Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2345

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2343 and Ac3H11_2344 overlap by 23 nucleotidesAc3H11_2344 and Ac3H11_2345 are separated by 66 nucleotidesAc3H11_2345 and Ac3H11_2346 are separated by 142 nucleotides Ac3H11_2343 - FIG00978337: hypothetical protein, at 598,768 to 599,256 _2343 Ac3H11_2344 - Transcriptional activator MetR, at 599,234 to 600,160 _2344 Ac3H11_2345 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (EC 2.1.1.14), at 600,227 to 602,659 _2345 Ac3H11_2346 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 602,802 to 603,755 _2346 Position (kb) 600 601 602 603Strain fitness (log2 ratio) -2 -1 0 1 2 3at 599.236 kb on - strandat 599.236 kb on - strandat 599.300 kb on + strandat 599.300 kb on + strandat 599.300 kb on + strandat 599.300 kb on + strandat 599.301 kb on - strandat 599.301 kb on - strandat 599.301 kb on - strandat 599.304 kb on + strandat 599.304 kb on + strandat 599.305 kb on - strandat 599.305 kb on - strandat 599.378 kb on - strand, within Ac3H11_2344at 599.378 kb on - strand, within Ac3H11_2344at 599.388 kb on + strand, within Ac3H11_2344at 599.388 kb on + strand, within Ac3H11_2344at 599.403 kb on + strand, within Ac3H11_2344at 599.562 kb on + strand, within Ac3H11_2344at 599.562 kb on + strand, within Ac3H11_2344at 599.563 kb on - strand, within Ac3H11_2344at 599.673 kb on + strand, within Ac3H11_2344at 599.673 kb on + strand, within Ac3H11_2344at 599.673 kb on + strand, within Ac3H11_2344at 599.673 kb on + strand, within Ac3H11_2344at 600.292 kb on - strandat 600.516 kb on + strand, within Ac3H11_2345at 600.516 kb on + strand, within Ac3H11_2345at 600.517 kb on - strand, within Ac3H11_2345at 600.517 kb on - strand, within Ac3H11_2345at 600.593 kb on + strand, within Ac3H11_2345at 600.725 kb on + strand, within Ac3H11_2345at 600.725 kb on + strand, within Ac3H11_2345at 600.726 kb on - strand, within Ac3H11_2345at 600.726 kb on - strand, within Ac3H11_2345at 600.731 kb on + strand, within Ac3H11_2345at 600.731 kb on + strand, within Ac3H11_2345at 600.731 kb on + strand, within Ac3H11_2345at 600.732 kb on - strand, within Ac3H11_2345at 600.929 kb on + strand, within Ac3H11_2345at 601.002 kb on + strand, within Ac3H11_2345at 601.088 kb on + strand, within Ac3H11_2345at 601.088 kb on + strand, within Ac3H11_2345at 601.088 kb on + strand, within Ac3H11_2345at 601.089 kb on - strand, within Ac3H11_2345at 601.089 kb on - strand, within Ac3H11_2345at 601.263 kb on + strandat 601.264 kb on - strand, within Ac3H11_2345at 601.267 kb on + strand, within Ac3H11_2345at 601.267 kb on + strand, within Ac3H11_2345at 601.267 kb on + strand, within Ac3H11_2345at 601.267 kb on + strand, within Ac3H11_2345at 601.267 kb on + strand, within Ac3H11_2345at 601.267 kb on + strand, within Ac3H11_2345at 601.268 kb on - strand, within Ac3H11_2345at 601.268 kb on - strand, within Ac3H11_2345at 601.268 kb on - strand, within Ac3H11_2345at 601.268 kb on - strand, within Ac3H11_2345at 601.745 kb on + strand, within Ac3H11_2345at 601.745 kb on + strand, within Ac3H11_2345at 601.745 kb on + strand, within Ac3H11_2345at 601.745 kb on + strand, within Ac3H11_2345at 601.746 kb on - strand, within Ac3H11_2345at 601.746 kb on - strand, within Ac3H11_2345at 