Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02020

Experiment: R2A with Nickel (II) chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS02015 and RR42_RS02020 are separated by 97 nucleotidesRR42_RS02020 and RR42_RS02025 are separated by 59 nucleotidesRR42_RS02025 and RR42_RS02030 overlap by 4 nucleotides RR42_RS02015: RR42_RS02015 - ribose-phosphate pyrophosphokinase, at 449,464 to 450,417 _RS02015 RR42_RS02020: RR42_RS02020 - tRNA-Gln, at 450,515 to 450,591 _RS02020 RR42_RS02025: RR42_RS02025 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 450,651 to 451,529 _RS02025 RR42_RS02030: RR42_RS02030 - membrane protein, at 451,526 to 452,146 _RS02030 Position (kb) 450 451Strain fitness (log2 ratio) -1 0 1at 450.513 kb on - strandat 450.513 kb on - strandat 450.513 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.25 mM
remove
450,513 - +0.6
450,513 - -0.5
450,513 - -0.4

Or see this region's nucleotide sequence