Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.563.1 and Xcc-8004.564.1 are separated by 167 nucleotides Xcc-8004.564.1 and Xcc-8004.566.1 overlap by 4 nucleotides Xcc-8004.566.1 and Xcc-8004.567.1 overlap by 134 nucleotides Xcc-8004.567.1 and Xcc-8004.568.1 overlap by 4 nucleotides Xcc-8004.568.1 and Xcc-8004.565.1 overlap by 76 nucleotides
Xcc-8004.563.1: Xcc-8004.563.1 - hypothetical protein, at 522,275 to 522,673
Xcc-8004.563.1
Xcc-8004.564.1: Xcc-8004.564.1 - Mobile element protein, at 522,841 to 523,053
Xcc-8004.564.1
Xcc-8004.566.1: Xcc-8004.566.1 - Mobile element protein, at 523,050 to 523,313
Xcc-8004.566.1
Xcc-8004.567.1: Xcc-8004.567.1 - hypothetical protein, at 523,180 to 523,356
Xcc-8004.567.1
Xcc-8004.568.1: Xcc-8004.568.1 - hypothetical protein, at 523,353 to 523,550
Xcc-8004.568.1
Xcc-8004.565.1: Xcc-8004.565.1 - Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168), at 523,475 to 524,983
Xcc-8004.565.1
Position (kb) 522
523 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 521.670 kb on - strand at 521.678 kb on + strand at 521.678 kb on + strand at 521.678 kb on + strand at 521.679 kb on - strand at 521.685 kb on + strand at 521.686 kb on - strand at 521.686 kb on - strand at 521.686 kb on - strand at 521.686 kb on - strand at 521.720 kb on - strand at 521.720 kb on - strand at 521.867 kb on + strand at 521.868 kb on - strand at 521.868 kb on - strand at 521.868 kb on - strand at 521.923 kb on + strand at 521.923 kb on + strand at 521.939 kb on + strand at 521.940 kb on - strand at 521.949 kb on + strand at 522.039 kb on + strand at 522.039 kb on + strand at 522.039 kb on + strand at 522.040 kb on - strand at 522.040 kb on - strand at 522.040 kb on - strand at 522.040 kb on - strand at 522.040 kb on - strand at 522.040 kb on - strand at 522.106 kb on + strand at 522.176 kb on + strand at 522.176 kb on + strand at 522.176 kb on + strand at 522.210 kb on - strand at 522.248 kb on - strand at 522.255 kb on - strand at 522.273 kb on - strand at 522.273 kb on - strand at 522.307 kb on + strand at 522.307 kb on + strand at 522.308 kb on - strand at 522.308 kb on - strand at 522.308 kb on - strand at 522.311 kb on + strand at 522.311 kb on + strand at 522.311 kb on + strand at 522.311 kb on + strand at 522.311 kb on + strand at 522.311 kb on + strand at 522.311 kb on + strand at 522.312 kb on - strand at 522.312 kb on - strand at 522.312 kb on - strand at 522.312 kb on - strand at 522.313 kb on + strand at 522.313 kb on + strand at 522.313 kb on + strand at 522.314 kb on - strand at 522.317 kb on + strand, within Xcc-8004.563.1 at 522.317 kb on + strand, within Xcc-8004.563.1 at 522.318 kb on - strand, within Xcc-8004.563.1 at 522.415 kb on + strand, within Xcc-8004.563.1 at 522.415 kb on + strand, within Xcc-8004.563.1 at 522.415 kb on + strand, within Xcc-8004.563.1 at 522.415 kb on + strand, within Xcc-8004.563.1 at 522.415 kb on + strand, within Xcc-8004.563.1 at 522.415 kb on + strand, within Xcc-8004.563.1 at 522.416 kb on - strand, within Xcc-8004.563.1 at 522.416 kb on - strand, within Xcc-8004.563.1 at 522.416 kb on - strand, within Xcc-8004.563.1 at 522.444 kb on + strand, within Xcc-8004.563.1 at 522.444 kb on + strand, within Xcc-8004.563.1 at 522.444 kb on + strand, within Xcc-8004.563.1 at 522.444 kb on + strand, within