Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27210 and AO353_27215 are separated by 413 nucleotides AO353_27215 and AO353_27220 are separated by 261 nucleotides AO353_27220 and AO353_27225 are separated by 221 nucleotides AO353_27225 and AO353_27230 are separated by 172 nucleotides
AO353_27210: AO353_27210 - hypothetical protein, at 5,951,601 to 5,952,761
_27210
AO353_27215: AO353_27215 - hypothetical protein, at 5,953,175 to 5,953,390
_27215
AO353_27220: AO353_27220 - hypothetical protein, at 5,953,652 to 5,954,614
_27220
AO353_27225: AO353_27225 - hypothetical protein, at 5,954,836 to 5,955,075
_27225
AO353_27230: AO353_27230 - pyocin, at 5,955,248 to 5,956,453
_27230
Position (kb)
5953
5954
5955 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 5952.674 kb on + strand at 5952.725 kb on + strand at 5952.726 kb on - strand at 5952.755 kb on + strand at 5952.755 kb on + strand at 5952.755 kb on + strand at 5952.755 kb on + strand at 5952.761 kb on + strand at 5952.761 kb on + strand at 5952.761 kb on + strand at 5952.761 kb on + strand at 5952.762 kb on - strand at 5952.762 kb on - strand at 5952.811 kb on + strand at 5952.811 kb on + strand at 5952.812 kb on - strand at 5952.812 kb on - strand at 5952.812 kb on - strand at 5952.812 kb on - strand at 5952.812 kb on - strand at 5952.814 kb on + strand at 5952.814 kb on + strand at 5952.814 kb on + strand at 5952.814 kb on + strand at 5952.814 kb on + strand at 5952.815 kb on - strand at 5952.815 kb on - strand at 5952.815 kb on - strand at 5952.815 kb on - strand at 5952.815 kb on - strand at 5952.815 kb on - strand at 5952.818 kb on + strand at 5952.818 kb on + strand at 5952.818 kb on + strand at 5952.819 kb on - strand at 5952.819 kb on - strand at 5952.819 kb on - strand at 5952.819 kb on - strand at 5952.819 kb on - strand at 5952.825 kb on + strand at 5952.851 kb on + strand at 5952.851 kb on + strand at 5952.851 kb on + strand at 5952.851 kb on + strand at 5952.851 kb on + strand at 5952.851 kb on + strand at 5952.960 kb on - strand at 5953.030 kb on + strand at 5953.089 kb on - strand at 5953.098 kb on + strand at 5953.113 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.140 kb on + strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.141 kb on - strand at 5953.187 kb on + strand at 5953.203 kb on + strand, within AO353_27215 at 5953.204 kb on - strand, within AO353_27215 at 5953.204 kb on - strand, within AO353_27215 at 5953.217 kb on + strand, within AO353_27215 at 5953.217 kb on + strand, within AO353_27215 at 5953.217 kb on + strand, within AO353_27215 at 5953.218 kb on - strand, within AO353_27215 at 5953.491 kb on + strand at 5953.492 kb on - strand at 5953.506 kb on + strand at 5953.561 kb on + strand at 5953.608 kb on - strand at 5953.608 kb on - strand at 5953.630 kb on - strand at 5953.757 kb on - strand, within AO353_27220 at 5953.763 kb on - strand, within AO353_27220 at 5953.815 kb on - strand, within AO353_27220 at 5953.863 kb on + strand, within AO353_27220 at 5953.864 kb on - strand, within AO353_27220 at 5953.977 kb on + strand, within AO353_27220 at 5954.014 kb on + strand, within AO353_27220 at 5954.164 kb on + strand, within AO353_27220 at 5954.320 kb on - strand, within AO353_27220 at 5954.320 kb on - strand, within AO353_27220 at 5954.617 kb on - strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.825 kb on + strand at 5954.826 kb on - strand at 5954.826 kb on - strand at 5954.859 kb on + strand at 5955.179 kb on + strand at 5955.179 