Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18640

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_18635 and AO353_18640 are separated by 72 nucleotidesAO353_18640 and AO353_18645 are separated by 81 nucleotides AO353_18635: AO353_18635 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 4,101,371 to 4,102,816 _18635 AO353_18640: AO353_18640 - flagellar biosynthesis protein FlaG, at 4,102,889 to 4,103,239 _18640 AO353_18645: AO353_18645 - flagellar cap protein FliD, at 4,103,321 to 4,104,721 _18645 Position (kb) 4102 4103 4104Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4102.077 kb on + strand, within AO353_18635at 4102.077 kb on + strand, within AO353_18635at 4102.077 kb on + strand, within AO353_18635at 4102.077 kb on + strand, within AO353_18635at 4102.077 kb on + strand, within AO353_18635at 4102.081 kb on + strand, within AO353_18635at 4102.081 kb on + strand, within AO353_18635at 4102.082 kb on - strand, within AO353_18635at 4102.082 kb on - strand, within AO353_18635at 4102.135 kb on - strand, within AO353_18635at 4102.324 kb on + strand, within AO353_18635at 4102.324 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.358 kb on + strand, within AO353_18635at 4102.359 kb on - strand, within AO353_18635at 4102.359 kb on - strand, within AO353_18635at 4102.359 kb on - strand, within AO353_18635at 4102.359 kb on - strand, within AO353_18635at 4102.359 kb on - strand, within AO353_18635at 4102.359 kb on - strand, within AO353_18635at 4102.359 kb on - strand, within AO353_18635at 4102.359 kb on - strand, within AO353_18635at 4102.359 kb on - strand, within AO353_18635at 4102.359 kb on - strand, within AO353_18635at 4102.436 kb on + strand, within AO353_18635at 4102.436 kb on + strand, within AO353_18635at 4102.436 kb on + strand, within AO353_18635at 4102.436 kb on + strand, within AO353_18635at 4102.437 kb on - strand, within AO353_18635at 4102.437 kb on - strand, within AO353_18635at 4102.437 kb on - strand, within AO353_18635at 4102.437 kb on - strand, within AO353_18635at 4102.437 kb on - strand, within AO353_18635at 4102.798 kb on - strandat 4102.814 kb on + strandat 4102.814 kb on + strandat 4102.815 kb on - strandat 4102.815 kb on - strandat 4102.815 kb on - strandat 4102.815 kb on - strandat 4102.818 kb on - strandat 4102.830 kb on + strandat 4102.830 kb on + strandat 4102.830 kb on + strandat 4102.831 kb on - strandat 4102.831 kb on - strandat 4102.831 kb on - strandat 4102.850 kb on + strandat 4102.850 kb on + strandat 4102.850 kb on + strandat 4102.850 kb on + strandat 4102.851 kb on - strandat 4102.851 kb on - strandat 4103.014 kb on + strand, within AO353_18640at 4103.014 kb on + strand, within AO353_18640at 4103.015 kb on - strand, within AO353_18640at 4103.069 kb on - strand, within AO353_18640at 4103.104 kb on + strand, within AO353_18640at 4103.104 kb on + strand, within AO353_18640at 4103.104 kb on + strand, within AO353_18640at 4103.104 kb on + strand, within AO353_18640at 4103.104 kb on + strand, within AO353_18640at 4103.105 kb on - strand, within AO353_18640at 4103.181 kb on + strand, within AO353_18640at 4103.181 kb on + strand, within AO353_18640at 4103.182 kb on - strand, within AO353_18640at 4103.182 kb on - strand, within AO353_18640at 4103.182 kb on - strand, within AO353_18640at 4103.199 