Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005629

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005628 and ABIE53_005629 are separated by 220 nucleotidesABIE53_005629 and ABIE53_005630 are separated by 72 nucleotides ABIE53_005628: ABIE53_005628 - MHS family proline/betaine transporter-like MFS transporter, at 1,924,218 to 1,925,558 _005628 ABIE53_005629: ABIE53_005629 - 3-hydroxybutyrate dehydrogenase, at 1,925,779 to 1,926,588 _005629 ABIE53_005630: ABIE53_005630 - threonine dehydrogenase-like Zn-dependent dehydrogenase, at 1,926,661 to 1,927,683 _005630 Position (kb) 1925 1926 1927Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1924.784 kb on + strand, within ABIE53_005628at 1924.785 kb on - strand, within ABIE53_005628at 1924.785 kb on - strand, within ABIE53_005628at 1924.785 kb on - strand, within ABIE53_005628at 1924.797 kb on - strand, within ABIE53_005628at 1924.863 kb on - strand, within ABIE53_005628at 1924.949 kb on + strand, within ABIE53_005628at 1924.949 kb on + strand, within ABIE53_005628at 1925.049 kb on + strand, within ABIE53_005628at 1925.049 kb on + strand, within ABIE53_005628at 1925.049 kb on + strand, within ABIE53_005628at 1925.050 kb on - strand, within ABIE53_005628at 1925.050 kb on - strand, within ABIE53_005628at 1925.053 kb on + strand, within ABIE53_005628at 1925.054 kb on - strand, within ABIE53_005628at 1925.054 kb on - strand, within ABIE53_005628at 1925.061 kb on + strand, within ABIE53_005628at 1925.061 kb on + strand, within ABIE53_005628at 1925.061 kb on + strand, within ABIE53_005628at 1925.062 kb on - strand, within ABIE53_005628at 1925.062 kb on - strand, within ABIE53_005628at 1925.068 kb on + strand, within ABIE53_005628at 1925.068 kb on + strand, within ABIE53_005628at 1925.135 kb on + strand, within ABIE53_005628at 1925.136 kb on - strand, within ABIE53_005628at 1925.158 kb on + strand, within ABIE53_005628at 1925.158 kb on + strand, within ABIE53_005628at 1925.158 kb on + strand, within ABIE53_005628at 1925.190 kb on + strand, within ABIE53_005628at 1925.190 kb on + strand, within ABIE53_005628at 1925.190 kb on + strand, within ABIE53_005628at 1925.191 kb on - strand, within ABIE53_005628at 1925.191 kb on - strand, within ABIE53_005628at 1925.191 kb on - strand, within ABIE53_005628at 1925.213 kb on - strand, within ABIE53_005628at 1925.213 kb on - strand, within ABIE53_005628at 1925.213 kb on - strand, within ABIE53_005628at 1925.395 kb on + strand, within ABIE53_005628at 1925.453 kb on + strandat 1925.453 kb on + strandat 1925.454 kb on - strandat 1925.466 kb on - strandat 1925.467 kb on + strandat 1925.467 kb on + strandat 1925.467 kb on + strandat 1925.468 kb on - strandat 1925.468 kb on - strandat 1925.468 kb on - strandat 1925.477 kb on + strandat 1925.477 kb on + strandat 1925.502 kb on - strandat 1925.502 kb on - strandat 1925.502 kb on - strandat 1925.502 kb on - strandat 1925.641 kb on - strandat 1925.641 kb on - strandat 1925.710 kb on + strandat 1925.711 kb on - strandat 1925.806 kb on - strandat 1925.807 kb on + strandat 1925.957 kb on - strand, within ABIE53_005629at 1925.976 kb on + strand, within ABIE53_005629at 1926.049 kb on - strand, within ABIE53_005629at 1926.049 kb on - strand, within ABIE53_005629at 1926.053 kb on + strand, within ABIE53_005629at 1926.053 kb on + strand, within ABIE53_005629at 1926.054 kb on - strand, within ABIE53_005629at 1926.054 kb on - strand, within ABIE53_005629at 1926.057 kb on + strand, within ABIE53_005629at 1926.057 kb on + strand, within ABIE53_005629at 1926.058 kb on - strand, within ABIE53_005629at 1926.066 kb on + strand, within ABIE53_005629at 1926.066 kb on + strand, within ABIE53_005629at 1926.085 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.123 kb on - strand, within ABIE53_005629at 1926.123 kb on - strand, within ABIE53_005629at 1926.123 kb on - strand, within ABIE53_005629at 1926.123 kb on - strand, within ABIE53_005629at 1926.137 kb on + strand, within ABIE53_005629at 1926.144 kb on + strand, within ABIE53_005629at 1926.145 kb on - strand, within ABIE53_005629at 1926.165 kb on + strand, within ABIE53_005629at 1926.165 kb on + strand, within ABIE53_005629at 1926.166 kb on + strand, within ABIE53_005629at 1926.166 kb on - strand, within ABIE53_005629at 1926.166 kb on - strand, within ABIE53_005629at 1926.186 kb on + strand, within ABIE53_005629at 1926.215 kb on + strand, within ABIE53_005629at 1926.215 kb on + strand, within ABIE53_005629at 1926.215 kb on + strand, within ABIE53_005629at 1926.216 kb on - strand, within ABIE53_005629at 1926.216 kb on - strand, within ABIE53_005629at 1926.268 kb on + strand, within ABIE53_005629at 1926.269 kb on - strand, within ABIE53_005629at 1926.478 kb on + strand, within ABIE53_005629at 1926.478 kb on + strand, within ABIE53_005629at 1926.479 kb on - strand, within ABIE53_005629at 1926.479 kb on - strand, within ABIE53_005629at 1926.506 kb on + strand, within ABIE53_005629at 1926.506 kb on + strand, within ABIE53_005629at 1926.507 kb on - strand, within ABIE53_005629at 1926.632 kb on + strandat 1926.639 kb on + strandat 1926.639 kb on + strandat 1926.639 kb on + strandat 1926.640 kb on - strandat 1926.640 kb on - strandat 1926.640 kb on - strandat 1926.640 kb on - strandat 1926.657 kb on + strandat 1926.657 kb on + strandat 1926.657 kb on + strandat 1926.658 kb on - strandat 1926.660 kb on + strandat 1926.661 kb on - strandat 1926.661 kb on - strandat 1926.661 kb on - strandat 1926.690 kb on + strandat 1926.878 kb on + strand, within ABIE53_005630at 1926.878 kb on + strand, within ABIE53_005630at 1926.878 kb on + strand, within ABIE53_005630at 1926.878 kb on + strand, within ABIE53_005630at 1926.879 kb on - strand, within ABIE53_005630at 1926.879 kb on - strand, within ABIE53_005630at 1926.879 kb on - strand, within ABIE53_005630at 1926.922 kb on + strand, within ABIE53_005630at 1926.922 kb on + strand, within ABIE53_005630at 1926.922 kb on + strand, within ABIE53_005630at 1926.922 kb on + strand, within ABIE53_005630at 1926.922 kb on + strand, within ABIE53_005630at 1926.923 kb on - strand, within ABIE53_005630at 1926.923 kb on - strand, within ABIE53_005630at 1926.923 kb on - strand, within ABIE53_005630at 1926.923 kb on - strand, within ABIE53_005630at 1926.926 kb on - strand, within ABIE53_005630at 1926.926 kb on - strand, within ABIE53_005630at 1926.998 kb on - strand, within ABIE53_005630at 1927.030 kb on + strand, within ABIE53_005630at 1927.030 kb on + strand, within ABIE53_005630at 1927.030 kb on + strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.032 kb on + strand, within ABIE53_005630at 1927.032 kb on + strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.170 kb on + strand, within ABIE53_005630at 