Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01060

Experiment: R2A with Nickel (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01055 and RR42_RS01060 are separated by 242 nucleotidesRR42_RS01060 and RR42_RS01065 are separated by 92 nucleotides RR42_RS01055: RR42_RS01055 - ABC transporter substrate-binding protein, at 248,416 to 249,402 _RS01055 RR42_RS01060: RR42_RS01060 - peptidase, at 249,645 to 250,181 _RS01060 RR42_RS01065: RR42_RS01065 - ATP-dependent protease ATP-binding subunit HslU, at 250,274 to 251,605 _RS01065 Position (kb) 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 248.683 kb on + strand, within RR42_RS01055at 248.683 kb on + strand, within RR42_RS01055at 248.683 kb on + strand, within RR42_RS01055at 248.704 kb on - strand, within RR42_RS01055at 248.704 kb on - strand, within RR42_RS01055at 248.854 kb on + strand, within RR42_RS01055at 248.854 kb on + strand, within RR42_RS01055at 248.854 kb on + strand, within RR42_RS01055at 248.854 kb on + strand, within RR42_RS01055at 248.855 kb on - strand, within RR42_RS01055at 248.855 kb on - strand, within RR42_RS01055at 248.855 kb on - strand, within RR42_RS01055at 248.856 kb on + strand, within RR42_RS01055at 248.857 kb on - strand, within RR42_RS01055at 248.857 kb on - strand, within RR42_RS01055at 248.971 kb on + strand, within RR42_RS01055at 248.972 kb on - strand, within RR42_RS01055at 248.972 kb on - strand, within RR42_RS01055at 249.082 kb on + strand, within RR42_RS01055at 249.082 kb on + strand, within RR42_RS01055at 249.082 kb on + strand, within RR42_RS01055at 249.082 kb on + strand, within RR42_RS01055at 249.185 kb on - strand, within RR42_RS01055at 249.185 kb on - strand, within RR42_RS01055at 249.391 kb on + strandat 249.392 kb on - strandat 249.524 kb on + strandat 249.524 kb on + strandat 249.524 kb on + strandat 249.524 kb on + strandat 249.524 kb on + strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.526 kb on + strandat 249.526 kb on + strandat 249.526 kb on + strandat 249.527 kb on - strandat 249.527 kb on - strandat 249.527 kb on - strandat 249.527 kb on - strandat 249.527 kb on - strandat 249.614 kb on + strandat 249.614 kb on + strandat 249.614 kb on + strandat 249.614 kb on + strandat 249.614 kb on + strandat 249.614 kb on + strandat 249.654 kb on + strandat 249.654 kb on + strandat 249.654 kb on + strandat 249.654 kb on + strandat 249.655 kb on - strandat 249.655 kb on - strandat 249.665 kb on + strandat 249.665 kb on + strandat 249.665 kb on + strandat 249.666 kb on - strandat 249.666 kb on - strandat 249.666 kb on - strandat 249.734 kb on + strand, within RR42_RS01060at 249.734 kb on + strand, within RR42_RS01060at 249.735 kb on - strand, within RR42_RS01060at 249.735 kb on - strand, within RR42_RS01060at 249.735 kb on - strand, within RR42_RS01060at 249.735 kb on - strand, within RR42_RS01060at 249.735 kb on - strand, within RR42_RS01060at 249.774 kb on + strand, within RR42_RS01060at 249.774 kb on + strand, within RR42_RS01060at 249.774 kb on + strand, within RR42_RS01060at 249.775 kb on - strand, within RR42_RS01060at 249.787 kb on + strand, within RR42_RS01060at 249.788 kb on - strand, within RR42_RS01060at 249.788 kb on - strand, within RR42_RS01060at 249.788 kb on - strand, within RR42_RS01060at 249.861 kb on + strand, within RR42_RS01060at 249.861 kb on + strand, within RR42_RS01060at 249.861 kb on + strand, within RR42_RS01060at 249.861 kb on + strand, within RR42_RS01060at 250.044 kb on + strand, within RR42_RS01060at 250.044 kb on + strand, within RR42_RS01060at 250.045 kb on - strand, within RR42_RS01060at 250.080 kb on - strand, within RR42_RS01060at 250.143 kb on + strandat 250.143 kb on + strandat 250.143 kb on + strandat 250.144 kb on - strandat 250.144 kb on - strandat 250.270 kb on + strandat 250.282 kb on + strandat 250.282 kb on + strandat 250.282 kb on + strandat 250.283 kb on - strandat 250.547 kb on + strand, within RR42_RS01065at 250.547 kb on + strand, within RR42_RS01065at 250.548 kb on - strand, within RR42_RS01065at 250.548 kb on - strand, within RR42_RS01065at 250.548 kb on - strand, within RR42_RS01065at 250.548 kb on - strand, within RR42_RS01065at 251.153 kb on + strand, within RR42_RS01065at 251.153 kb on + strand, within RR42_RS01065at 251.154 kb on - strand, within RR42_RS01065at 251.154 kb on - strand, within RR42_RS01065at 251.154 kb on - strand, within RR42_RS01065

