Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005633

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,930,505	+		ABIE53_005632	0.49	+1.0
1,930,505	+		ABIE53_005632	0.49	+1.9
1,930,506	-		ABIE53_005632	0.49	+0.9
1,930,506	-		ABIE53_005632	0.49	-2.8
1,930,506	-		ABIE53_005632	0.49	+0.3
1,930,506	-		ABIE53_005632	0.49	+0.3
1,930,523	+		ABIE53_005632	0.50	+0.9
1,930,523	+		ABIE53_005632	0.50	-0.9
1,930,523	+		ABIE53_005632	0.50	+0.3
1,930,523	+		ABIE53_005632	0.50	+0.3
1,930,523	+		ABIE53_005632	0.50	-0.1
1,930,523	+		ABIE53_005632	0.50	+0.9
1,930,523	+		ABIE53_005632	0.50	+2.5
1,930,524	-		ABIE53_005632	0.50	-0.4
1,930,524	-		ABIE53_005632	0.50	-0.4
1,930,583	+		ABIE53_005632	0.54	-1.9
1,930,583	+		ABIE53_005632	0.54	+0.1
1,930,583	+		ABIE53_005632	0.54	+0.1
1,930,584	-		ABIE53_005632	0.54	-1.3
1,930,584	-		ABIE53_005632	0.54	-0.1
1,930,584	-		ABIE53_005632	0.54	+0.8
1,930,615	+		ABIE53_005632	0.56	+0.3
1,930,615	+		ABIE53_005632	0.56	+0.0
1,930,615	+		ABIE53_005632	0.56	-0.1
1,930,615	+		ABIE53_005632	0.56	+1.7
1,930,615	+		ABIE53_005632	0.56	-0.9
1,930,615	+		ABIE53_005632	0.56	+0.9
1,930,616	-		ABIE53_005632	0.56	-0.1
1,930,816	+		ABIE53_005632	0.69	-0.9
1,930,817	-		ABIE53_005632	0.69	-0.9
1,930,901	+		ABIE53_005632	0.75	+0.3
1,930,901	+		ABIE53_005632	0.75	-0.5
1,930,934	+		ABIE53_005632	0.77	+0.0
1,930,935	-		ABIE53_005632	0.77	-1.5
1,930,948	+		ABIE53_005632	0.78	+0.6
1,930,948	+		ABIE53_005632	0.78	+0.9
1,930,949	-		ABIE53_005632	0.78	-0.7
1,930,994	+		ABIE53_005632	0.81	+1.5
1,931,101	+		ABIE53_005632	0.88	+0.5
1,931,101	+		ABIE53_005632	0.88	+1.9
1,931,101	+		ABIE53_005632	0.88	-1.2
1,931,101	+		ABIE53_005632	0.88	+0.9
1,931,101	+		ABIE53_005632	0.88	+0.3
1,931,102	-		ABIE53_005632	0.88	+1.0
1,931,102	-		ABIE53_005632	0.88	-1.5
1,931,127	+				+2.7
1,931,127	+				+2.3
1,931,416	+				+2.9
1,931,427	+				+0.9
1,931,427	+				-0.4
1,931,428	-				+0.9
1,931,428	-				+0.9
1,931,428	-				-0.7
1,931,428	-				-0.3
1,931,460	-				-0.1
1,931,500	+		ABIE53_005633	0.12	+0.9
1,931,580	+		ABIE53_005633	0.73	-1.5
1,931,580	+		ABIE53_005633	0.73	+0.9
1,931,581	-		ABIE53_005633	0.73	-0.4
1,931,581	-		ABIE53_005633	0.73	+0.9
1,931,581	-		ABIE53_005633	0.73	-0.5
1,931,581	-		ABIE53_005633	0.73	+1.9
1,931,587	-		ABIE53_005633	0.78	+1.9
1,931,587	-		ABIE53_005633	0.78	+1.3
1,931,601	+		ABIE53_005633	0.89	+1.3
1,931,609	+				-0.1
1,931,609	+				+1.9