Xcc-8004.563.1 at 522.445 kb on - strand, within Xcc-8004.563.1 at 522.512 kb on - strand, within Xcc-8004.563.1 at 522.538 kb on + strand, within Xcc-8004.563.1 at 522.538 kb on + strand, within Xcc-8004.563.1 at 522.538 kb on + strand, within Xcc-8004.563.1 at 522.538 kb on + strand, within Xcc-8004.563.1 at 522.539 kb on - strand, within Xcc-8004.563.1 at 522.539 kb on - strand, within Xcc-8004.563.1 at 522.539 kb on - strand, within Xcc-8004.563.1 at 522.539 kb on - strand, within Xcc-8004.563.1 at 522.539 kb on - strand, within Xcc-8004.563.1 at 522.543 kb on - strand, within Xcc-8004.563.1 at 522.543 kb on - strand, within Xcc-8004.563.1 at 522.543 kb on - strand, within Xcc-8004.563.1 at 522.543 kb on - strand, within Xcc-8004.563.1 at 522.543 kb on - strand, within Xcc-8004.563.1 at 522.560 kb on + strand, within Xcc-8004.563.1 at 522.561 kb on - strand, within Xcc-8004.563.1 at 522.561 kb on - strand, within Xcc-8004.563.1 at 522.561 kb on - strand, within Xcc-8004.563.1 at 522.565 kb on + strand, within Xcc-8004.563.1 at 522.565 kb on + strand, within Xcc-8004.563.1 at 522.566 kb on - strand, within Xcc-8004.563.1 at 522.566 kb on - strand, within Xcc-8004.563.1 at 522.566 kb on - strand, within Xcc-8004.563.1 at 522.566 kb on - strand, within Xcc-8004.563.1 at 522.569 kb on + strand, within Xcc-8004.563.1 at 522.605 kb on - strand, within Xcc-8004.563.1 at 522.605 kb on - strand, within Xcc-8004.563.1 at 522.605 kb on - strand, within Xcc-8004.563.1 at 522.608 kb on - strand, within Xcc-8004.563.1 at 522.624 kb on + strand, within Xcc-8004.563.1 at 522.626 kb on + strand, within Xcc-8004.563.1 at 522.627 kb on - strand, within Xcc-8004.563.1 at 522.627 kb on - strand, within Xcc-8004.563.1 at 522.635 kb on + strand at 522.635 kb on + strand at 522.646 kb on - strand at 522.740 kb on + strand at 522.740 kb on + strand at 522.760 kb on + strand at 522.760 kb on + strand at 522.760 kb on + strand at 522.761 kb on - strand at 522.762 kb on + strand at 522.762 kb on + strand at 522.763 kb on - strand at 522.804 kb on + strand at 522.804 kb on + strand at 522.805 kb on - strand at 522.967 kb on + strand, within Xcc-8004.564.1 at 523.001 kb on - strand, within Xcc-8004.564.1 at 523.017 kb on - strand, within Xcc-8004.564.1 at 523.017 kb on - strand, within Xcc-8004.564.1 at 523.044 kb on + strand at 523.232 kb on + strand at 523.232 kb on + strand at 523.233 kb on - strand at 523.233 kb on - strand at 523.344 kb on + strand at 523.344 kb on + strand at 523.344 kb on + strand at 523.345 kb on - strand at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.453 kb on + strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1 at 523.454 kb on - strand, within Xcc-8004.568.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 521,670 - -0.3 521,678 + -1.0 521,678 + -0.3 521,678 + -0.1 521,679 - -0.8 521,685 + -1.0 521,686 - +0.9 521,686 - +1.5 521,686 - -0.1 521,686 - -0.4 521,720 - +0.4 521,720 - +0.3 521,867 + -0.9 521,868 - -1.1 521,868 - +0.9 521,868 - +0.0 521,923 + +1.3 521,923 + -1.9 521,939 + -0.5 521,940 - +1.1 521,949 + -1.0 522,039 + -0.0 522,039 + +0.2 522,039 + +0.9 522,040 - -0.9 522,040 - -0.3 522,040 - +1.3 522,040 - +0.9 522,040 - +0.2 522,040 - +0.8 522,106 + -0.9 522,176 + +0.4 522,176 + -0.8 522,176 + -0.0 522,210 - +0.5 522,248 - -0.2 522,255 - +1.5 522,273 - -0.3 522,273 - +0.6 522,307 + +0.0 522,307 + -1.3 522,308 - +0.5 522,308 - +1.5 522,308 - +0.2 522,311 + -1.7 522,311 + +1.1 522,311 + -0.1 522,311 + +1.1 522,311 + +0.7 522,311 + +0.2 522,311 + +1.3 522,312 - +0.4 522,312 - +0.9 522,312 - +1.3 522,312 - -0.1 522,313 + +0.4 522,313 + +0.2 522,313 + +0.4 522,314 - -1.1 522,317 + Xcc-8004.563.1 0.11 -0.7 522,317 + Xcc-8004.563.1 0.11 +0.9 522,318 - Xcc-8004.563.1 0.11 -0.7 522,415 + Xcc-8004.563.1 0.35 +0.9 522,415 + Xcc-8004.563.1 0.35 +1.6 522,415 + Xcc-8004.563.1 0.35 -1.8 522,415 + Xcc-8004.563.1 0.35 -0.7 522,415 + Xcc-8004.563.1 0.35 -1.0 522,415 + Xcc-8004.563.1 0.35 +2.3 522,416 - Xcc-8004.563.1 0.35 +0.6 522,416 - Xcc-8004.563.1 0.35 -0.0 522,416 - Xcc-8004.563.1 0.35 -1.9 522,444 + Xcc-8004.563.1 0.42 +0.6 522,444 + Xcc-8004.563.1 0.42 +0.9 522,444 + Xcc-8004.563.1 0.42 -0.0 522,444 + Xcc-8004.563.1 0.42 +0.6 522,445 - Xcc-8004.563.1 0.43 -0.2 522,512 - Xcc-8004.563.1 0.59 +1.2 522,538 + Xcc-8004.563.1 0.66 -2.1 522,538 + Xcc-8004.563.1 0.66 +0.9 522,538 + Xcc-8004.563.1 0.66 -0.9 522,538 + Xcc-8004.563.1 0.66 +0.1 522,539 - Xcc-8004.563.1 0.66 +1.1 522,539 - Xcc-8004.563.1 0.66 -0.2 522,539 - Xcc-8004.563.1 0.66 -1.4 522,539 - Xcc-8004.563.1 0.66 +0.0 522,539 - Xcc-8004.563.1 0.66 +0.4 522,543 - Xcc-8004.563.1 0.67 +0.3 522,543 - Xcc-8004.563.1 0.67 -1.4 522,543 - Xcc-8004.563.1 0.67 +1.9 522,543 - Xcc-8004.563.1 0.67 -0.8 522,543 - Xcc-8004.563.1 0.67 +0.9 522,560 + Xcc-8004.563.1 0.71 -1.5 522,561 - Xcc-8004.563.1 0.72 +0.0 522,561 - Xcc-8004.563.1 0.72 -1.1 522,561 - Xcc-8004.563.1 0.72 -1.1 522,565 + Xcc-8004.563.1 0.73 +0.7 522,565 + Xcc-8004.563.1 0.73 -1.3 522,566 - Xcc-8004.563.1 0.73 +0.6 522,566 - Xcc-8004.563.1 0.73 +0.6 522,566 - Xcc-8004.563.1 0.73 +0.3 522,566 - Xcc-8004.563.1 0.73 -0.7 522,569 + Xcc-8004.563.1 0.74 +0.6 522,605 - Xcc-8004.563.1 0.83 -0.4 522,605 - Xcc-8004.563.1 0.83 +2.5 522,605 - Xcc-8004.563.1 0.83 +0.2 522,608 - Xcc-8004.563.1 0.83 +3.5 522,624 + Xcc-8004.563.1 0.87 -0.9 522,626 + Xcc-8004.563.1 0.88 -1.0 522,627 - Xcc-8004.563.1 0.88 -0.7 522,627 - Xcc-8004.563.1 0.88 -0.1 522,635 + +0.2 522,635 + +0.1 522,646 - +0.9 522,740 + -1.1 522,740 + +0.3 522,760 + -0.5 522,760 + -0.7 522,760 + +1.5 522,761 - -1.0 522,762 + -1.6 522,762 + -2.3 522,763 - +0.1 522,804 + +0.3 522,804 + -0.9 522,805 - -0.7 522,967 + Xcc-8004.564.1 0.59 +0.8 523,001 - Xcc-8004.564.1 0.75 -2.6 523,017 - Xcc-8004.564.1 0.83 -0.4 523,017 - Xcc-8004.564.1 0.83 +0.1 523,044 + -0.5 523,232 + -1.5 523,232 + +0.8 523,233 - -0.7 523,233 - -2.0 523,344 + -0.2 523,344 + +1.9 523,344 + +0.3 523,345 - +0.8 523,453 + Xcc-8004.568.1 0.51 +0.0 523,453 + Xcc-8004.568.1 0.51 +0.6 523,453 + Xcc-8004.568.1 0.51 +0.3 523,453 + Xcc-8004.568.1 0.51 -0.2 523,453 + Xcc-8004.568.1 0.51 +0.0 523,453 + Xcc-8004.568.1 0.51 +0.3 523,453 + Xcc-8004.568.1 0.51 +0.9 523,453 + Xcc-8004.568.1 0.51 +0.0 523,453 + Xcc-8004.568.1 0.51 -1.7 523,453 + Xcc-8004.568.1 0.51 +0.1 523,454 - Xcc-8004.568.1 0.51 +0.1 523,454 - Xcc-8004.568.1 0.51 +0.6 523,454 - Xcc-8004.568.1 0.51 +0.4 523,454 - Xcc-8004.568.1 0.51 -0.7 523,454 - Xcc-8004.568.1 0.51 +0.5 523,454 - Xcc-8004.568.1 0.51 -1.1 523,454 - Xcc-8004.568.1 0.51 -0.7 523,454 - Xcc-8004.568.1 0.51 +0.9 523,454 - Xcc-8004.568.1 0.51 +0.1
Or see this region's nucleotide sequence