1927.170 kb on + strand, within ABIE53_005630at 1927.170 kb on + strand, within ABIE53_005630at 1927.170 kb on + strand, within ABIE53_005630at 1927.170 kb on + strand, within ABIE53_005630at 1927.269 kb on + strand, within ABIE53_005630at 1927.269 kb on + strand, within ABIE53_005630at 1927.270 kb on - strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.299 kb on - strand, within ABIE53_005630at 1927.299 kb on - strand, within ABIE53_005630at 1927.299 kb on - strand, within ABIE53_005630at 1927.316 kb on + strand, within ABIE53_005630at 1927.317 kb on - strand, within ABIE53_005630at 1927.332 kb on + strand, within ABIE53_005630at 1927.512 kb on - strand, within ABIE53_005630

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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1,924,784 + ABIE53_005628 0.42 -2.3
1,924,785 - ABIE53_005628 0.42 +1.9
1,924,785 - ABIE53_005628 0.42 +0.2
1,924,785 - ABIE53_005628 0.42 -0.9
1,924,797 - ABIE53_005628 0.43 -1.1
1,924,863 - ABIE53_005628 0.48 +0.3
1,924,949 + ABIE53_005628 0.55 -1.5
1,924,949 + ABIE53_005628 0.55 +0.1
1,925,049 + ABIE53_005628 0.62 -0.1
1,925,049 + ABIE53_005628 0.62 -0.9
1,925,049 + ABIE53_005628 0.62 -0.9
1,925,050 - ABIE53_005628 0.62 -1.4
1,925,050 - ABIE53_005628 0.62 +1.9
1,925,053 + ABIE53_005628 0.62 -1.4
1,925,054 - ABIE53_005628 0.62 -0.1
1,925,054 - ABIE53_005628 0.62 -0.6
1,925,061 + ABIE53_005628 0.63 -0.7
1,925,061 + ABIE53_005628 0.63 -0.3
1,925,061 + ABIE53_005628 0.63 -2.7
1,925,062 - ABIE53_005628 0.63 -0.9
1,925,062 - ABIE53_005628 0.63 -1.6
1,925,068 + ABIE53_005628 0.63 -0.4
1,925,068 + ABIE53_005628 0.63 +0.9
1,925,135 + ABIE53_005628 0.68 +0.3
1,925,136 - ABIE53_005628 0.68 +0.9
1,925,158 + ABIE53_005628 0.70 +1.5
1,925,158 + ABIE53_005628 0.70 +0.9
1,925,158 + ABIE53_005628 0.70 +0.7
1,925,190 + ABIE53_005628 0.72 -1.0
1,925,190 + ABIE53_005628 0.72 -0.5
1,925,190 + ABIE53_005628 0.72 +1.9
1,925,191 - ABIE53_005628 0.73 +0.0
1,925,191 - ABIE53_005628 0.73 -0.1
1,925,191 - ABIE53_005628 0.73 -0.9
1,925,213 - ABIE53_005628 0.74 -1.6
1,925,213 - ABIE53_005628 0.74 +0.6
1,925,213 - ABIE53_005628 0.74 -1.1
1,925,395 + ABIE53_005628 0.88 +0.3
1,925,453 + -1.6
1,925,453 + -0.6
1,925,454 - -0.4
1,925,466 - -1.1
1,925,467 + -0.7
1,925,467 + -1.1
1,925,467 + -1.4
1,925,468 - -0.6
1,925,468 - +0.3
1,925,468 - -1.8
1,925,477 + +1.2
1,925,477 + -0.7
1,925,502 - +0.6
1,925,502 - +1.6
1,925,502 - +1.1
1,925,502 - -1.1
1,925,641 - -1.4
1,925,641 - +0.9
1,925,710 + -1.6
1,925,711 - -0.9
1,925,806 - +0.0
1,925,807 + +0.3
1,925,957 - ABIE53_005629 0.22 +1.5
1,925,976 + ABIE53_005629 0.24 -0.3
1,926,049 - ABIE53_005629 0.33 -1.4
1,926,049 - ABIE53_005629 0.33 +0.4
1,926,053 + ABIE53_005629 0.34 +0.2
1,926,053 + ABIE53_005629 0.34 -0.6
1,926,054 - ABIE53_005629 0.34 +0.3
1,926,054 - ABIE53_005629 0.34 +0.9
1,926,057 + ABIE53_005629 0.34 +0.9
1,926,057 + ABIE53_005629 0.34 +0.1
1,926,058 - ABIE53_005629 0.34 -0.8
1,926,066 + ABIE53_005629 0.35 -0.4
1,926,066 + ABIE53_005629 0.35 +0.1
1,926,085 + ABIE53_005629 0.38 -0.4
1,926,122 + ABIE53_005629 0.42 -0.0
1,926,122 + ABIE53_005629 0.42 +0.9
1,926,122 + ABIE53_005629 0.42 -0.1
1,926,122 + ABIE53_005629 0.42 +0.7
1,926,122 + ABIE53_005629 0.42 -2.4
1,926,122 + ABIE53_005629 0.42 +1.9
1,926,122 + ABIE53_005629 0.42 +0.3
1,926,123 - ABIE53_005629 0.42 -0.4
1,926,123 - ABIE53_005629 0.42 -1.4