kb on + strand, within AO353_18640at 4103.199 kb on + strand, within AO353_18640at 4103.200 kb on - strand, within AO353_18640at 4103.200 kb on - strand, within AO353_18640at 4103.200 kb on - strand, within AO353_18640at 4103.200 kb on - strand, within AO353_18640at 4103.329 kb on + strandat 4103.330 kb on - strandat 4103.345 kb on - strandat 4103.649 kb on + strand, within AO353_18645at 4103.649 kb on + strand, within AO353_18645at 4103.649 kb on + strand, within AO353_18645at 4103.649 kb on + strand, within AO353_18645at 4103.650 kb on - strand, within AO353_18645at 4103.653 kb on + strand, within AO353_18645at 4103.653 kb on + strand, within AO353_18645at 4103.653 kb on + strand, within AO353_18645at 4103.653 kb on + strandat 4103.653 kb on + strand, within AO353_18645at 4103.653 kb on + strand, within AO353_18645at 4103.653 kb on + strand, within AO353_18645at 4103.653 kb on + strand, within AO353_18645at 4103.653 kb on + strand, within AO353_18645at 4103.654 kb on - strandat 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.654 kb on - strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.741 kb on + strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.742 kb on - strand, within AO353_18645at 4103.760 kb on + strand, within AO353_18645at 4103.760 kb on + strand, within AO353_18645at 4103.760 kb on + strand, within AO353_18645at 4103.760 kb on + strand, within AO353_18645at 4103.760 kb on + strand, within AO353_18645at 4103.761 kb on - strand, within AO353_18645at 4103.761 kb on - strand, within AO353_18645at 4103.804 kb on + strand, within AO353_18645at 4103.805 kb on - strand, within AO353_18645at 4103.911 kb on + strand, within AO353_18645at 4103.912 kb on - strand, within AO353_18645at 4103.933 kb on - strand, within AO353_18645at 4103.966 kb on + strand, within AO353_18645at 4103.966 kb on + strand, within AO353_18645at 4103.966 kb on + strand, within AO353_18645at 4103.966 kb on + strand, within AO353_18645at 4103.966 kb on + strand, within AO353_18645at 4103.966 kb on + strand, within AO353_18645at 4103.966 kb on + strand, within AO353_18645at 4103.966 kb on + strand, within AO353_18645at 4103.966 kb on + strand, within AO353_18645at 4103.966 kb on + strand, within AO353_18645at 4103.967 kb on - strand, within AO353_18645at 4103.967 kb on - strand, within AO353_18645at 4103.967 kb on - strand, within AO353_18645at 4103.967 kb on - strand, within AO353_18645at 4103.967 kb on - strand, within AO353_18645at 4103.967 kb on - strand, within AO353_18645at 4104.094 kb on + strand, within AO353_18645at 4104.094 kb on + strand, within AO353_18645at 4104.094 kb on + strand, within AO353_18645at 4104.094 kb on + strand, within AO353_18645at 4104.094 kb on + strand, within AO353_18645at 4104.095 kb on - strand, within AO353_18645at 4104.095 kb on - strand, within AO353_18645at 4104.167 kb on + strand, within AO353_18645at 4104.167 kb on + strand, within AO353_18645at 4104.167 kb on + strand, within AO353_18645at 4104.167 kb on + strand, within AO353_18645at 4104.167 kb on + strand, within AO353_18645at 4104.167 kb on + strand, within AO353_18645at 4104.167 kb on + strand, within AO353_18645at 4104.167 kb on + strand, within AO353_18645at 4104.167 kb on + strand, within AO353_18645at 4104.167 kb on + strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645at 4104.168 kb on - strand, within AO353_18645

