Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4118

Experiment: LB, pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4117 and Ac3H11_4118 are separated by 133 nucleotidesAc3H11_4118 and Ac3H11_4119 are separated by 14 nucleotides Ac3H11_4117 - FIG074102: hypothetical protein, at 369,964 to 370,869 _4117 Ac3H11_4118 - Far-related protein, at 371,003 to 371,893 _4118 Ac3H11_4119 - Integral membrane protein, at 371,908 to 372,600 _4119 Position (kb) 371 372Strain fitness (log2 ratio) -2 -1 0 1 2at 370.007 kb on + strandat 370.061 kb on + strand, within Ac3H11_4117at 370.062 kb on - strand, within Ac3H11_4117at 370.062 kb on - strand, within Ac3H11_4117at 370.062 kb on - strand, within Ac3H11_4117at 370.062 kb on - strand, within Ac3H11_4117at 370.072 kb on + strand, within Ac3H11_4117at 370.072 kb on + strand, within Ac3H11_4117at 370.073 kb on - strand, within Ac3H11_4117at 370.073 kb on - strand, within Ac3H11_4117at 370.073 kb on - strand, within Ac3H11_4117at 370.073 kb on - strand, within Ac3H11_4117at 370.073 kb on - strand, within Ac3H11_4117at 370.076 kb on + strand, within Ac3H11_4117at 370.076 kb on + strand, within Ac3H11_4117at 370.076 kb on + strand, within Ac3H11_4117at 370.076 kb on + strand, within Ac3H11_4117at 370.076 kb on + strand, within Ac3H11_4117at 370.077 kb on - strand, within Ac3H11_4117at 370.077 kb on - strand, within Ac3H11_4117at 370.077 kb on - strand, within Ac3H11_4117at 370.077 kb on - strand, within Ac3H11_4117at 370.085 kb on + strand, within Ac3H11_4117at 370.085 kb on + strand, within Ac3H11_4117at 370.085 kb on + strand, within Ac3H11_4117at 370.085 kb on + strand, within Ac3H11_4117at 370.086 kb on - strand, within Ac3H11_4117at 370.086 kb on - strand, within Ac3H11_4117at 370.086 kb on - strand, within Ac3H11_4117at 370.086 kb on - strand, within Ac3H11_4117at 370.086 kb on - strand, within Ac3H11_4117at 370.086 kb on - strand, within Ac3H11_4117at 370.086 kb on - strand, within Ac3H11_4117at 370.174 kb on + strand, within Ac3H11_4117at 370.175 kb on - strand, within Ac3H11_4117at 370.175 kb on - strand, within Ac3H11_4117at 370.202 kb on + strand, within Ac3H11_4117at 370.202 kb on + strand, within Ac3H11_4117at 370.202 kb on + strand, within Ac3H11_4117at 370.202 kb on + strand, within Ac3H11_4117at 370.203 kb on - strand, within Ac3H11_4117at 370.203 kb on - strand, within Ac3H11_4117at 370.203 kb on - strand, within Ac3H11_4117at 370.203 kb on - strand, within Ac3H11_4117at 370.203 kb on - strand, within Ac3H11_4117at 370.203 kb on - strand, within Ac3H11_4117at 370.203 kb on - strand, within Ac3H11_4117at 370.203 kb on - strand, within Ac3H11_4117at 370.319 kb on + strand, within Ac3H11_4117at 370.319 kb on + strand, within Ac3H11_4117at 370.319 kb on + strand, within Ac3H11_4117at 370.319 kb on + strand, within Ac3H11_4117at 370.320 kb on - strand, within Ac3H11_4117at 370.320 kb on - strand, within Ac3H11_4117at 370.320 kb on - strand, within Ac3H11_4117at 370.343 kb on + strand, within Ac3H11_4117at 370.343 kb on + strand, within Ac3H11_4117at 370.343 kb on + strand, within Ac3H11_4117at 