Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0048

Experiment: MoYLS4 with Nitrite 0.025mg/mL + Zinc Sulfate 0.1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliN and DVU0047 are separated by 25 nucleotidesDVU0047 and DVU0048 are separated by 20 nucleotidesDVU0048 and DVU0049 overlap by 4 nucleotides DVU0046: fliN - flagellar motor switch protein FliN (TIGR), at 52,090 to 52,602 fliN DVU0047: DVU0047 - flagellar protein FliL (TIGR), at 52,628 to 53,143 DVU0047 DVU0048: DVU0048 - chemotaxis protein MotB (TIGR), at 53,164 to 53,904 DVU0048 DVU0049: DVU0049 - OmpA family protein (TIGR), at 53,901 to 54,995 DVU0049 Position (kb) 53 54Strain fitness (log2 ratio) -2 -1 0 1at 52.212 kb on - strand, within fliNat 52.226 kb on + strand, within fliNat 52.236 kb on + strand, within fliNat 52.257 kb on - strand, within fliNat 52.267 kb on - strand, within fliNat 52.335 kb on + strand, within fliNat 52.391 kb on + strand, within fliNat 52.392 kb on - strand, within fliNat 52.476 kb on + strand, within fliNat 52.527 kb on + strand, within fliNat 52.528 kb on + strand, within fliNat 52.576 kb on + strandat 52.584 kb on - strandat 52.602 kb on + strandat 52.619 kb on + strandat 52.687 kb on + strand, within DVU0047at 52.705 kb on + strand, within DVU0047at 52.718 kb on - strand, within DVU0047at 52.769 kb on - strand, within DVU0047at 52.792 kb on + strand, within DVU0047at 52.841 kb on - strand, within DVU0047at 52.939 kb on - strand, within DVU0047at 53.014 kb on - strand, within DVU0047at 53.130 kb on + strandat 53.151 kb on + strandat 53.154 kb on - strandat 53.192 kb on + strandat 53.281 kb on + strand, within DVU0048at 53.282 kb on + strand, within DVU0048at 53.290 kb on - strand, within DVU0048at 53.307 kb on - strand, within DVU0048at 53.374 kb on + strand, within DVU0048at 53.410 kb on - strand, within DVU0048at 53.410 kb on - strand, within DVU0048at 53.430 kb on + strand, within DVU0048at 53.487 kb on - strand, within DVU0048at 53.570 kb on - strand, within DVU0048at 53.570 kb on - strand, within DVU0048at 53.574 kb on + strand, within DVU0048at 53.580 kb on + strand, within DVU0048at 53.583 kb on - strand, within DVU0048at 53.595 kb on - strand, within DVU0048at 53.596 kb on - strand, within DVU0048at 53.603 kb on + strand, within DVU0048at 53.603 kb on + strand, within DVU0048at 53.644 kb on + strand, within DVU0048at 53.662 kb on - strand, within DVU0048at 53.700 kb on + strand, within DVU0048at 53.708 kb on - strand, within DVU0048at 53.708 kb on - strand, within DVU0048at 53.767 kb on + strand, within DVU0048at 53.777 kb on - strand, within DVU0048at 53.850 kb on + strandat 53.858 kb on - strandat 53.953 kb on - strandat 53.953 kb on - strandat 53.953 kb on - strandat 53.962 kb on + strandat 53.965 kb on - strandat 54.105 kb on - strand, within DVU0049at 54.274 kb on + strand, within DVU0049at 54.282 kb on - strand, within DVU0049at 54.290 kb on + strand, within DVU0049at 54.456 kb on + strand, within DVU0049at 54.464 kb on - strand, within DVU0049at 54.482 kb on + strand, within DVU0049at 54.503 kb on - strand, within DVU0049at 54.514 kb on + strand, within DVU0049at 54.543 kb on + strand, within DVU0049at 54.553 kb on - strand, within DVU0049at 54.563 kb on - strand, within DVU0049at 54.566 kb on + strand, within DVU0049at 54.596 kb on + strand, within DVU0049at 54.605 kb on + strand, within DVU0049at 54.614 kb on + strand, within DVU0049at 54.624 kb on + strand, within DVU0049at 54.646 kb on + strand, within DVU0049at 54.677 kb on + strand, within DVU0049at 54.685 kb on + strand, within DVU0049at 54.685 kb on + strand, within DVU0049at 54.693 kb on - strand, within DVU0049at 54.693 kb on - strand, within DVU0049at 54.707 kb on + strand, within DVU0049at 54.712 kb on + strand, within DVU0049at 54.730 kb on - strand, within DVU0049at 54.778 kb on - strand, within DVU0049at 54.809 kb on + strand, within DVU0049at 54.809 kb on + strand, within DVU0049at 54.817 kb on - strand, within DVU0049