1,931,618	+				-0.0
1,931,618	+				-0.7
1,931,618	+				+0.9
1,931,618	+				+1.9
1,931,618	+				-0.4
1,931,618	+				-1.2
1,931,619	-				+0.9
1,931,619	-				-1.5
1,931,662	-				-0.4
1,931,753	+				-0.7
1,931,753	+				-1.4
1,931,753	+				-0.7
1,931,754	-				-0.6
1,931,754	-				+0.3
1,931,756	+				-1.2
1,931,757	-				-0.1
1,931,779	-				-0.1
1,931,875	+				+0.3
1,931,875	+				-0.1
1,931,875	+				+1.9
1,931,876	-				-0.1
1,931,876	-				-0.4
1,931,890	-				-2.2
1,931,895	+				-0.4
1,931,951	-				-1.2
1,931,951	-				-0.7
1,931,972	+		ABIE53_005634	0.11	+1.9
1,931,972	+		ABIE53_005634	0.11	+2.3
1,931,987	+		ABIE53_005634	0.13	+0.3
1,931,988	-		ABIE53_005634	0.13	+1.4
1,931,988	-		ABIE53_005634	0.13	-0.7
1,932,043	-		ABIE53_005634	0.19	+1.9
1,932,043	-		ABIE53_005634	0.19	+1.3
1,932,046	+		ABIE53_005634	0.19	-0.4
1,932,046	+		ABIE53_005634	0.19	-0.1
1,932,046	+		ABIE53_005634	0.19	+0.3
1,932,047	-		ABIE53_005634	0.19	+0.1
1,932,047	-		ABIE53_005634	0.19	+0.3
1,932,047	-		ABIE53_005634	0.19	+1.9
1,932,088	+		ABIE53_005634	0.24	-0.1
1,932,092	+		ABIE53_005634	0.24	+0.6
1,932,092	+		ABIE53_005634	0.24	+2.5
1,932,093	-		ABIE53_005634	0.24	+1.1
1,932,118	-		ABIE53_005634	0.27	-1.2
1,932,118	-		ABIE53_005634	0.27	-1.4
1,932,163	+		ABIE53_005634	0.32	+0.9
1,932,253	+		ABIE53_005634	0.42	-2.5
1,932,253	+		ABIE53_005634	0.42	-0.7
1,932,253	+		ABIE53_005634	0.42	-0.9
1,932,253	+		ABIE53_005634	0.42	+1.9
1,932,254	-		ABIE53_005634	0.42	+1.9
1,932,254	-		ABIE53_005634	0.42	+1.9
1,932,380	+		ABIE53_005634	0.56	-0.9
1,932,380	+		ABIE53_005634	0.56	-2.5
1,932,381	-		ABIE53_005634	0.56	-0.9
1,932,382	+		ABIE53_005634	0.56	+0.3
1,932,382	+		ABIE53_005634	0.56	-0.2
1,932,382	+		ABIE53_005634	0.56	-1.4
1,932,383	-		ABIE53_005634	0.57	-0.7
1,932,383	-		ABIE53_005634	0.57	-0.4
1,932,383	-		ABIE53_005634	0.57	+0.2
1,932,383	-		ABIE53_005634	0.57	+0.0
1,932,383	-		ABIE53_005634	0.57	-1.2
1,932,447	+		ABIE53_005634	0.64	-1.1
1,932,448	-		ABIE53_005634	0.64	+0.1
1,932,448	-		ABIE53_005634	0.64	-0.5
1,932,528	+		ABIE53_005634	0.73	+0.9
1,932,529	-		ABIE53_005634	0.73	-0.7
1,932,561	-		ABIE53_005634	0.76	-0.7
1,932,565	-		ABIE53_005634	0.77	-0.7
1,932,565	-		ABIE53_005634	0.77	-0.1
1,932,570	+		ABIE53_005634	0.77	-0.9
1,932,571	-		ABIE53_005634	0.77	+0.1
1,932,571	-		ABIE53_005634	0.77	+0.3
1,932,571	-		ABIE53_005634	0.77	+0.2
1,932,606	-		ABIE53_005634	0.81	+1.9