kb on + strand at 5955.179 kb on + strand at 5955.179 kb on + strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.180 kb on - strand at 5955.212 kb on - strand at 5955.257 kb on + strand at 5955.258 kb on - strand at 5955.289 kb on + strand at 5955.289 kb on + strand at 5955.289 kb on + strand at 5955.290 kb on - strand at 5955.292 kb on + strand at 5955.292 kb on + strand at 5955.293 kb on - strand at 5955.306 kb on - strand at 5955.307 kb on - strand at 5955.307 kb on - strand at 5955.319 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.344 kb on + strand at 5955.345 kb on - strand at 5955.562 kb on + strand, within AO353_27230
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,952,674 + -2.2 5,952,725 + +0.6 5,952,726 - -0.2 5,952,755 + -0.2 5,952,755 + -0.4 5,952,755 + -1.5 5,952,755 + +0.2 5,952,761 + +0.0 5,952,761 + +0.5 5,952,761 + +0.4 5,952,761 + -0.4 5,952,762 - -2.0 5,952,762 - +1.9 5,952,811 + +1.9 5,952,811 + -1.0 5,952,812 - +1.4 5,952,812 - -1.7 5,952,812 - -0.1 5,952,812 - -1.0 5,952,812 - -0.1 5,952,814 + +0.1 5,952,814 + -0.4 5,952,814 + +1.7 5,952,814 + -1.4 5,952,814 + +0.7 5,952,815 - -1.2 5,952,815 - -0.2 5,952,815 - -0.4 5,952,815 - +0.4 5,952,815 - +0.0 5,952,815 - +1.4 5,952,818 + -0.6 5,952,818 + +0.4 5,952,818 + +2.7 5,952,819 - -0.2 5,952,819 - -0.9 5,952,819 - -2.6 5,952,819 - +0.1 5,952,819 - +0.4 5,952,825 + +1.2 5,952,851 + -0.2 5,952,851 + -1.0 5,952,851 + +0.7 5,952,851 + -0.2 5,952,851 + -1.2 5,952,851 + -1.0 5,952,960 - +1.4 5,953,030 + -1.6 5,953,089 - +0.7 5,953,098 + -0.1 5,953,113 + +0.1 5,953,140 + +1.1 5,953,140 + -2.8 5,953,140 + -0.1 5,953,140 + -0.3 5,953,140 + -0.6 5,953,140 + -0.3 5,953,140 + +0.9 5,953,140 + +0.2 5,953,140 + -0.1 5,953,140 + -1.4 5,953,140 + +2.4 5,953,140 + +1.4 5,953,141 - +0.5 5,953,141 - -0.1 5,953,141 - -0.2 5,953,141 - +0.9 5,953,141 - +0.7 5,953,141 - +0.4 5,953,141 - -1.8 5,953,141 - -0.2 5,953,141 - -1.0 5,953,141 - -2.6 5,953,141 - +0.9 5,953,141 - +2.7 5,953,141 - -0.9 5,953,141 - +0.4 5,953,187 + -0.4 5,953,203 + AO353_27215 0.13 -0.8 5,953,204 - AO353_27215 0.13 +0.4 5,953,204 - AO353_27215 0.13 -0.5 5,953,217 + AO353_27215 0.19 -0.5 5,953,217 + AO353_27215 0.19 -2.0 5,953,217 + AO353_27215 0.19 +0.4 5,953,218 - AO353_27215 0.20 +0.9 5,953,491 + +0.4 5,953,492 - +2.4 5,953,506 + -2.0 5,953,561 + +0.1 5,953,608 - -0.6 5,953,608 - -0.3 5,953,630 - +0.3 5,953,757 - AO353_27220 0.11 +1.7 5,953,763 - AO353_27220 0.12 -2.2 5,953,815 - AO353_27220 0.17 +0.8 5,953,863 + AO353_27220 0.22 +1.2 5,953,864 - AO353_27220 0.22 +0.3 5,953,977 + AO353_27220 0.34 +0.4 5,954,014 + AO353_27220 0.38 +0.6 5,954,164 + AO353_27220 0.53 -0.2 5,954,320 - AO353_27220 0.69 +1.3 5,954,320 - AO353_27220 0.69 +0.8 5,954,617 - +0.9 5,954,825 + -0.1 5,954,825 + -1.2 5,954,825 + +0.9 5,954,825 + +0.2 5,954,825 + -0.7 5,954,826 - -1.2 5,954,826 - -0.4 5,954,859 + -1.5 5,955,179 + -0.4 5,955,179 + +1.4 5,955,179 + +0.1 5,955,179 + -0.6 5,955,180 - +0.1 5,955,180 - +0.5 5,955,180 - -0.2 5,955,180 - -0.2 5,955,180 - +0.4 5,955,180 - -1.0 5,955,180 - -1.2 5,955,212 - +0.2 5,955,257 + -0.2 5,955,258 - +1.2 5,955,289 + +0.1 5,955,289 + -0.4 5,955,289 + +0.9 5,955,290 - +0.0 5,955,292 + +0.1 5,955,292 + +0.9 5,955,293 - +0.4 5,955,306 - -0.4 5,955,307 - -0.1 5,955,307 - -1.6 5,955,319 + -0.0 5,955,344 + +1.2 5,955,344 + +0.2 5,955,344 + +1.1 5,955,344 + +2.7 5,955,344 + +3.9 5,955,344 + +0.4 5,955,345 - +2.5 5,955,562 + AO353_27230 0.26 -0.3
Or see this region's nucleotide sequence