601.746 kb on - strand, within Ac3H11_2345at 601.746 kb on - strand, within Ac3H11_2345at 601.746 kb on - strand, within Ac3H11_2345at 601.746 kb on - strand, within Ac3H11_2345at 601.746 kb on - strand, within Ac3H11_2345at 601.837 kb on + strand, within Ac3H11_2345at 601.854 kb on - strand, within Ac3H11_2345at 601.854 kb on - strand, within Ac3H11_2345at 601.886 kb on - strand, within Ac3H11_2345at 601.910 kb on + strand, within Ac3H11_2345at 601.910 kb on + strand, within Ac3H11_2345at 601.910 kb on + strand, within Ac3H11_2345at 601.911 kb on - strand, within Ac3H11_2345at 601.911 kb on - strand, within Ac3H11_2345at 601.911 kb on - strand, within Ac3H11_2345at 601.911 kb on - strand, within Ac3H11_2345at 601.944 kb on - strand, within Ac3H11_2345at 601.991 kb on + strand, within Ac3H11_2345at 601.991 kb on + strand, within Ac3H11_2345at 602.225 kb on + strand, within Ac3H11_2345at 602.225 kb on + strand, within Ac3H11_2345at 602.225 kb on + strand, within Ac3H11_2345at 602.226 kb on - strand, within Ac3H11_2345at 602.226 kb on - strand, within Ac3H11_2345at 602.307 kb on - strand, within Ac3H11_2345at 602.307 kb on - strand, within Ac3H11_2345at 602.307 kb on - strand, within Ac3H11_2345at 602.447 kb on + strandat 602.447 kb on + strandat 602.447 kb on + strandat 602.690 kb on + strandat 602.774 kb on - strandat 602.774 kb on - strandat 602.791 kb on - strandat 602.803 kb on + strandat 602.803 kb on + strandat 602.804 kb on - strandat 602.903 kb on - strand, within Ac3H11_2346at 602.903 kb on - strand, within Ac3H11_2346at 602.965 kb on + strand, within Ac3H11_2346at 602.965 kb on + strand, within Ac3H11_2346at 602.965 kb on + strand, within Ac3H11_2346at 602.965 kb on + strand, within Ac3H11_2346at 602.966 kb on - strand, within Ac3H11_2346at 603.115 kb on + strand, within Ac3H11_2346at 603.115 kb on + strand, within Ac3H11_2346at 603.115 kb on + strand, within Ac3H11_2346at 603.115 kb on + strand, within Ac3H11_2346at 603.116 kb on - strand, within Ac3H11_2346at 603.148 kb on + strand, within Ac3H11_2346at 603.148 kb on + strand, within Ac3H11_2346at 603.148 kb on + strand, within Ac3H11_2346at 603.149 kb on - strand, within Ac3H11_2346at 603.149 kb on - strand, within Ac3H11_2346at 603.331 kb on + strand, within Ac3H11_2346at 603.331 kb on + strand, within Ac3H11_2346at 603.331 kb on + strand, within Ac3H11_2346at 603.331 kb on + strand, within Ac3H11_2346at 603.331 kb on + strand, within Ac3H11_2346at 603.331 kb on + strand, within Ac3H11_2346at 603.332 kb on - strand, within Ac3H11_2346at 603.332 kb on - strand, within Ac3H11_2346at 603.332 kb on - strand, within Ac3H11_2346at 603.332 kb on - strand, within Ac3H11_2346at 603.332 kb on - strand, within Ac3H11_2346

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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599,236 - -1.1
599,236 - +0.5
599,300 + +0.2
599,300 + +0.4
599,300 + +1.0
599,300 + +0.2
599,301 - -0.9
599,301 - -0.1
599,301 - +0.1
599,304 + +0.1
599,304 + +0.3
599,305 - +0.3
599,305 - -0.2
599,378 - Ac3H11_2344 0.16 +0.8
599,378 - Ac3H11_2344 0.16 -0.5
599,388 + Ac3H11_2344 0.17 -1.1
599,388 + Ac3H11_2344 0.17 -0.0
599,403 + Ac3H11_2344 0.18 -1.3
599,562 + Ac3H11_2344 0.35 -0.1
599,562 + Ac3H11_2344 0.35 +1.6
599,563 - Ac3H11_2344 0.35 +0.3