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.025mg/mL + Zinc Sulfate 0.1mM
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52,212 - fliN DVU0046 0.24 +0.5
52,226 + fliN DVU0046 0.27 +0.3
52,236 + fliN DVU0046 0.28 +0.0
52,257 - fliN DVU0046 0.33 -0.1
52,267 - fliN DVU0046 0.35 +0.3
52,335 + fliN DVU0046 0.48 +0.5
52,391 + fliN DVU0046 0.59 +0.1
52,392 - fliN DVU0046 0.59 +1.2
52,476 + fliN DVU0046 0.75 -0.9
52,527 + fliN DVU0046 0.85 -0.9
52,528 + fliN DVU0046 0.85 +0.7
52,576 + +0.4
52,584 - +0.5
52,602 + +0.4
52,619 + +0.1
52,687 + DVU0047 0.11 +0.6
52,705 + DVU0047 0.15 +0.1
52,718 - DVU0047 0.17 +0.8
52,769 - DVU0047 0.27 +0.4
52,792 + DVU0047 0.32 +0.4
52,841 - DVU0047 0.41 +0.2
52,939 - DVU0047 0.60 -0.2
53,014 - DVU0047 0.75 +0.8
53,130 + +0.3
53,151 + +0.0
53,154 - -0.2
53,192 + +0.3
53,281 + DVU0048 0.16 +0.7
53,282 + DVU0048 0.16 +0.5
53,290 - DVU0048 0.17 -1.6
53,307 - DVU0048 0.19 -0.5
53,374 + DVU0048 0.28 +0.2
53,410 - DVU0048 0.33 -0.6
53,410 - DVU0048 0.33 +1.5
53,430 + DVU0048 0.36 +0.1
53,487 - DVU0048 0.44 +0.3
53,570 - DVU0048 0.55 -2.0
53,570 - DVU0048 0.55 +0.2
53,574 + DVU0048 0.55 +0.5
53,580 + DVU0048 0.56 +0.0
53,583 - DVU0048 0.57 +0.3
53,595 - DVU0048 0.58 +0.2
53,596 - DVU0048 0.58 +0.3
53,603 + DVU0048 0.59 +0.5
53,603 + DVU0048 0.59 +0.1
53,644 + DVU0048 0.65 +1.0
53,662 - DVU0048 0.67 +0.3
53,700 + DVU0048 0.72 +0.7
53,708 - DVU0048 0.73 +0.4
53,708 - DVU0048 0.73 -0.9
53,767 + DVU0048 0.81 +0.2
53,777 - DVU0048 0.83 -0.1
53,850 + +0.1
53,858 - -0.7
53,953 - -0.0
53,953 - -0.1
53,953 - +0.3
53,962 + +0.8
53,965 - -1.4
54,105 - DVU0049 0.19 +0.5
54,274 + DVU0049 0.34 +0.2
54,282 - DVU0049 0.35 -1.2
54,290 + DVU0049 0.36 +0.2
54,456 + DVU0049 0.51 -0.1
54,464 - DVU0049 0.51 -0.1
54,482 + DVU0049 0.53 -0.3
54,503 - DVU0049 0.55 +1.2
54,514 + DVU0049 0.56 -0.2
54,543 + DVU0049 0.59 +0.1
54,553 - DVU0049 0.60 -1.0
54,563 - DVU0049 0.60 +0.8
54,566 + DVU0049 0.61 +0.1
54,596 + DVU0049 0.63 +0.5
54,605 + DVU0049 0.64 +0.2
54,614 + DVU0049 0.65 +0.4
54,624 + DVU0049 0.66 +0.5
54,646 + DVU0049 0.68 -0.0
54,677 + DVU0049 0.71 -0.4
54,685 + DVU0049 0.72 +0.2
54,685 + DVU0049 0.72 +0.6
54,693 - DVU0049 0.72 -0.9
54,693 - DVU0049 0.72 +0.6
54,707 + DVU0049 0.74 +0.0
54,712 + DVU0049 0.74 +0.1
54,730 - DVU0049 0.76 -0.9
54,778 - DVU0049 0.80 -0.5
54,809 + DVU0049 0.83 -0.1
54,809 + DVU0049 0.83 -0.5
54,817 - DVU0049 0.84 +1.6

Or see this region's nucleotide sequence