Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26245

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26235 and AO353_26240 are separated by 12 nucleotidesAO353_26240 and AO353_26245 are separated by 81 nucleotidesAO353_26245 and AO353_26250 overlap by 26 nucleotides AO353_26235: AO353_26235 - hypothetical protein, at 5,767,942 to 5,768,907 _26235 AO353_26240: AO353_26240 - hypothetical protein, at 5,768,920 to 5,769,648 _26240 AO353_26245: AO353_26245 - phage head morphogenesis protein, at 5,769,730 to 5,770,815 _26245 AO353_26250: AO353_26250 - hypothetical protein, at 5,770,790 to 5,772,205 _26250 Position (kb) 5769 5770 5771Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5768.742 kb on - strand, within AO353_26235at 5768.755 kb on - strand, within AO353_26235at 5768.755 kb on - strand, within AO353_26235at 5768.845 kb on + strandat 5768.845 kb on + strandat 5768.845 kb on + strandat 5768.845 kb on + strandat 5768.845 kb on + strandat 5768.846 kb on - strandat 5768.846 kb on - strandat 5768.846 kb on - strandat 5768.846 kb on - strandat 5768.846 kb on - strandat 5768.873 kb on + strandat 5768.873 kb on + strandat 5768.873 kb on + strandat 5768.873 kb on + strandat 5768.873 kb on + strandat 5768.874 kb on - strandat 5768.874 kb on - strandat 5768.874 kb on - strandat 5768.893 kb on + strandat 5768.894 kb on - strandat 5768.901 kb on + strandat 5768.901 kb on + strandat 5768.902 kb on - strandat 5768.902 kb on - strandat 5768.902 kb on - strandat 5768.921 kb on + strandat 5768.939 kb on + strandat 5768.940 kb on - strandat 5769.280 kb on + strand, within AO353_26240at 5769.280 kb on + strand, within AO353_26240at 5769.519 kb on + strand, within AO353_26240at 5769.538 kb on + strand, within AO353_26240at 5769.539 kb on - strand, within AO353_26240at 5769.856 kb on + strand, within AO353_26245at 5769.924 kb on - strand, within AO353_26245at 5769.924 kb on - strand, within AO353_26245at 5769.926 kb on + strand, within AO353_26245at 5769.927 kb on - strand, within AO353_26245at 5769.927 kb on - strand, within AO353_26245at 5769.927 kb on - strand, within AO353_26245at 5769.997 kb on + strandat 5769.997 kb on + strand, within AO353_26245at 5769.998 kb on - strand, within AO353_26245at 5769.998 kb on - strand, within AO353_26245at 5769.998 kb on - strand, within AO353_26245at 5770.550 kb on + strandat 5770.550 kb on + strand, within AO353_26245at 5770.550 kb on + strand, within AO353_26245at 5770.550 kb on + strand, within AO353_26245at 5770.550 kb on + strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.606 kb on - strand, within AO353_26245at 5770.661 kb on + strand, within AO353_26245at 5770.923 kb on + strandat 5770.924 kb on - strandat 5770.924 kb on - strandat 5771.058 kb on + strand, within AO353_26250at 5771.058 kb on + strand, within AO353_26250at 5771.058 kb on + strand, within AO353_26250at 5771.059 kb on - strand, within AO353_26250at 5771.059 kb on - strand, within AO353_26250at 5771.059 kb on - strand, within AO353_26250at 5771.088 kb on + strand, within AO353_26250at 5771.088 kb on + strand, within AO353_26250at 5771.088 kb on + strand, within AO353_26250at 5771.089 kb on - strand, within AO353_26250at 5771.089 kb on - strand, within AO353_26250at 5771.108 kb on + strand, within AO353_26250at 5771.108 kb on + strand, within AO353_26250at 5771.108 kb on + strand, within AO353_26250at 5771.109 kb on - strandat 5771.170 kb on + strand, within AO353_26250at 5771.170 kb on + strand, within AO353_26250at 5771.170 kb on + strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.194 kb on + strand, within AO353_26250at 5771.195 kb on - strand, within AO353_26250at 5771.245 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.326 kb on - strand, within AO353_26250at 5771.326 kb on - strand, within AO353_26250at 5771.326 kb on - strand, within AO353_26250at 5771.418 kb on + strand, within AO353_26250at 5771.418 kb on + strand, within AO353_26250at 5771.419 kb on - strand, within AO353_26250at 5771.467 kb on - strand, within AO353_26250at 5771.545 kb on + strand, within AO353_26250at 5771.574 kb on - strand, within AO353_26250at 5771.784 kb on + strand, within AO353_26250at 5771.785 kb on - strand, within AO353_26250