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
4,102,077 + AO353_18635 0.49 -1.4
4,102,077 + AO353_18635 0.49 -1.0
4,102,077 + AO353_18635 0.49 +0.0
4,102,077 + AO353_18635 0.49 -0.8
4,102,077 + AO353_18635 0.49 +2.9
4,102,081 + AO353_18635 0.49 +0.6
4,102,081 + AO353_18635 0.49 -0.1
4,102,082 - AO353_18635 0.49 -0.4
4,102,082 - AO353_18635 0.49 +1.1
4,102,135 - AO353_18635 0.53 +0.9
4,102,324 + AO353_18635 0.66 -0.8
4,102,324 + AO353_18635 0.66 -1.4
4,102,358 + AO353_18635 0.68 +0.6
4,102,358 + AO353_18635 0.68 +0.2
4,102,358 + AO353_18635 0.68 +0.0
4,102,358 + AO353_18635 0.68 -0.2
4,102,358 + AO353_18635 0.68 -1.0
4,102,358 + AO353_18635 0.68 +0.2
4,102,358 + AO353_18635 0.68 +0.0
4,102,358 + AO353_18635 0.68 +0.9
4,102,358 + AO353_18635 0.68 -1.1
4,102,358 + AO353_18635 0.68 -1.7
4,102,358 + AO353_18635 0.68 +1.0
4,102,359 - AO353_18635 0.68 -0.4
4,102,359 - AO353_18635 0.68 -0.1
4,102,359 - AO353_18635 0.68 +0.1
4,102,359 - AO353_18635 0.68 -1.5
4,102,359 - AO353_18635 0.68 -1.2
4,102,359 - AO353_18635 0.68 +1.4
4,102,359 - AO353_18635 0.68 +0.2
4,102,359 - AO353_18635 0.68 -0.1
4,102,359 - AO353_18635 0.68 -0.7
4,102,359 - AO353_18635 0.68 +1.0
4,102,436 + AO353_18635 0.74 -1.0
4,102,436 + AO353_18635 0.74 -1.0
4,102,436 + AO353_18635 0.74 +0.4
4,102,436 + AO353_18635 0.74 -0.9
4,102,437 - AO353_18635 0.74 -0.1
4,102,437 - AO353_18635 0.74 +0.3
4,102,437 - AO353_18635 0.74 -0.4
4,102,437 - AO353_18635 0.74 -1.0
4,102,437 - AO353_18635 0.74 -2.0
4,102,798 - +0.6
4,102,814 + -0.2
4,102,814 + +0.6
4,102,815 - +0.6
4,102,815 - +2.5
4,102,815 - +0.3
4,102,815 - +0.7
4,102,818 - -0.7
4,102,830 + -0.1
4,102,830 + +0.6
4,102,830 + +1.1
4,102,831 - +0.9
4,102,831 - -0.5
4,102,831 - -2.0
4,102,850 + +0.3
4,102,850 + +0.8
4,102,850 + -0.7
4,102,850 + -0.4
4,102,851 - +2.2
4,102,851 - -0.4
4,103,014 + AO353_18640 0.36 +0.2
4,103,014 + AO353_18640 0.36 +1.3
4,103,015 - AO353_18640 0.36 -0.1
4,103,069 - AO353_18640 0.51 +1.2
4,103,104 + AO353_18640 0.61 +2.4
4,103,104 + AO353_18640 0.61 -1.0
4,103,104 + AO353_18640 0.61 -0.4
4,103,104 + AO353_18640 0.61 -0.1
4,103,104 + AO353_18640 0.61 +1.0
4,103,105 - AO353_18640 0.62 +0.5
4,103,181 + AO353_18640 0.83 -1.0
4,103,181 + AO353_18640 0.83 -0.3
4,103,182 - AO353_18640 0.83 +1.1
4,103,182 - AO353_18640 0.83 -0.1
4,103,182 - AO353_18640 0.83 +0.3
4,103,199 + AO353_18640 0.88 +0.6
4,103,199 + AO353_18640 0.88 +0.6
4,103,200 - AO353_18640 0.89 +0.0
4,103,200 - AO353_18640 0.89 +1.2
4,103,200 - AO353_18640 0.89 +0.4
4,103,200 - AO353_18640 0.89 +0.0
4,103,329 + +0.4
4,103,330 - -1.2
4,103,345 - -0.5
4,103,649 + AO353_18645 0.23 +0.6
4,103,649 + AO353_18645 0.23 -0.1
4,103,649 + AO353_18645 0.23 +1.0
4,103,649 + AO353_18645 0.23 +2.2
4,103,650 - AO353_18645 0.23 +0.2
4,103,653 + AO353_18645 0.24 +0.3
4,103,653 + AO353_18645 0.24 -1.3
4,103,653 + AO353_18645 0.24 +0.3
4,103,653 + +0.0
4,103,653 + AO353_18645 0.24 -1.2
4,103,653 + AO353_18645 0.24 +0.6
4,103,653 + AO353_18645 0.24 +0.6
4,103,653 + AO353_18645 0.24 +0.8
4,103,653 + AO353_18645 0.24 -0.9
4,103,654 - -1.0
4,103,654 - AO353_18645 0.24 -0.8
4,103,654 - AO353_18645 0.24 +0.6
4,103,654 - AO353_18645 0.24 +0.5
4,103,654 - AO353_18645 0.24 +0.4
4,103,654 - AO353_18645 0.24 -0.4
