Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26045 and AO353_26050 are separated by 180 nucleotides AO353_26050 and AO353_26055 are separated by 159 nucleotides AO353_26055 and AO353_26060 are separated by 108 nucleotides
AO353_26045: AO353_26045 - hypothetical protein, at 5,735,836 to 5,736,165
_26045
AO353_26050: AO353_26050 - hypothetical protein, at 5,736,346 to 5,736,705
_26050
AO353_26055: AO353_26055 - hypothetical protein, at 5,736,865 to 5,737,071
_26055
AO353_26060: AO353_26060 - integrase, at 5,737,180 to 5,738,013
_26060
Position (kb)
5736
5737 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5735.367 kb on + strand at 5735.367 kb on + strand at 5735.368 kb on - strand at 5735.368 kb on - strand at 5735.429 kb on + strand at 5735.429 kb on + strand at 5735.430 kb on - strand at 5735.571 kb on + strand at 5735.571 kb on + strand at 5735.571 kb on + strand at 5735.572 kb on - strand at 5735.572 kb on - strand at 5735.572 kb on - strand at 5735.639 kb on - strand at 5735.642 kb on + strand at 5735.642 kb on + strand at 5735.643 kb on - strand at 5735.643 kb on - strand at 5735.643 kb on - strand at 5735.652 kb on - strand at 5735.684 kb on - strand at 5735.684 kb on - strand at 5735.684 kb on - strand at 5735.684 kb on - strand at 5735.684 kb on - strand at 5735.719 kb on - strand at 5735.733 kb on + strand at 5735.733 kb on + strand at 5735.734 kb on - strand at 5735.759 kb on + strand at 5735.759 kb on + strand at 5735.760 kb on - strand at 5735.760 kb on - strand at 5735.760 kb on - strand at 5735.760 kb on - strand at 5735.760 kb on - strand at 5735.823 kb on + strand at 5735.894 kb on + strand, within AO353_26045 at 5735.918 kb on + strand, within AO353_26045 at 5735.918 kb on + strand at 5736.059 kb on + strand, within AO353_26045 at 5736.060 kb on - strand, within AO353_26045 at 5736.060 kb on - strand, within AO353_26045 at 5736.060 kb on - strand, within AO353_26045 at 5736.139 kb on + strand at 5736.144 kb on - strand at 5736.237 kb on + strand at 5736.348 kb on - strand at 5736.348 kb on - strand at 5736.415 kb on - strand, within AO353_26050 at 5736.441 kb on - strand, within AO353_26050 at 5736.443 kb on - strand, within AO353_26050 at 5736.514 kb on + strand, within AO353_26050 at 5736.594 kb on + strand, within AO353_26050 at 5736.622 kb on - strand at 5736.674 kb on - strand at 5736.771 kb on + strand at 5736.771 kb on + strand at 5736.771 kb on + strand at 5736.771 kb on + strand at 5736.772 kb on - strand at 5736.772 kb on - strand at 5736.772 kb on - strand at 5736.818 kb on + strand at 5736.819 kb on - strand at 5736.823 kb on + strand at 5736.866 kb on + strand at 5736.886 kb on + strand, within AO353_26055 at 5736.907 kb on - strand, within AO353_26055 at 5736.913 kb on + strand, within AO353_26055 at 5736.925 kb on - strand, within AO353_26055 at 5736.940 kb on + strand, within AO353_26055 at 5737.082 kb on + strand at 5737.108 kb on - strand at 5737.127 kb on + strand at 5737.127 kb on + strand at 5737.127 kb on + strand at 5737.127 kb on + strand at 5737.128 kb on - strand at 5737.128 kb on - strand at 5737.128 kb on - strand at 5737.128 kb on - strand at 5737.233 kb on - strand at 5737.233 kb on - strand at 5737.237 kb on + strand at 5737.237 kb on + strand at 5737.238 kb on - strand at 5737.238 kb on - strand at 5737.259 kb on - strand at 5737.259 kb on - strand at 5737.270 kb on + strand, within AO353_26060 at 5737.271 kb on - strand, within AO353_26060 at 5737.293 kb on + strand, within AO353_26060 at 5737.334 kb on + strand, within AO353_26060 at 5737.334 kb on + strand, within AO353_26060 at 5737.335 kb on - strand, within AO353_26060 at 5737.355 kb on + strand, within AO353_26060 at 5737.355 kb on + strand, within AO353_26060 at 5737.355 kb on + strand, within AO353_26060 at 5737.355 kb on + strand, within AO353_26060 at 5737.356 kb on - strand, within AO353_26060 at 5737.383 kb on + strand, within AO353_26060 at 5737.383 kb on + strand, within AO353_26060 at 5737.384 kb on - strand, within AO353_26060 at 5737.506 kb on - strand, within AO353_26060 at 5737.517 kb