Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.74.1 and Xcc-8004.75.1 overlap by 115 nucleotides Xcc-8004.75.1 and Xcc-8004.76.1 are separated by 90 nucleotides Xcc-8004.76.1 and Xcc-8004.77.1 are separated by 198 nucleotides Xcc-8004.77.1 and Xcc-8004.78.1 are separated by 113 nucleotides
Xcc-8004.74.1: Xcc-8004.74.1 - NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 75,551 to 76,150
Xcc-8004.74.1
Xcc-8004.75.1: Xcc-8004.75.1 - hypothetical protein, at 76,036 to 76,377
Xcc-8004.75.1
Xcc-8004.76.1: Xcc-8004.76.1 - Transcriptional regulator, HxlR family, at 76,468 to 76,818
Xcc-8004.76.1
Xcc-8004.77.1: Xcc-8004.77.1 - hypothetical protein, at 77,017 to 77,220
Xcc-8004.77.1
Xcc-8004.78.1: Xcc-8004.78.1 - regulatory protein CII, at 77,334 to 78,434
Xcc-8004.78.1
Position (kb) 77
78 Strain fitness (log2 ratio) -2
-1
0
1
2 at 76.037 kb on + strand at 76.037 kb on + strand at 76.037 kb on + strand at 76.038 kb on - strand at 76.049 kb on - strand at 76.049 kb on - strand at 76.049 kb on - strand at 76.150 kb on + strand at 76.150 kb on + strand at 76.150 kb on + strand at 76.150 kb on + strand at 76.150 kb on + strand at 76.150 kb on + strand at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.151 kb on - strand, within Xcc-8004.75.1 at 76.404 kb on + strand at 76.404 kb on + strand at 76.404 kb on + strand at 76.404 kb on + strand at 76.404 kb on + strand at 76.405 kb on - strand at 76.405 kb on - strand at 76.405 kb on - strand at 76.405 kb on - strand at 76.454 kb on + strand at 76.454 kb on + strand at 76.454 kb on + strand at 76.454 kb on + strand at 76.454 kb on + strand at 76.455 kb on - strand at 76.589 kb on - strand, within Xcc-8004.76.1 at 76.674 kb on - strand, within Xcc-8004.76.1 at 76.674 kb on - strand, within Xcc-8004.76.1 at 76.674 kb on - strand, within Xcc-8004.76.1 at 76.674 kb on - strand, within Xcc-8004.76.1 at 76.676 kb on + strand, within Xcc-8004.76.1 at 76.676 kb on + strand, within Xcc-8004.76.1 at 76.677 kb on - strand, within Xcc-8004.76.1 at 76.677 kb on - strand, within Xcc-8004.76.1 at 76.677 kb on - strand, within Xcc-8004.76.1 at 76.688 kb on - strand, within Xcc-8004.76.1 at 76.688 kb on - strand, within Xcc-8004.76.1 at 76.715 kb on - strand, within Xcc-8004.76.1 at 76.715 kb on - strand, within Xcc-8004.76.1 at 76.865 kb on - strand at 76.887 kb on - strand at 76.887 kb on - strand at 76.887 kb on - strand at 76.900 kb on - strand at 76.900 kb on - strand at 76.931 kb on - strand at 76.975 kb on - strand at 76.975 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.015 kb on - strand at 77.063 kb on - strand, within Xcc-8004.77.1 at 77.063 kb on - strand, within Xcc-8004.77.1 at 77.104 kb on - strand, within Xcc-8004.77.1 at 77.107 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.159 kb on - strand, within Xcc-8004.77.1 at 77.166 kb on - strand, within Xcc-8004.77.1 at 77.166 kb on - strand, within Xcc-8004.77.1 at 77.181 kb