Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1904

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1903 and Ac3H11_1904 are separated by 305 nucleotidesAc3H11_1904 and Ac3H11_1905 are separated by 76 nucleotidesAc3H11_1905 and Ac3H11_1906 are separated by 203 nucleotides Ac3H11_1903 - glycosyl transferase, family 2, at 110,207 to 111,199 _1903 Ac3H11_1904 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89), at 111,505 to 111,846 _1904 Ac3H11_1905 - Lytic transglycosylase, catalytic, at 111,923 to 112,564 _1905 Ac3H11_1906 - Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-), at 112,768 to 113,871 _1906 Position (kb) 111 112Strain fitness (log2 ratio) -1 0 1at 111.798 kb on + strand, within Ac3H11_1904at 111.798 kb on + strand, within Ac3H11_1904at 111.862 kb on + strandat 111.862 kb on + strandat 111.863 kb on - strandat 111.872 kb on + strandat 111.872 kb on + strandat 111.872 kb on + strandat 111.872 kb on + strandat 111.872 kb on + strandat 111.918 kb on + strandat 112.209 kb on + strand, within Ac3H11_1905at 112.495 kb on - strand, within Ac3H11_1905at 112.520 kb on + strandat 112.550 kb on - strandat 112.563 kb on - strandat 112.573 kb on + strandat 112.573 kb on + strandat 112.573 kb on + strandat 112.573 kb on + strandat 112.573 kb on + strandat 112.573 kb on + strandat 112.573 kb on + strandat 112.573 kb on + strandat 112.573 kb on + strandat 112.573 kb on + strandat 112.574 kb on - strandat 112.574 kb on - strandat 112.574 kb on - strandat 112.574 kb on - strandat 112.574 kb on - strandat 112.574 kb on - strandat 112.574 kb on - strandat 112.574 kb on - strandat 112.647 kb on + strandat 112.647 kb on + strandat 112.647 kb on + strandat 112.647 kb on + strandat 112.647 kb on + strandat 112.648 kb on - strandat 112.648 kb on - strandat 112.648 kb on - strandat 112.648 kb on - strandat 112.671 kb on + strandat 112.671 kb on + strandat 112.671 kb on + strandat 112.671 kb on + strandat 112.671 kb on + strandat 112.671 kb on + strandat 112.671 kb on + strandat 112.671 kb on + strandat 112.671 kb on + strandat 112.671 kb on + strandat 112.671 kb on + strandat 112.672 kb on - strandat 112.672 kb on - strandat 112.672 kb on - strandat 112.672 kb on - strandat 112.672 kb on - strandat 112.672 kb on - strandat 112.707 kb on + strandat 112.707 kb on + strandat 112.707 kb on + strandat 112.707 kb on + strandat 112.707 kb on + strandat 112.708 kb on - strandat 112.708 kb on - strandat 112.708 kb on - strandat 112.708 kb on - strandat 112.708 kb on - strandat 112.708 kb on - strandat 112.708 kb on - strandat 112.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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111,798 + Ac3H11_1904 0.86 -1.3
111,798 + Ac3H11_1904 0.86 -1.6
111,862 + +0.2
111,862 + +0.1
111,863 - -1.0
111,872 + -0.4
111,872 + -0.2
111,872 + +0.3
111,872 + -0.3
111,872 + -0.2
111,918 + -0.1
112,209 + Ac3H11_1905 0.45 -1.5
112,495 - Ac3H11_1905 0.89 +0.5
112,520 + +1.2
112,550 - +0.2
112,563 - -0.1
112,573 + -0.2
112,573 + -0.2
112,573 + +0.0
112,573 + +0.1
112,573 + -0.6
112,573 + -0.1
112,573 + -0.7
112,573 + -0.0
112,573 + -0.2
112,573 + +0.4
112,574 - -0.3
112,574 - +0.1
112,574 - -0.2
112,574 - +0.6
112,574 - -0.0
112,574 - +0.4
112,574 - +1.4
112,574 - -1.4
112,647 + +0.3
112,647 + -0.1
112,647 + +0.0
112,647 + -0.3
112,647 + +0.6
112,648 - -0.5
112,648 - -0.1
112,648 - +0.4
112,648 - +0.8
112,671 + -0.7
112,671 + +0.2
112,671 + +0.5
112,671 + -1.4
112,671 + -0.0
112,671 + -0.1
112,671 + -0.3
112,671 + +1.2
112,671 + -0.4
112,671 + -0.3
112,671 + +0.7
112,672 - -0.0
112,672 - -0.6
112,672 - +0.0
112,672 - +0.7
112,672 - +0.2
112,672 - -0.4
112,707 + +0.9
112,707 + -0.5
112,707 + -0.3
112,707 + -0.9
112,707 + +0.7
112,708 - -1.6
112,708 - -0.7
112,708 - -0.1
112,708 - -0.0
112,708 - -0.5
112,708 - +0.2
112,708 - +0.4
112,708 - +0.6

Or see this region's nucleotide sequence