RR42_RS16070 - cobyrinic acid a,c-diamide synthase, at 3,481,076 to 3,481,726 _RS16070 RR42_RS16075: RR42_RS16075 - cobyric acid synthase, at 3,481,926 to 3,483,386 _RS16075 Position (kb) 3480 3481 3482Strain fitness (log2 ratio) -2 -1 0 1 2at 3479.719 kb on + strand, within RR42_RS16060at 3479.719 kb on + strand, within RR42_RS16060at 3479.720 kb on - strand, within RR42_RS16060at 3479.880 kb on + strand, within RR42_RS16060at 3480.028 kb on - strand, within RR42_RS16060at 3480.038 kb on - strand, within RR42_RS16060at 3480.087 kb on + strand, within RR42_RS16060at 3480.087 kb on + strand, within RR42_RS16060at 3480.152 kb on + strand, within RR42_RS16060at 3480.153 kb on - strand, within RR42_RS16060at 3480.153 kb on - strand, within RR42_RS16060at 3480.274 kb on - strandat 3480.431 kb on + strandat 3480.431 kb on + strandat 3480.432 kb on - strandat 3480.631 kb on + strand, within RR42_RS16065at 3480.631 kb on + strand, within RR42_RS16065at 3480.631 kb on + strand, within RR42_RS16065at 3480.632 kb on - strand, within RR42_RS16065at 3480.632 kb on - strand, within RR42_RS16065at 3480.805 kb on + strand, within RR42_RS16065at 3480.806 kb on - strand, within RR42_RS16065at 3480.806 kb on - strand, within RR42_RS16065at 3480.814 kb on + strand, within RR42_RS16065at 3480.814 kb on + strand, within RR42_RS16065at 3480.815 kb on - strand, within RR42_RS16065at 3480.815 kb on - strand, within RR42_RS16065at 3480.931 kb on + strand, within RR42_RS16065at 3480.931 kb on + strand, within RR42_RS16065at 3480.932 kb on - strand, within RR42_RS16065at 3480.932 kb on - strand, within RR42_RS16065at 3481.209 kb on + strand, within RR42_RS16070at 3481.209 kb on + strand, within RR42_RS16070at 3481.209 kb on + strand, within RR42_RS16070at 3481.209 kb on + strand, within RR42_RS16070at 3481.209 kb on + strand, within RR42_RS16070at 3481.210 kb on - strand, within RR42_RS16070at 3481.210 kb on - strand, within RR42_RS16070at 3481.483 kb on + strand, within RR42_RS16070at 3481.484 kb on - strand, within RR42_RS16070at 3481.484 kb on - strand, within RR42_RS16070at 3481.484 kb on - strand, within RR42_RS16070at 3481.501 kb on + strand, within RR42_RS16070at 3481.654 kb on - strand, within RR42_RS16070at 3481.654 kb on - strand, within RR42_RS16070at 3481.689 kb on - strandat 3481.719 kb on - strandat 3481.847 kb on + strandat 3481.848 kb on - strandat 3481.928 kb on - strandat 3481.928 kb on - strandat 3482.107 kb on + strand, within RR42_RS16075at 3482.107 kb on + strand, within RR42_RS16075at 3482.108 kb on - strand, within RR42_RS16075at 3482.108 kb on - strand, within RR42_RS16075at 3482.108 kb on - strand, within RR42_RS16075

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.25 mM
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3,479,719 + RR42_RS16060 0.49 +0.2
3,479,719 + RR42_RS16060 0.49 +0.1
3,479,720 - RR42_RS16060 0.49 +0.2
3,479,880 + RR42_RS16060 0.63 -0.1
3,480,028 - RR42_RS16060 0.75 -0.8
3,480,038 - RR42_RS16060 0.76 +1.3
3,480,087 + RR42_RS16060 0.80 -0.7
3,480,087 + RR42_RS16060 0.80 -0.0
3,480,152 + RR42_RS16060 0.86 +0.9
3,480,153 - RR42_RS16060 0.86 -0.3
3,480,153 - RR42_RS16060 0.86 -2.7
3,480,274 - +0.0
3,480,431 + +0.1
3,480,431 + +0.3
3,480,432 - -0.4
3,480,631 + RR42_RS16065 0.15 -1.3
3,480,631 + RR42_RS16065 0.15 +1.7
3,480,631 + RR42_RS16065 0.15 +0.2
3,480,632 - RR42_RS16065 0.15 +0.2
3,480,632 - RR42_RS16065 0.15 +0.0
3,480,805 + RR42_RS16065 0.45 -0.6
3,480,806 - RR42_RS16065 0.45 -1.9
3,480,806 - RR42_RS16065 0.45 +0.0
3,480,814 + RR42_RS16065 0.46 -0.1
3,480,814 + RR42_RS16065 0.46 -0.8
3,480,815 - RR42_RS16065 0.47 +0.0
3,480,815 - RR42_RS16065 0.47 +0.2
3,480,931 + RR42_RS16065 0.66 +0.2
3,480,931 + RR42_RS16065 0.66 -2.2
3,480,932 - RR42_RS16065 0.67 -0.3
3,480,932 - RR42_RS16065 0.67 +0.2
3,481,209 + RR42_RS16070 0.20 -0.5
3,481,209 + RR42_RS16070 0.20 +0.1
3,481,209 + RR42_RS16070 0.20 -0.1
3,481,209 + RR42_RS16070 0.20 +0.7
3,481,209 + RR42_RS16070 0.20 +0.2
3,481,210 - RR42_RS16070 0.21 +0.4
3,481,210 - RR42_RS16070 0.21 -0.3
3,481,483 + RR42_RS16070 0.63 -2.3
3,481,484 - RR42_RS16070 0.63 -0.1
3,481,484 - RR42_RS16070 0.63 +0.0
3,481,484 - RR42_RS16070 0.63 +0.6
3,481,501 + RR42_RS16070 0.65 -0.4
3,481,654 - RR42_RS16070 0.89 -0.1
3,481,654 - RR42_RS16070 0.89 -0.2
3,481,689 - +0.4
3,481,719 - +2.6
3,481,847 + -0.3
3,481,848 - +0.5
3,481,928 - -0.1
3,481,928 - +1.7
3,482,107 + RR42_RS16075 0.12 -0.1
3,482,107 + RR42_RS16075 0.12 +0.3
3,482,108 - RR42_RS16075 0.12 -2.6
3,482,108 - RR42_RS16075 0.12 +0.6
3,482,108 - RR42_RS16075 0.12 -1.1

Or see this region's nucleotide sequence