on - strand, within Xcc-8004.77.1 at 77.181 kb on - strand, within Xcc-8004.77.1 at 77.186 kb on - strand, within Xcc-8004.77.1 at 77.269 kb on - strand at 77.269 kb on - strand at 77.269 kb on - strand at 77.293 kb on - strand at 77.293 kb on - strand at 77.293 kb on - strand at 77.317 kb on - strand at 77.317 kb on - strand at 77.317 kb on - strand at 77.317 kb on - strand at 77.317 kb on - strand at 77.329 kb on - strand at 77.329 kb on - strand at 77.329 kb on - strand at 77.329 kb on - strand at 77.343 kb on - strand at 77.343 kb on - strand at 77.343 kb on - strand at 77.355 kb on + strand at 77.355 kb on + strand at 77.384 kb on - strand at 77.415 kb on - strand at 77.415 kb on - strand at 77.436 kb on - strand at 77.436 kb on - strand at 77.436 kb on - strand at 77.436 kb on - strand at 77.595 kb on - strand, within Xcc-8004.78.1 at 77.669 kb on - strand, within Xcc-8004.78.1 at 77.685 kb on - strand, within Xcc-8004.78.1 at 77.690 kb on - strand, within Xcc-8004.78.1 at 77.690 kb on - strand, within Xcc-8004.78.1 at 77.690 kb on - strand, within Xcc-8004.78.1 at 77.725 kb on - strand, within Xcc-8004.78.1 at 77.756 kb on - strand, within Xcc-8004.78.1 at 77.856 kb on - strand, within Xcc-8004.78.1 at 77.856 kb on - strand, within Xcc-8004.78.1 at 77.935 kb on - strand, within Xcc-8004.78.1 at 77.946 kb on - strand, within Xcc-8004.78.1 at 77.946 kb on - strand, within Xcc-8004.78.1 at 77.979 kb on - strand, within Xcc-8004.78.1 at 77.979 kb on - strand, within Xcc-8004.78.1 at 77.979 kb on - strand, within Xcc-8004.78.1 at 77.979 kb on - strand, within Xcc-8004.78.1 at 78.066 kb on - strand, within Xcc-8004.78.1 at 78.077 kb on - strand, within Xcc-8004.78.1 at 78.077 kb on - strand, within Xcc-8004.78.1 at 78.077 kb on - strand, within Xcc-8004.78.1 at 78.088 kb on - strand, within Xcc-8004.78.1 at 78.088 kb on - strand, within Xcc-8004.78.1 at 78.090 kb on - strand, within Xcc-8004.78.1 at 78.090 kb on - strand, within Xcc-8004.78.1 at 78.201 kb on - strand, within Xcc-8004.78.1 at 78.201 kb on - strand, within Xcc-8004.78.1 at 78.201 kb on - strand, within Xcc-8004.78.1 at 78.203 kb on - strand, within Xcc-8004.78.1 at 78.203 kb on - strand, within Xcc-8004.78.1 at 78.203 kb on - strand, within Xcc-8004.78.1 at 78.211 kb on - strand, within Xcc-8004.78.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 76,037 + -0.0 76,037 + +0.3 76,037 + +0.1 76,038 - -1.2 76,049 - +0.9 76,049 - +0.4 76,049 - -0.3 76,150 + +0.0 76,150 + +0.1 76,150 + -0.1 76,150 + -0.4 76,150 + -0.4 76,150 + +0.7 76,151 - Xcc-8004.75.1 0.34 +0.5 76,151 - Xcc-8004.75.1 0.34 -1.2 76,151 - Xcc-8004.75.1 0.34 -0.5 76,151 - Xcc-8004.75.1 0.34 +1.3 76,151 - Xcc-8004.75.1 0.34 -0.5 76,151 - Xcc-8004.75.1 0.34 +0.7 76,151 - Xcc-8004.75.1 0.34 +1.3 76,404 + -0.1 76,404 + +0.2 76,404 + +0.7 76,404 + -0.7 76,404 + -1.6 76,405 - +0.9 76,405 - +1.4 76,405 - -0.7 76,405 - +1.5 76,454 + +0.1 76,454 + -0.1 76,454 + +0.6 76,454 + +1.8 76,454 + +1.0 76,455 - -2.3 76,589 - Xcc-8004.76.1 0.34 +0.5 76,674 - Xcc-8004.76.1 0.59 -0.9 76,674 - Xcc-8004.76.1 0.59 +0.5 76,674 - Xcc-8004.76.1 0.59 +0.9 76,674 - Xcc-8004.76.1 0.59 +0.6 76,676 + Xcc-8004.76.1 0.59 -1.5 76,676 + Xcc-8004.76.1 0.59 -1.1 76,677 - Xcc-8004.76.1 0.60 -0.4 76,677 - Xcc-8004.76.1 0.60 -0.5 76,677 - Xcc-8004.76.1 0.60 +0.5 76,688 - Xcc-8004.76.1 0.63 -0.1 76,688 - Xcc-8004.76.1 0.63 -0.1 76,715 - Xcc-8004.76.1 0.70 -0.8 76,715 - Xcc-8004.76.1 0.70 +0.5 76,865 - -0.5 76,887 - +0.6 76,887 - +0.9 76,887 - -0.3 76,900 - -1.1 76,900 - -0.1 76,931 - -0.0 76,975 - -0.0 76,975 - -1.4 77,015 - +0.9 77,015 - +0.2 77,015 - +1.7 77,015 - -0.9 77,015 - +1.9 77,015 - +1.3 77,015 - +0.9 77,015 - +0.9 77,015 - +0.3 77,015 - -0.6 77,015 - -0.5 77,015 - -0.5 77,015 - +1.1 77,015 - +0.1 77,063 - Xcc-8004.77.1 0.23 +0.3 77,063 - Xcc-8004.77.1 0.23 -1.1 77,104 - Xcc-8004.77.1 0.43 +0.3 77,107 - Xcc-8004.77.1 0.44 -1.1 77,159 - Xcc-8004.77.1 0.70 -0.4 77,159 - Xcc-8004.77.1 0.70 -1.1 77,159 - Xcc-8004.77.1 0.70 +0.4 77,159 - Xcc-8004.77.1 0.70 +0.9 77,159 - Xcc-8004.77.1 0.70 -0.2 77,159 - Xcc-8004.77.1 0.70 -0.1 77,159 - Xcc-8004.77.1 0.70 +0.6 77,159 - Xcc-8004.77.1 0.70 -0.7 77,159 - Xcc-8004.77.1 0.70 -1.3 77,159 - Xcc-8004.77.1 0.70 -0.1 77,166 - Xcc-8004.77.1 0.73 +0.1 77,166 - Xcc-8004.77.1 0.73 +1.9 77,181 - Xcc-8004.77.1 0.80 -0.8 77,181 - Xcc-8004.77.1 0.80 -0.7 77,186 - Xcc-8004.77.1 0.83 -1.0 77,269 - -0.8 77,269 - +0.3 77,269 - +0.5 77,293 - -0.0 77,293 - +0.9 77,293 - -0.4 77,317 - +0.7 77,317 - -0.1 77,317 - -0.3 77,317 - -1.1 77,317 - +0.9 77,329 - +0.1 77,329 - +0.1 77,329 - +0.7 77,329 - +1.4 77,343 - +0.9 77,343 - -0.7 77,343 - -0.8 77,355 + +0.3 77,355 + -2.2 77,384 - -0.1 77,415 - -0.8 77,415 - +1.2 77,436 - -0.6 77,436 - -1.7 77,436 - +1.1 77,436 - +0.1 77,595 - Xcc-8004.78.1 0.24 -0.4 77,669 - Xcc-8004.78.1 0.30 -0.8 77,685 - Xcc-8004.78.1 0.32 -2.0 77,690 - Xcc-8004.78.1 0.32 +0.4 77,690 - Xcc-8004.78.1 0.32 -0.8 77,690 - Xcc-8004.78.1 0.32 +1.2 77,725 - Xcc-8004.78.1 0.36 +0.3 77,756 - Xcc-8004.78.1 0.38 -0.1 77,856 - Xcc-8004.78.1 0.47 +0.7 77,856 - Xcc-8004.78.1 0.47 +0.9 77,935 - Xcc-8004.78.1 0.55 -1.3 77,946 - Xcc-8004.78.1 0.56 +1.3 77,946 - Xcc-8004.78.1 0.56 +0.3 77,979 - Xcc-8004.78.1 0.59 +0.1 77,979 - Xcc-8004.78.1 0.59 +0.3 77,979 - Xcc-8004.78.1 0.59 -0.7 77,979 - Xcc-8004.78.1 0.59 -0.1 78,066 - Xcc-8004.78.1 0.66 +0.4 78,077 - Xcc-8004.78.1 0.67 +0.6 78,077 - Xcc-8004.78.1 0.67 -0.7 78,077 - Xcc-8004.78.1 0.67 -0.2 78,088 - Xcc-8004.78.1 0.68 +1.4 78,088 - Xcc-8004.78.1 0.68 +0.2 78,090 - Xcc-8004.78.1 0.69 +1.1 78,090 - Xcc-8004.78.1 0.69 +2.7 78,201 - Xcc-8004.78.1 0.79 +0.1 78,201 - Xcc-8004.78.1 0.79 -0.9 78,201 - Xcc-8004.78.1 0.79 -1.7 78,203 - Xcc-8004.78.1 0.79 -0.4 78,203 - Xcc-8004.78.1 0.79 +0.3 78,203 - Xcc-8004.78.1 0.79 -1.1 78,211 - Xcc-8004.78.1 0.80 -0.0
Or see this region's nucleotide sequence