Experiment: R2A with Nickel (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS10270 and RR42_RS10275 are separated by 138 nucleotides RR42_RS10275 and RR42_RS10280 are separated by 3 nucleotides RR42_RS10280 and RR42_RS10285 are separated by 87 nucleotides RR42_RS10285 and RR42_RS10290 are separated by 25 nucleotides
RR42_RS10270: RR42_RS10270 - hypothetical protein, at 2,199,463 to 2,200,236
_RS10270
RR42_RS10275: RR42_RS10275 - LuxR family transcriptional regulator, at 2,200,375 to 2,201,007
_RS10275
RR42_RS10280: RR42_RS10280 - hypothetical protein, at 2,201,011 to 2,202,153
_RS10280
RR42_RS10285: RR42_RS10285 - hypothetical protein, at 2,202,241 to 2,202,804
_RS10285
RR42_RS10290: RR42_RS10290 - hypothetical protein, at 2,202,830 to 2,203,444
_RS10290
Position (kb)
2201
2202
2203 Strain fitness (log2 ratio)
-2
-1
0
1 at 2200.142 kb on + strand, within RR42_RS10270 at 2200.353 kb on - strand at 2200.461 kb on - strand, within RR42_RS10275 at 2200.461 kb on - strand, within RR42_RS10275 at 2200.525 kb on + strand, within RR42_RS10275 at 2200.548 kb on - strand, within RR42_RS10275 at 2200.548 kb on - strand, within RR42_RS10275 at 2200.634 kb on - strand, within RR42_RS10275 at 2200.707 kb on - strand, within RR42_RS10275 at 2200.707 kb on - strand, within RR42_RS10275 at 2200.707 kb on - strand, within RR42_RS10275 at 2200.742 kb on + strand, within RR42_RS10275 at 2201.012 kb on + strand at 2201.231 kb on - strand, within RR42_RS10280 at 2201.300 kb on + strand, within RR42_RS10280 at 2201.301 kb on - strand, within RR42_RS10280 at 2201.346 kb on + strand, within RR42_RS10280 at 2201.350 kb on - strand, within RR42_RS10280 at 2201.696 kb on - strand, within RR42_RS10280 at 2201.710 kb on - strand, within RR42_RS10280 at 2202.059 kb on + strand at 2202.059 kb on + strand at 2202.059 kb on + strand at 2202.060 kb on - strand at 2202.060 kb on - strand at 2202.234 kb on - strand at 2202.289 kb on - strand at 2202.382 kb on + strand, within RR42_RS10285 at 2202.382 kb on + strand, within RR42_RS10285 at 2202.383 kb on - strand, within RR42_RS10285 at 2202.383 kb on - strand, within RR42_RS10285 at 2202.579 kb on - strand, within RR42_RS10285 at 2202.579 kb on - strand, within RR42_RS10285 at 2202.834 kb on + strand at 2202.834 kb on + strand at 2202.835 kb on - strand at 2202.870 kb on - strand at 2203.016 kb on + strand, within RR42_RS10290
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.25 mM remove 2,200,142 + RR42_RS10270 0.88 +0.2 2,200,353 - -0.1 2,200,461 - RR42_RS10275 0.14 -1.1 2,200,461 - RR42_RS10275 0.14 -0.2 2,200,525 + RR42_RS10275 0.24 -0.4 2,200,548 - RR42_RS10275 0.27 -0.6 2,200,548 - RR42_RS10275 0.27 -0.4 2,200,634 - RR42_RS10275 0.41 -0.3 2,200,707 - RR42_RS10275 0.52 +0.1 2,200,707 - RR42_RS10275 0.52 -0.3 2,200,707 - RR42_RS10275 0.52 +0.2 2,200,742 + RR42_RS10275 0.58 -0.6 2,201,012 + +1.1 2,201,231 - RR42_RS10280 0.19 -1.1 2,201,300 + RR42_RS10280 0.25 -1.6 2,201,301 - RR42_RS10280 0.25 -1.0 2,201,346 + RR42_RS10280 0.29 -2.3 2,201,350 - RR42_RS10280 0.30 -1.6 2,201,696 - RR42_RS10280 0.60 -0.0 2,201,710 - RR42_RS10280 0.61 -0.5 2,202,059 + -0.3 2,202,059 + +1.3 2,202,059 + +0.3 2,202,060 - +1.2 2,202,060 - -0.8 2,202,234 - -0.3 2,202,289 - +0.3 2,202,382 + RR42_RS10285 0.25 -0.3 2,202,382 + RR42_RS10285 0.25 -1.0 2,202,383 - RR42_RS10285 0.25 -0.1 2,202,383 - RR42_RS10285 0.25 +0.3 2,202,579 - RR42_RS10285 0.60 +0.6 2,202,579 - RR42_RS10285 0.60 -0.5 2,202,834 + +1.0 2,202,834 + +0.1 2,202,835 - -0.3 2,202,870 - +0.1 2,203,016 + RR42_RS10290 0.30 -0.6
Or see this region's nucleotide sequence