4,103,654 - AO353_18645 0.24 +0.3
4,103,654 - AO353_18645 0.24 +0.1
4,103,654 - AO353_18645 0.24 -1.2
4,103,654 - AO353_18645 0.24 +0.3
4,103,654 - AO353_18645 0.24 +0.1
4,103,654 - AO353_18645 0.24 +0.9
4,103,654 - AO353_18645 0.24 +0.0
4,103,654 - AO353_18645 0.24 -1.5
4,103,654 - AO353_18645 0.24 +1.0
4,103,654 - AO353_18645 0.24 -2.6
4,103,741 + AO353_18645 0.30 -1.1
4,103,741 + AO353_18645 0.30 +0.5
4,103,741 + AO353_18645 0.30 -1.4
4,103,741 + AO353_18645 0.30 -1.1
4,103,741 + AO353_18645 0.30 -0.3
4,103,741 + AO353_18645 0.30 +2.2
4,103,741 + AO353_18645 0.30 +1.2
4,103,741 + AO353_18645 0.30 +0.0
4,103,741 + AO353_18645 0.30 +0.2
4,103,741 + AO353_18645 0.30 +0.2
4,103,741 + AO353_18645 0.30 +0.1
4,103,741 + AO353_18645 0.30 +0.1
4,103,741 + AO353_18645 0.30 +0.9
4,103,741 + AO353_18645 0.30 +1.1
4,103,742 - AO353_18645 0.30 +0.1
4,103,742 - AO353_18645 0.30 +1.0
4,103,742 - AO353_18645 0.30 -2.6
4,103,742 - AO353_18645 0.30 -1.0
4,103,742 - AO353_18645 0.30 -0.9
4,103,742 - AO353_18645 0.30 +1.0
4,103,742 - AO353_18645 0.30 +0.6
4,103,742 - AO353_18645 0.30 -0.2
4,103,742 - AO353_18645 0.30 +0.6
4,103,742 - AO353_18645 0.30 -0.4
4,103,742 - AO353_18645 0.30 -1.2
4,103,742 - AO353_18645 0.30 -1.0
4,103,742 - AO353_18645 0.30 +1.0
4,103,742 - AO353_18645 0.30 -0.3
4,103,742 - AO353_18645 0.30 -0.8
4,103,742 - AO353_18645 0.30 -1.6
4,103,760 + AO353_18645 0.31 +0.6
4,103,760 + AO353_18645 0.31 +0.6
4,103,760 + AO353_18645 0.31 +0.3
4,103,760 + AO353_18645 0.31 +2.2
4,103,760 + AO353_18645 0.31 -0.3
4,103,761 - AO353_18645 0.31 -0.9
4,103,761 - AO353_18645 0.31 -1.0
4,103,804 + AO353_18645 0.34 +0.0
4,103,805 - AO353_18645 0.35 +0.8
4,103,911 + AO353_18645 0.42 -1.7
4,103,912 - AO353_18645 0.42 +0.0
4,103,933 - AO353_18645 0.44 +0.8
4,103,966 + AO353_18645 0.46 +0.6
4,103,966 + AO353_18645 0.46 -0.9
4,103,966 + AO353_18645 0.46 -0.1
4,103,966 + AO353_18645 0.46 +0.4
4,103,966 + AO353_18645 0.46 -0.5
4,103,966 + AO353_18645 0.46 -0.4
4,103,966 + AO353_18645 0.46 -0.8
4,103,966 + AO353_18645 0.46 +1.4
4,103,966 + AO353_18645 0.46 -0.2
4,103,966 + AO353_18645 0.46 +0.4
4,103,967 - AO353_18645 0.46 +0.1
4,103,967 - AO353_18645 0.46 +1.0
4,103,967 - AO353_18645 0.46 +0.1
4,103,967 - AO353_18645 0.46 -1.2
4,103,967 - AO353_18645 0.46 +2.5
4,103,967 - AO353_18645 0.46 -1.0
4,104,094 + AO353_18645 0.55 +1.3
4,104,094 + AO353_18645 0.55 +2.9
4,104,094 + AO353_18645 0.55 +0.3
4,104,094 + AO353_18645 0.55 +0.6
4,104,094 + AO353_18645 0.55 +0.6
4,104,095 - AO353_18645 0.55 +0.7
4,104,095 - AO353_18645 0.55 +0.8
4,104,167 + AO353_18645 0.60 +0.6
4,104,167 + AO353_18645 0.60 +1.1
4,104,167 + AO353_18645 0.60 +0.2
4,104,167 + AO353_18645 0.60 -0.4
4,104,167 + AO353_18645 0.60 -0.3
4,104,167 + AO353_18645 0.60 -1.0
4,104,167 + AO353_18645 0.60 -0.4
4,104,167 + AO353_18645 0.60 -0.4
4,104,167 + AO353_18645 0.60 -1.0
4,104,167 + AO353_18645 0.60 -1.5
4,104,168 - AO353_18645 0.60 -1.4
4,104,168 - AO353_18645 0.60 +0.8
4,104,168 - AO353_18645 0.60 -0.7
4,104,168 - AO353_18645 0.60 -2.0
4,104,168 - AO353_18645 0.60 +0.1
4,104,168 - AO353_18645 0.60 -0.3
4,104,168 - AO353_18645 0.60 +2.2
4,104,168 - AO353_18645 0.60 +0.6
4,104,168 - AO353_18645 0.60 -0.6
4,104,168 - AO353_18645 0.60 -1.7
4,104,168 - AO353_18645 0.60 +0.3

Or see this region's nucleotide sequence