370.344 kb on - strand, within Ac3H11_4117at 370.344 kb on - strand, within Ac3H11_4117at 370.344 kb on - strand, within Ac3H11_4117at 370.524 kb on - strand, within Ac3H11_4117at 370.524 kb on - strand, within Ac3H11_4117at 370.582 kb on - strand, within Ac3H11_4117at 370.641 kb on + strand, within Ac3H11_4117at 370.641 kb on + strand, within Ac3H11_4117at 370.642 kb on - strand, within Ac3H11_4117at 370.642 kb on - strand, within Ac3H11_4117at 370.642 kb on - strand, within Ac3H11_4117at 370.642 kb on - strand, within Ac3H11_4117at 370.913 kb on + strandat 370.913 kb on + strandat 370.913 kb on + strandat 370.913 kb on + strandat 370.913 kb on + strandat 370.914 kb on - strandat 370.914 kb on - strandat 370.914 kb on - strandat 370.914 kb on - strandat 370.914 kb on - strandat 370.914 kb on - strandat 370.915 kb on + strandat 370.915 kb on + strandat 370.916 kb on - strandat 371.171 kb on + strand, within Ac3H11_4118at 371.171 kb on + strand, within Ac3H11_4118at 371.171 kb on + strand, within Ac3H11_4118at 371.171 kb on + strand, within Ac3H11_4118at 371.171 kb on + strand, within Ac3H11_4118at 371.172 kb on - strand, within Ac3H11_4118at 371.172 kb on - strand, within Ac3H11_4118at 371.172 kb on - strand, within Ac3H11_4118at 371.186 kb on + strand, within Ac3H11_4118at 371.186 kb on + strand, within Ac3H11_4118at 371.236 kb on - strand, within Ac3H11_4118at 371.354 kb on + strand, within Ac3H11_4118at 371.429 kb on + strand, within Ac3H11_4118at 371.429 kb on + strand, within Ac3H11_4118at 371.429 kb on + strand, within Ac3H11_4118at 371.429 kb on + strand, within Ac3H11_4118at 371.430 kb on - strand, within Ac3H11_4118at 371.481 kb on - strand, within Ac3H11_4118at 371.481 kb on - strand, within Ac3H11_4118at 371.481 kb on - strand, within Ac3H11_4118at 371.481 kb on - strand, within Ac3H11_4118at 371.666 kb on + strand, within Ac3H11_4118at 371.675 kb on + strand, within Ac3H11_4118at 372.011 kb on - strand, within Ac3H11_4119at 372.011 kb on - strand, within Ac3H11_4119at 372.052 kb on + strand, within Ac3H11_4119at 372.053 kb on - strand, within Ac3H11_4119at 372.053 kb on - strand, within Ac3H11_4119at 372.053 kb on - strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.382 kb on + strand, within Ac3H11_4119at 372.383 kb on - strand, within Ac3H11_4119at 372.383 kb on - strand, within Ac3H11_4119at 372.383 kb on - strand, within Ac3H11_4119at 372.383 kb on - strand, within Ac3H11_4119at 372.383 kb on - strand, within Ac3H11_4119at 372.383 kb on - strand, within Ac3H11_4119at 372.383 kb on - strand, within Ac3H11_4119at 372.383 kb on - strand, within Ac3H11_4119at 372.535 kb on + strandat 372.535 kb on + strandat 372.535 kb on + strandat 372.535 kb on + strandat 372.535 kb on + strandat 372.536 kb on - strandat 372.536 kb on - strandat 372.536 kb on - strandat 372.536 kb on - strandat 372.536 kb on - strandat 372.536 kb on - strandat 372.673 kb on + strandat 372.694 kb on + strandat 372.694 kb on + strandat 372.694 kb on + strandat 372.694 kb on + strandat 372.694 kb on + strandat 372.695 kb on - strandat 372.695 kb on - strandat 372.695 