599,673 + Ac3H11_2344 0.47 +0.1
599,673 + Ac3H11_2344 0.47 +0.2
599,673 + Ac3H11_2344 0.47 -0.2
599,673 + Ac3H11_2344 0.47 -0.0
600,292 - +2.8
600,516 + Ac3H11_2345 0.12 -0.6
600,516 + Ac3H11_2345 0.12 +0.0
600,517 - Ac3H11_2345 0.12 +0.5
600,517 - Ac3H11_2345 0.12 -0.7
600,593 + Ac3H11_2345 0.15 +0.7
600,725 + Ac3H11_2345 0.20 -0.0
600,725 + Ac3H11_2345 0.20 -0.4
600,726 - Ac3H11_2345 0.21 -0.6
600,726 - Ac3H11_2345 0.21 -0.2
600,731 + Ac3H11_2345 0.21 -0.2
600,731 + Ac3H11_2345 0.21 +0.9
600,731 + Ac3H11_2345 0.21 -0.6
600,732 - Ac3H11_2345 0.21 -0.9
600,929 + Ac3H11_2345 0.29 +0.4
601,002 + Ac3H11_2345 0.32 +0.4
601,088 + Ac3H11_2345 0.35 +0.8
601,088 + Ac3H11_2345 0.35 -0.7
601,088 + Ac3H11_2345 0.35 +0.5
601,089 - Ac3H11_2345 0.35 -0.0
601,089 - Ac3H11_2345 0.35 -0.4
601,263 + +1.9
601,264 - Ac3H11_2345 0.43 +0.1
601,267 + Ac3H11_2345 0.43 +0.5
601,267 + Ac3H11_2345 0.43 -0.7
601,267 + Ac3H11_2345 0.43 +2.2
601,267 + Ac3H11_2345 0.43 +1.1
601,267 + Ac3H11_2345 0.43 +0.2
601,267 + Ac3H11_2345 0.43 +0.2
601,268 - Ac3H11_2345 0.43 -0.2
601,268 - Ac3H11_2345 0.43 -2.1
601,268 - Ac3H11_2345 0.43 +0.3
601,268 - Ac3H11_2345 0.43 -0.9
601,745 + Ac3H11_2345 0.62 -0.3
601,745 + Ac3H11_2345 0.62 +0.3
601,745 + Ac3H11_2345 0.62 -0.3
601,745 + Ac3H11_2345 0.62 +0.0
601,746 - Ac3H11_2345 0.62 +0.5
601,746 - Ac3H11_2345 0.62 -0.2
601,746 - Ac3H11_2345 0.62 -0.0
601,746 - Ac3H11_2345 0.62 -0.3
601,746 - Ac3H11_2345 0.62 +0.1
601,746 - Ac3H11_2345 0.62 -0.1
601,746 - Ac3H11_2345 0.62 +0.5
601,837 + Ac3H11_2345 0.66 +0.4
601,854 - Ac3H11_2345 0.67 +0.1
601,854 - Ac3H11_2345 0.67 +0.6
601,886 - Ac3H11_2345 0.68 +0.4
601,910 + Ac3H11_2345 0.69 -0.6
601,910 + Ac3H11_2345 0.69 -0.6
601,910 + Ac3H11_2345 0.69 +0.0
601,911 - Ac3H11_2345 0.69 -0.7
601,911 - Ac3H11_2345 0.69 -1.2
601,911 - Ac3H11_2345 0.69 +0.3
601,911 - Ac3H11_2345 0.69 -0.4
601,944 - Ac3H11_2345 0.71 -1.0
601,991 + Ac3H11_2345 0.73 -0.4
601,991 + Ac3H11_2345 0.73 +0.0
602,225 + Ac3H11_2345 0.82 +0.0
602,225 + Ac3H11_2345 0.82 -0.6
602,225 + Ac3H11_2345 0.82 -0.2
602,226 - Ac3H11_2345 0.82 -1.8
602,226 - Ac3H11_2345 0.82 -0.2
602,307 - Ac3H11_2345 0.85 +0.9
602,307 - Ac3H11_2345 0.85 +0.2
602,307 - Ac3H11_2345 0.85 +0.3
602,447 + -1.4
602,447 + -0.2
602,447 + -0.2
602,690 + +1.0
602,774 - -0.1
602,774 - -1.0
602,791 - -0.1
602,803 + -0.9
602,803 + +0.6
602,804 - +0.3
602,903 - Ac3H11_2346 0.11 -0.4
602,903 - Ac3H11_2346 0.11 -0.1
602,965 + Ac3H11_2346 0.17 -1.0
602,965 + Ac3H11_2346 0.17 +0.1
602,965 + Ac3H11_2346 0.17 -0.2
602,965 + Ac3H11_2346 0.17 -0.8
602,966 - Ac3H11_2346 0.17 -0.3
603,115 + Ac3H11_2346 0.33 -0.7
603,115 + Ac3H11_2346 0.33 +0.7
603,115 + Ac3H11_2346 0.33 +0.6
603,115 + Ac3H11_2346 0.33 -0.7
603,116 - Ac3H11_2346 0.33 -0.1
603,148 + Ac3H11_2346 0.36 -0.2
603,148 + Ac3H11_2346 0.36 -0.1
603,148 + Ac3H11_2346 0.36 -0.5
603,149 - Ac3H11_2346 0.36 +0.8
603,149 - Ac3H11_2346 0.36 -1.3
603,331 + Ac3H11_2346 0.55 -0.4
603,331 + Ac3H11_2346 0.55 +0.0
603,331 + Ac3H11_2346 0.55 +0.1
603,331 + Ac3H11_2346 0.55 -0.2
603,331 + Ac3H11_2346 0.55 -0.9
603,331 + Ac3H11_2346 0.55 +0.9
603,332 - Ac3H11_2346 0.56 +0.4
603,332 - Ac3H11_2346 0.56 +0.7
603,332 - Ac3H11_2346 0.56 +0.5
603,332 - Ac3H11_2346 0.56 +0.3
603,332 - Ac3H11_2346 0.56 -0.9

Or see this region's nucleotide sequence