1,926,123 - ABIE53_005629 0.42 +0.3
1,926,123 - ABIE53_005629 0.42 -0.1
1,926,137 + ABIE53_005629 0.44 +0.9
1,926,144 + ABIE53_005629 0.45 +0.6
1,926,145 - ABIE53_005629 0.45 -0.1
1,926,165 + ABIE53_005629 0.48 -0.1
1,926,165 + ABIE53_005629 0.48 -1.3
1,926,166 + ABIE53_005629 0.48 +1.9
1,926,166 - ABIE53_005629 0.48 -0.9
1,926,166 - ABIE53_005629 0.48 +0.3
1,926,186 + ABIE53_005629 0.50 -0.2
1,926,215 + ABIE53_005629 0.54 -1.6
1,926,215 + ABIE53_005629 0.54 -1.4
1,926,215 + ABIE53_005629 0.54 +1.9
1,926,216 - ABIE53_005629 0.54 -0.7
1,926,216 - ABIE53_005629 0.54 -0.4
1,926,268 + ABIE53_005629 0.60 +1.5
1,926,269 - ABIE53_005629 0.60 +0.9
1,926,478 + ABIE53_005629 0.86 -0.4
1,926,478 + ABIE53_005629 0.86 -1.3
1,926,479 - ABIE53_005629 0.86 -1.7
1,926,479 - ABIE53_005629 0.86 -0.7
1,926,506 + ABIE53_005629 0.90 -0.4
1,926,506 + ABIE53_005629 0.90 -1.3
1,926,507 - ABIE53_005629 0.90 -1.7
1,926,632 + +0.7
1,926,639 + -0.1
1,926,639 + +0.6
1,926,639 + +1.6
1,926,640 - -0.7
1,926,640 - +1.6
1,926,640 - +0.9
1,926,640 - +0.0
1,926,657 + -1.7
1,926,657 + +0.9
1,926,657 + -1.1
1,926,658 - -0.7
1,926,660 + +0.9
1,926,661 - +0.3
1,926,661 - -2.1
1,926,661 - -0.1
1,926,690 + -1.5
1,926,878 + ABIE53_005630 0.21 -0.9
1,926,878 + ABIE53_005630 0.21 +0.6
1,926,878 + ABIE53_005630 0.21 -1.4
1,926,878 + ABIE53_005630 0.21 -0.6
1,926,879 - ABIE53_005630 0.21 -0.1
1,926,879 - ABIE53_005630 0.21 +1.9
1,926,879 - ABIE53_005630 0.21 -0.0
1,926,922 + ABIE53_005630 0.26 +0.9
1,926,922 + ABIE53_005630 0.26 -0.1
1,926,922 + ABIE53_005630 0.26 +0.9
1,926,922 + ABIE53_005630 0.26 -0.7
1,926,922 + ABIE53_005630 0.26 +1.5
1,926,923 - ABIE53_005630 0.26 +0.1
1,926,923 - ABIE53_005630 0.26 -0.1
1,926,923 - ABIE53_005630 0.26 -0.7
1,926,923 - ABIE53_005630 0.26 -0.4
1,926,926 - ABIE53_005630 0.26 +1.3
1,926,926 - ABIE53_005630 0.26 +1.3
1,926,998 - ABIE53_005630 0.33 -0.2
1,927,030 + ABIE53_005630 0.36 +1.9
1,927,030 + ABIE53_005630 0.36 +0.1
1,927,030 + ABIE53_005630 0.36 +1.9
1,927,031 - ABIE53_005630 0.36 -1.9
1,927,031 - ABIE53_005630 0.36 -0.1
1,927,031 - ABIE53_005630 0.36 -0.5
1,927,031 - ABIE53_005630 0.36 -0.7
1,927,031 - ABIE53_005630 0.36 -0.1
1,927,031 - ABIE53_005630 0.36 -0.8
1,927,032 + ABIE53_005630 0.36 -0.7
1,927,032 + ABIE53_005630 0.36 -0.1
1,927,033 - ABIE53_005630 0.36 +0.3
1,927,033 - ABIE53_005630 0.36 -0.7
1,927,033 - ABIE53_005630 0.36 -0.0
1,927,033 - ABIE53_005630 0.36 -1.1
1,927,033 - ABIE53_005630 0.36 -0.4
1,927,033 - ABIE53_005630 0.36 +0.1
1,927,170 + ABIE53_005630 0.50 +0.7
1,927,170 + ABIE53_005630 0.50 -0.8
1,927,170 + ABIE53_005630 0.50 +0.3
1,927,170 + ABIE53_005630 0.50 -0.1
1,927,170 + ABIE53_005630 0.50 +0.9
1,927,269 + ABIE53_005630 0.59 -0.7
1,927,269 + ABIE53_005630 0.59 -1.3
1,927,270 - ABIE53_005630 0.60 +0.9
1,927,298 + ABIE53_005630 0.62 -0.1
1,927,298 + ABIE53_005630 0.62 -0.1
1,927,298 + ABIE53_005630 0.62 +1.9
1,927,298 + ABIE53_005630 0.62 +0.9
1,927,298 + ABIE53_005630 0.62 +0.3
1,927,298 + ABIE53_005630 0.62 -0.8
1,927,298 + ABIE53_005630 0.62 -0.8
1,927,298 + ABIE53_005630 0.62 +0.3
1,927,299 - ABIE53_005630 0.62 -0.7
1,927,299 - ABIE53_005630 0.62 +1.7
1,927,299 - ABIE53_005630 0.62 -3.0
1,927,316 + ABIE53_005630 0.64 -0.6
1,927,317 - ABIE53_005630 0.64 -1.4
1,927,332 + ABIE53_005630 0.66 -0.1
1,927,512 - ABIE53_005630 0.83 +0.9

Or see this region's nucleotide sequence