kb on - strandat 372.696 kb on + strandat 372.696 kb on + strandat 372.696 kb on + strandat 372.696 kb on + strandat 372.696 kb on + strandat 372.697 kb on - strandat 372.697 kb on - strandat 372.697 kb on - strandat 372.697 kb on - strandat 372.860 kb on + strandat 372.860 kb on + strandat 372.860 kb on + strandat 372.860 kb on + strandat 372.860 kb on + strandat 372.860 kb on + strandat 372.860 kb on + strandat 372.861 kb on - strandat 372.861 kb on - strandat 372.861 kb on - strandat 372.861 kb on - strandat 372.861 kb on - strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.862 kb on + strandat 372.863 kb on - strandat 372.863 kb on - strandat 372.863 kb on - strandat 372.863 kb on - strandat 372.863 kb on - strandat 372.863 kb on - strandat 372.863 kb on - strandat 372.863 kb on - strandat 372.863 kb on - strandat 372.864 kb on + strandat 372.864 kb on + strandat 372.865 kb on - strandat 372.865 kb on - strandat 372.865 kb on - strandat 372.865 kb on - strandat 372.865 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
remove
370,007 + -1.0
370,061 + Ac3H11_4117 0.11 +1.4
370,062 - Ac3H11_4117 0.11 -0.2
370,062 - Ac3H11_4117 0.11 +0.4
370,062 - Ac3H11_4117 0.11 +0.3
370,062 - Ac3H11_4117 0.11 +0.4
370,072 + Ac3H11_4117 0.12 +0.3
370,072 + Ac3H11_4117 0.12 +0.4
370,073 - Ac3H11_4117 0.12 +0.4
370,073 - Ac3H11_4117 0.12 +0.8
370,073 - Ac3H11_4117 0.12 +0.9
370,073 - Ac3H11_4117 0.12 -0.8
370,073 - Ac3H11_4117 0.12 -0.8
370,076 + Ac3H11_4117 0.12 +1.0
370,076 + Ac3H11_4117 0.12 -0.4
370,076 + Ac3H11_4117 0.12 +0.7
370,076 + Ac3H11_4117 0.12 -0.2
370,076 + Ac3H11_4117 0.12 +0.2
370,077 - Ac3H11_4117 0.12 +0.3
370,077 - Ac3H11_4117 0.12 +0.9
370,077 - Ac3H11_4117 0.12 +1.1
370,077 - Ac3H11_4117 0.12 +0.3
370,085 + Ac3H11_4117 0.13 +0.1
370,085 + Ac3H11_4117 0.13 +0.8
370,085 + Ac3H11_4117 0.13 -0.8
370,085 + Ac3H11_4117 0.13 -0.0
370,086 - Ac3H11_4117 0.13 +0.6
370,086 - Ac3H11_4117 0.13 +0.1
370,086 - Ac3H11_4117 0.13 -0.1
370,086 - Ac3H11_4117 0.13 +0.2
370,086 - Ac3H11_4117 0.13 -0.1
370,086 - Ac3H11_4117 0.13 +0.1
370,086 - Ac3H11_4117 0.13 +0.5
370,174 + Ac3H11_4117 0.23 +0.7
370,175 - Ac3H11_4117 0.23 +1.7
370,175 - Ac3H11_4117 0.23 -0.5
370,202 + Ac3H11_4117 0.26 -0.5
370,202 + Ac3H11_4117 0.26 +0.2
370,202 + Ac3H11_4117 0.26 +0.2
370,202 + Ac3H11_4117 0.26 +1.8
370,203 - Ac3H11_4117 0.26 +0.5
370,203 - Ac3H11_4117 0.26 -1.1
370,203 - Ac3H11_4117 0.26 +0.3
370,203 - Ac3H11_4117 0.26 -1.0
370,203 - Ac3H11_4117 0.26 +0.3
370,203 - Ac3H11_4117 0.26 +0.2
370,203 - Ac3H11_4117 0.26 +0.3
370,203 - Ac3H11_4117 0.26 -0.1
370,319 + Ac3H11_4117 0.39 +0.8
370,319 + Ac3H11_4117 0.39 +0.3
370,319 + Ac3H11_4117 0.39 +0.6
370,319 + Ac3H11_4117 0.39 -0.0
370,320 - Ac3H11_4117 0.39 +0.3
370,320 - Ac3H11_4117 0.39 +0.1
370,320 - Ac3H11_4117 0.39 +0.4
370,343 + Ac3H11_4117 0.42 +1.1
370,343 + Ac3H11_4117 0.42 +0.1
370,343 + Ac3H11_4117 0.42 -0.5
370,344 - Ac3H11_4117 0.42 +0.8
370,344 - Ac3H11_4117 0.42 -1.0
370,344 - Ac3H11_4117 0.42 +0.2
370,524 - Ac3H11_4117 0.62 +0.4
370,524 - Ac3H11_4117 0.62 +0.4
370,582 - Ac3H11_4117 0.68 -0.2