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.25 mM
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248,683 + RR42_RS01055 0.27 -0.4
248,683 + RR42_RS01055 0.27 -0.5
248,683 + RR42_RS01055 0.27 -0.6
248,704 - RR42_RS01055 0.29 -0.4
248,704 - RR42_RS01055 0.29 +0.9
248,854 + RR42_RS01055 0.44 +0.4
248,854 + RR42_RS01055 0.44 -1.2
248,854 + RR42_RS01055 0.44 +0.6
248,854 + RR42_RS01055 0.44 +0.0
248,855 - RR42_RS01055 0.44 +0.7
248,855 - RR42_RS01055 0.44 -0.2
248,855 - RR42_RS01055 0.44 +0.1
248,856 + RR42_RS01055 0.45 -0.4
248,857 - RR42_RS01055 0.45 -2.2
248,857 - RR42_RS01055 0.45 +0.4
248,971 + RR42_RS01055 0.56 -0.3
248,972 - RR42_RS01055 0.56 -0.4
248,972 - RR42_RS01055 0.56 +0.4
249,082 + RR42_RS01055 0.67 +0.4
249,082 + RR42_RS01055 0.67 -0.0
249,082 + RR42_RS01055 0.67 -0.3
249,082 + RR42_RS01055 0.67 -0.4
249,185 - RR42_RS01055 0.78 +0.7
249,185 - RR42_RS01055 0.78 +0.7
249,391 + +0.7
249,392 - +0.2
249,524 + -0.1
249,524 + +0.0
249,524 + -0.2
249,524 + +0.5
249,524 + +0.2
249,525 - -0.3
249,525 - -0.1
249,525 - +0.0
249,525 - -0.5
249,525 - +0.1
249,525 - -0.2
249,525 - +0.1
249,525 - -1.8
249,526 + -0.4
249,526 + +0.9
249,526 + +0.7
249,527 - -0.6
249,527 - +0.8
249,527 - -0.8
249,527 - -0.2
249,527 - -0.6
249,614 + +0.4
249,614 + +0.3
249,614 + +0.3
249,614 + -1.6
249,614 + -0.2
249,614 + +1.4
249,654 + +0.1
249,654 + -1.5
249,654 + -1.6
249,654 + -1.1
249,655 - +0.5
249,655 - +0.2
249,665 + +1.9
249,665 + +0.4
249,665 + +0.2
249,666 - +0.2
249,666 - +1.5
249,666 - -0.3
249,734 + RR42_RS01060 0.17 -0.9
249,734 + RR42_RS01060 0.17 -1.9
249,735 - RR42_RS01060 0.17 -0.8
249,735 - RR42_RS01060 0.17 -1.1
249,735 - RR42_RS01060 0.17 -0.8
249,735 - RR42_RS01060 0.17 -2.4
249,735 - RR42_RS01060 0.17 -0.4
249,774 + RR42_RS01060 0.24 -1.2
249,774 + RR42_RS01060 0.24 +0.4
249,774 + RR42_RS01060 0.24 -1.2
249,775 - RR42_RS01060 0.24 -0.4
249,787 + RR42_RS01060 0.26 -3.1
249,788 - RR42_RS01060 0.27 -0.3
249,788 - RR42_RS01060 0.27 -0.9
249,788 - RR42_RS01060 0.27 -0.7
249,861 + RR42_RS01060 0.40 -0.0
249,861 + RR42_RS01060 0.40 +0.3
249,861 + RR42_RS01060 0.40 -0.4
249,861 + RR42_RS01060 0.40 +0.1
250,044 + RR42_RS01060 0.74 -0.9
250,044 + RR42_RS01060 0.74 -1.0
250,045 - RR42_RS01060 0.74 -0.1
250,080 - RR42_RS01060 0.81 -1.6
250,143 + +0.5
250,143 + -0.2
250,143 + -0.8
250,144 - -1.5
250,144 - -0.5
250,270 + +0.8
250,282 + +0.3
250,282 + -2.4
250,282 + -2.1
250,283 - -0.8
250,547 + RR42_RS01065 0.20 -0.4
250,547 + RR42_RS01065 0.20 -0.1
250,548 - RR42_RS01065 0.21 -0.3
250,548 - RR42_RS01065 0.21 -2.0
250,548 - RR42_RS01065 0.21 +0.3
250,548 - RR42_RS01065 0.21 -0.3
251,153 + RR42_RS01065 0.66 -1.6
251,153 + RR42_RS01065 0.66 -0.4
251,154 - RR42_RS01065 0.66 -0.2
251,154 - RR42_RS01065 0.66 -0.6
251,154 - RR42_RS01065 0.66 -1.6

Or see this region's nucleotide sequence