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,768,742 - AO353_26235 0.83 +0.4
5,768,755 - AO353_26235 0.84 +0.3
5,768,755 - AO353_26235 0.84 -0.4
5,768,845 + +0.3
5,768,845 + +0.9
5,768,845 + +0.6
5,768,845 + +0.4
5,768,845 + +0.4
5,768,846 - +0.4
5,768,846 - -0.2
5,768,846 - +1.0
5,768,846 - +0.3
5,768,846 - -0.3
5,768,873 + +0.9
5,768,873 + -2.5
5,768,873 + -0.3
5,768,873 + +0.8
5,768,873 + +1.3
5,768,874 - -0.2
5,768,874 - +0.6
5,768,874 - +0.3
5,768,893 + +0.0
5,768,894 - +1.3
5,768,901 + -0.1
5,768,901 + +0.7
5,768,902 - -0.4
5,768,902 - +2.3
5,768,902 - -0.9
5,768,921 + -0.1
5,768,939 + -1.3
5,768,940 - -0.1
5,769,280 + AO353_26240 0.49 +0.1
5,769,280 + AO353_26240 0.49 +0.3
5,769,519 + AO353_26240 0.82 +0.3
5,769,538 + AO353_26240 0.85 +1.0
5,769,539 - AO353_26240 0.85 -0.4
5,769,856 + AO353_26245 0.12 -0.8
5,769,924 - AO353_26245 0.18 -0.2
5,769,924 - AO353_26245 0.18 -1.3
5,769,926 + AO353_26245 0.18 -2.5
5,769,927 - AO353_26245 0.18 +0.2
5,769,927 - AO353_26245 0.18 -0.7
5,769,927 - AO353_26245 0.18 -1.3
5,769,997 + +0.9
5,769,997 + AO353_26245 0.25 +1.9
5,769,998 - AO353_26245 0.25 -3.2
5,769,998 - AO353_26245 0.25 +0.1
5,769,998 - AO353_26245 0.25 +0.1
5,770,550 + -1.3
5,770,550 + AO353_26245 0.76 -0.1
5,770,550 + AO353_26245 0.76 +1.9
5,770,550 + AO353_26245 0.76 -0.4
5,770,550 + AO353_26245 0.76 -2.0
5,770,551 - AO353_26245 0.76 -1.0
5,770,551 - AO353_26245 0.76 +0.7
5,770,551 - AO353_26245 0.76 +0.3
5,770,551 - AO353_26245 0.76 -0.6
5,770,551 - AO353_26245 0.76 -1.6
5,770,551 - AO353_26245 0.76 -1.4
5,770,606 - AO353_26245 0.81 +1.3
5,770,661 + AO353_26245 0.86 -0.4
5,770,923 + -0.4
5,770,924 - -1.4
5,770,924 - +0.1
5,771,058 + AO353_26250 0.19 -0.4
5,771,058 + AO353_26250 0.19 +0.6
5,771,058 + AO353_26250 0.19 -0.3
5,771,059 - AO353_26250 0.19 -0.6
5,771,059 - AO353_26250 0.19 +2.3
5,771,059 - AO353_26250 0.19 +0.1
5,771,088 + AO353_26250 0.21 -0.6
5,771,088 + AO353_26250 0.21 +0.5
5,771,088 + AO353_26250 0.21 +0.3
5,771,089 - AO353_26250 0.21 -0.5
5,771,089 - AO353_26250 0.21 +0.3
5,771,108 + AO353_26250 0.22 -1.3
5,771,108 + AO353_26250 0.22 +0.1
5,771,108 + AO353_26250 0.22 -0.9
5,771,109 - -1.3
5,771,170 + AO353_26250 0.27 -1.0
5,771,170 + AO353_26250 0.27 -0.0
5,771,170 + AO353_26250 0.27 +0.3
5,771,171 - AO353_26250 0.27 +0.3
5,771,171 - AO353_26250 0.27 +0.3
5,771,171 - AO353_26250 0.27 -0.5
5,771,171 - AO353_26250 0.27 -0.3
5,771,171 - AO353_26250 0.27 +1.0
5,771,171 - AO353_26250 0.27 -0.4
5,771,171 - AO353_26250 0.27 -1.4
5,771,194 + AO353_26250 0.29 +0.6
5,771,195 - AO353_26250 0.29 +0.2
5,771,245 + AO353_26250 0.32 -0.0
5,771,325 + AO353_26250 0.38 +0.9
5,771,325 + AO353_26250 0.38 -0.3
5,771,325 + AO353_26250 0.38 -1.7
5,771,325 + AO353_26250 0.38 -1.3
5,771,325 + AO353_26250 0.38 -0.9
5,771,325 + AO353_26250 0.38 -1.5
5,771,325 + AO353_26250 0.38 +0.6
5,771,326 - AO353_26250 0.38 -0.4
5,771,326 - AO353_26250 0.38 +0.1
5,771,326 - AO353_26250 0.38 -0.3
5,771,418 + AO353_26250 0.44 +1.9
5,771,418 + AO353_26250 0.44 +0.5
5,771,419 - AO353_26250 0.44 -0.7
5,771,467 - AO353_26250 0.48 +1.0
5,771,545 + AO353_26250 0.53 -0.4
5,771,574 - AO353_26250 0.55 +0.0
5,771,784 + AO353_26250 0.70 +0.7
5,771,785 - AO353_26250 0.70 +0.2

Or see this region's nucleotide sequence