370,641 + Ac3H11_4117 0.75 +0.4
370,641 + Ac3H11_4117 0.75 -0.3
370,642 - Ac3H11_4117 0.75 -0.6
370,642 - Ac3H11_4117 0.75 -0.4
370,642 - Ac3H11_4117 0.75 -0.0
370,642 - Ac3H11_4117 0.75 +0.2
370,913 + +0.3
370,913 + +1.3
370,913 + -2.7
370,913 + +1.4
370,913 + -0.5
370,914 - +0.5
370,914 - -0.7
370,914 - +0.5
370,914 - -0.1
370,914 - +0.4
370,914 - +0.3
370,915 + +0.6
370,915 + +0.4
370,916 - -0.2
371,171 + Ac3H11_4118 0.19 +1.1
371,171 + Ac3H11_4118 0.19 +0.4
371,171 + Ac3H11_4118 0.19 +0.5
371,171 + Ac3H11_4118 0.19 -0.2
371,171 + Ac3H11_4118 0.19 +0.5
371,172 - Ac3H11_4118 0.19 +0.9
371,172 - Ac3H11_4118 0.19 -0.5
371,172 - Ac3H11_4118 0.19 +0.8
371,186 + Ac3H11_4118 0.21 +0.5
371,186 + Ac3H11_4118 0.21 +2.6
371,236 - Ac3H11_4118 0.26 +0.4
371,354 + Ac3H11_4118 0.39 +0.5
371,429 + Ac3H11_4118 0.48 +0.3
371,429 + Ac3H11_4118 0.48 +0.5
371,429 + Ac3H11_4118 0.48 +0.9
371,429 + Ac3H11_4118 0.48 +1.1
371,430 - Ac3H11_4118 0.48 -0.3
371,481 - Ac3H11_4118 0.54 +0.5
371,481 - Ac3H11_4118 0.54 +0.8
371,481 - Ac3H11_4118 0.54 +0.4
371,481 - Ac3H11_4118 0.54 +0.1
371,666 + Ac3H11_4118 0.74 +0.1
371,675 + Ac3H11_4118 0.75 +0.8
372,011 - Ac3H11_4119 0.15 +0.4
372,011 - Ac3H11_4119 0.15 +0.3
372,052 + Ac3H11_4119 0.21 -0.0
372,053 - Ac3H11_4119 0.21 +0.2
372,053 - Ac3H11_4119 0.21 +0.3
372,053 - Ac3H11_4119 0.21 -0.2
372,382 + Ac3H11_4119 0.68 -0.3
372,382 + Ac3H11_4119 0.68 -1.5
372,382 + Ac3H11_4119 0.68 +0.2
372,382 + Ac3H11_4119 0.68 +0.9
372,382 + Ac3H11_4119 0.68 +0.7
372,382 + Ac3H11_4119 0.68 +0.4
372,382 + Ac3H11_4119 0.68 +0.3
372,382 + Ac3H11_4119 0.68 -0.7
372,382 + Ac3H11_4119 0.68 +0.4
372,382 + Ac3H11_4119 0.68 -0.0
372,382 + Ac3H11_4119 0.68 +0.3
372,383 - Ac3H11_4119 0.69 -1.1
372,383 - Ac3H11_4119 0.69 +0.4
372,383 - Ac3H11_4119 0.69 +2.2
372,383 - Ac3H11_4119 0.69 +1.2
372,383 - Ac3H11_4119 0.69 +0.2
372,383 - Ac3H11_4119 0.69 +0.3
372,383 - Ac3H11_4119 0.69 +1.3
372,383 - Ac3H11_4119 0.69 -1.5
372,535 + -0.8
372,535 + +0.3
372,535 + +0.0
372,535 + -0.7
372,535 + +0.1
372,536 - +0.1
372,536 - +0.0
372,536 - +1.0
372,536 - +0.7
372,536 - -0.1
372,536 - +1.2
372,673 + -0.4
372,694 + -0.5
372,694 + -0.8
372,694 + +0.2
372,694 + +1.8
372,694 + -0.3
372,695 - +0.8
372,695 - -0.6
372,695 - -0.1
372,696 + +0.9
372,696 + +0.6
372,696 + +0.9
372,696 + +0.3
372,696 + +1.0
372,697 - +0.6
372,697 - -0.2
372,697 - +0.1
372,697 - -0.4
372,860 + -0.2
372,860 + -0.8
372,860 + +0.2
372,860 + +0.9
372,860 + +0.2
372,860 + -0.1
372,860 + -0.0
372,861 - +0.3
372,861 - +0.6
372,861 - -0.4
372,861 - -0.0
372,861 - +0.3
372,862 + +0.5
372,862 + +0.2
372,862 + -0.0
372,862 + -0.3
372,862 + -0.3
372,862 + -0.4
372,862 + -0.2
372,862 + +0.7
372,862 + +0.4
372,862 + -1.3
372,862 + +0.1
372,862 + +0.2
372,862 + +0.5
372,862 + -0.0
372,862 + +0.6
372,862 + +0.3
372,862 + +0.0
372,862 + +1.1
372,862 + -0.1
372,863 - +0.4
372,863 - +1.5
372,863 - +0.5
372,863 - +0.2
372,863 - +0.5
372,863 - +0.5
372,863 - -0.3
372,863 - +0.5
372,863 - -0.3
372,864 + +0.4
372,864 + +0.1
372,865 - -0.8
372,865 - +0.1
372,865 - +0.3
372,865 - +0.1
372,865 - -1.0

Or see this region's nucleotide sequence