on + strand, within AO353_26060 at 5737.517 kb on + strand, within AO353_26060 at 5737.517 kb on + strand, within AO353_26060 at 5737.517 kb on + strand, within AO353_26060 at 5737.518 kb on - strand, within AO353_26060 at 5737.518 kb on - strand, within AO353_26060 at 5737.518 kb on - strand, within AO353_26060 at 5737.518 kb on - strand, within AO353_26060 at 5737.518 kb on - strand, within AO353_26060 at 5737.518 kb on - strand, within AO353_26060 at 5737.519 kb on + strand, within AO353_26060 at 5737.549 kb on + strand, within AO353_26060 at 5737.549 kb on + strand, within AO353_26060 at 5737.549 kb on + strand, within AO353_26060 at 5737.549 kb on + strand, within AO353_26060 at 5737.550 kb on - strand, within AO353_26060 at 5737.550 kb on - strand, within AO353_26060 at 5737.550 kb on - strand, within AO353_26060 at 5737.610 kb on + strand, within AO353_26060 at 5737.689 kb on + strand, within AO353_26060 at 5737.690 kb on - strand, within AO353_26060
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,735,367 + -1.0 5,735,367 + -0.7 5,735,368 - -1.7 5,735,368 - +0.4 5,735,429 + -0.7 5,735,429 + +0.3 5,735,430 - -0.5 5,735,571 + -1.1 5,735,571 + +0.9 5,735,571 + +1.0 5,735,572 - +1.5 5,735,572 - -1.0 5,735,572 - -0.0 5,735,639 - +0.3 5,735,642 + -0.3 5,735,642 + +1.1 5,735,643 - -1.7 5,735,643 - +1.0 5,735,643 - -0.2 5,735,652 - -0.9 5,735,684 - +2.6 5,735,684 - -0.0 5,735,684 - +0.3 5,735,684 - +0.8 5,735,684 - -0.1 5,735,719 - +0.7 5,735,733 + +0.6 5,735,733 + +3.1 5,735,734 - -1.3 5,735,759 + +0.7 5,735,759 + +0.1 5,735,760 - -0.1 5,735,760 - +0.3 5,735,760 - -0.1 5,735,760 - -0.0 5,735,760 - +1.5 5,735,823 + -2.0 5,735,894 + AO353_26045 0.18 -0.4 5,735,918 + AO353_26045 0.25 +0.8 5,735,918 + +2.1 5,736,059 + AO353_26045 0.68 -1.3 5,736,060 - AO353_26045 0.68 +1.2 5,736,060 - AO353_26045 0.68 -0.7 5,736,060 - AO353_26045 0.68 +1.0 5,736,139 + -0.5 5,736,144 - +0.3 5,736,237 + -0.5 5,736,348 - -1.3 5,736,348 - +0.0 5,736,415 - AO353_26050 0.19 +1.9 5,736,441 - AO353_26050 0.26 +0.6 5,736,443 - AO353_26050 0.27 -0.7 5,736,514 + AO353_26050 0.47 +2.3 5,736,594 + AO353_26050 0.69 +0.7 5,736,622 - -0.3 5,736,674 - -2.5 5,736,771 + +0.7 5,736,771 + +0.4 5,736,771 + -1.3 5,736,771 + -1.4 5,736,772 - -0.4 5,736,772 - +0.5 5,736,772 - -1.1 5,736,818 + +1.7 5,736,819 - -2.3 5,736,823 + -0.7 5,736,866 + +1.7 5,736,886 + AO353_26055 0.10 +1.3 5,736,907 - AO353_26055 0.20 +0.1 5,736,913 + AO353_26055 0.23 +1.3 5,736,925 - AO353_26055 0.29 +0.3 5,736,940 + AO353_26055 0.36 +0.7 5,737,082 + +1.5 5,737,108 - -0.1 5,737,127 + -0.7 5,737,127 + +0.6 5,737,127 + -0.7 5,737,127 + -2.5 5,737,128 - +0.3 5,737,128 - +0.4 5,737,128 - +0.9 5,737,128 - -0.2 5,737,233 - +1.1 5,737,233 - -0.5 5,737,237 + -2.7 5,737,237 + -0.2 5,737,238 - -0.7 5,737,238 - -1.6 5,737,259 - +0.3 5,737,259 - -1.9 5,737,270 + AO353_26060 0.11 -0.6 5,737,271 - AO353_26060 0.11 -0.4 5,737,293 + AO353_26060 0.14 -1.7 5,737,334 + AO353_26060 0.18 +0.0 5,737,334 + AO353_26060 0.18 +1.2 5,737,335 - AO353_26060 0.19 +1.0 5,737,355 + AO353_26060 0.21 +0.6 5,737,355 + AO353_26060 0.21 +0.3 5,737,355 + AO353_26060 0.21 -0.0 5,737,355 + AO353_26060 0.21 +1.4 5,737,356 - AO353_26060 0.21 -0.3 5,737,383 + AO353_26060 0.24 -0.1 5,737,383 + AO353_26060 0.24 -0.7 5,737,384 - AO353_26060 0.24 +0.5 5,737,506 - AO353_26060 0.39 +0.6 5,737,517 + AO353_26060 0.40 -0.3 5,737,517 + AO353_26060 0.40 -0.1 5,737,517 + AO353_26060 0.40 -0.7 5,737,517 + AO353_26060 0.40 -0.1 5,737,518 - AO353_26060 0.41 -0.4 5,737,518 - AO353_26060 0.41 -0.7 5,737,518 - AO353_26060 0.41 -0.6 5,737,518 - AO353_26060 0.41 -0.2 5,737,518 - AO353_26060 0.41 +1.5 5,737,518 - AO353_26060 0.41 +0.3 5,737,519 + AO353_26060 0.41 +2.3 5,737,549 + AO353_26060 0.44 +0.3 5,737,549 + AO353_26060 0.44 +1.1 5,737,549 + AO353_26060 0.44 -0.4 5,737,549 + AO353_26060 0.44 +0.3 5,737,550 - AO353_26060 0.44 -0.3 5,737,550 - AO353_26060 0.44 -1.7 5,737,550 - AO353_26060 0.44 -0.6 5,737,610 + AO353_26060 0.52 -1.3 5,737,689 + AO353_26060 0.61 -0.3 5,737,690 - AO353_26060 0.61 +0.9
Or see this region's nucleotide sequence