Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5135.1 and Xcc-8004.5136.1 are separated by 341 nucleotides Xcc-8004.5136.1 and Xcc-8004.5137.1 overlap by 19 nucleotides Xcc-8004.5137.1 and Xcc-8004.5138.1 are separated by 129 nucleotides
Xcc-8004.5135.1: Xcc-8004.5135.1 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 4,868,450 to 4,869,088
Xcc-8004.5135.1
Xcc-8004.5136.1: Xcc-8004.5136.1 - secreted alkaline phosphatase, at 4,869,430 to 4,871,022
Xcc-8004.5136.1
Xcc-8004.5137.1: Xcc-8004.5137.1 - 4'-phosphopantetheinyl transferase (EC 2.7.8.-), at 4,871,004 to 4,871,618
Xcc-8004.5137.1
Xcc-8004.5138.1: Xcc-8004.5138.1 - transglycosylase associated protein, at 4,871,748 to 4,871,999
Xcc-8004.5138.1
Position (kb) 4869
4870
4871
4872 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4868.641 kb on + strand, within Xcc-8004.5135.1 at 4868.642 kb on - strand, within Xcc-8004.5135.1 at 4868.880 kb on + strand, within Xcc-8004.5135.1 at 4868.880 kb on + strand, within Xcc-8004.5135.1 at 4868.880 kb on + strand, within Xcc-8004.5135.1 at 4868.880 kb on + strand, within Xcc-8004.5135.1 at 4868.880 kb on + strand, within Xcc-8004.5135.1 at 4868.880 kb on + strand, within Xcc-8004.5135.1 at 4868.881 kb on - strand, within Xcc-8004.5135.1 at 4868.881 kb on - strand, within Xcc-8004.5135.1 at 4868.881 kb on - strand, within Xcc-8004.5135.1 at 4868.955 kb on + strand, within Xcc-8004.5135.1 at 4868.956 kb on - strand, within Xcc-8004.5135.1 at 4868.956 kb on - strand, within Xcc-8004.5135.1 at 4868.956 kb on - strand, within Xcc-8004.5135.1 at 4868.956 kb on - strand, within Xcc-8004.5135.1 at 4868.956 kb on - strand, within Xcc-8004.5135.1 at 4868.988 kb on + strand, within Xcc-8004.5135.1 at 4868.989 kb on - strand, within Xcc-8004.5135.1 at 4868.989 kb on - strand, within Xcc-8004.5135.1 at 4869.188 kb on + strand at 4869.188 kb on + strand at 4869.189 kb on - strand at 4869.189 kb on - strand at 4869.189 kb on - strand at 4869.189 kb on - strand at 4869.238 kb on + strand at 4869.238 kb on + strand at 4869.238 kb on + strand at 4869.238 kb on + strand at 4869.239 kb on - strand at 4869.391 kb on + strand at 4869.391 kb on + strand at 4869.392 kb on - strand at 4869.392 kb on - strand at 4869.760 kb on + strand, within Xcc-8004.5136.1 at 4869.925 kb on + strand, within Xcc-8004.5136.1 at 4869.925 kb on + strand, within Xcc-8004.5136.1 at 4869.925 kb on + strand, within Xcc-8004.5136.1 at 4869.925 kb on + strand, within Xcc-8004.5136.1 at 4869.925 kb on + strand, within Xcc-8004.5136.1 at 4869.925 kb on + strand, within Xcc-8004.5136.1 at 4869.926 kb on - strand, within Xcc-8004.5136.1 at 4869.982 kb on + strand, within Xcc-8004.5136.1 at 4869.982 kb on + strand, within Xcc-8004.5136.1 at 4869.982 kb on + strand, within Xcc-8004.5136.1 at 4869.982 kb on + strand, within Xcc-8004.5136.1 at 4869.982 kb on + strand, within Xcc-8004.5136.1 at 4869.983 kb on - strand, within Xcc-8004.5136.1 at 4869.983 kb on - strand, within Xcc-8004.5136.1 at 4869.983 kb on - strand, within Xcc-8004.5136.1 at 4869.983 kb on - strand, within Xcc-8004.5136.1 at 4870.099 kb on + strand, within Xcc-8004.5136.1 at 4870.100 kb on - strand, within Xcc-8004.5136.1 at 4870.100 kb on - strand, within Xcc-8004.5136.1 at 4870.105 kb on + strand, within Xcc-8004.5136.1 at 4870.105 kb on + strand, within Xcc-8004.5136.1 at 4870.105 kb on + strand, within Xcc-8004.5136.1 at 4870.222 kb on + strand, within Xcc-8004.5136.1 at 4870.222 kb on + strand, within Xcc-8004.5136.1 at 4870.279 kb on + strand, within Xcc-8004.5136.1 at 4870.279 kb on + strand, within Xcc-8004.5136.1 at 4870.279 kb on + strand, within Xcc-8004.5136.1 at 4870.280 kb on - strand, within Xcc-8004.5136.1 at 4870.280 kb on - strand, within Xcc-8004.5136.1 at 4870.324 kb on + strand, within Xcc-8004.5136.1 at 4870.324 kb on + strand, within Xcc-8004.5136.1 at 4870.324 kb on + strand, within Xcc-8004.5136.1 at 4870.325 kb on - strand, within Xcc-8004.5136.1 at 4870.339 kb on + strand, within Xcc-8004.5136.1 at 4870.339 kb on + strand, within Xcc-8004.5136.1 at 4870.339 kb on + strand, within Xcc-8004.5136.1 at 4870.340 kb on - strand, within Xcc-8004.5136.1 at 4870.340 kb on - strand, within Xcc-8004.5136.1 at 4870.340 kb on - strand, within Xcc-8004.5136.1 at 4870.340 kb on - strand, within Xcc-8004.5136.1 at 4870.377 kb on + strand, within Xcc-8004.5136.1 at 4870.377 kb on + strand, within Xcc-8004.5136.1 at 4870.377 kb on + strand, within Xcc-8004.5136.1 at 4870.377 kb on + strand, within Xcc-8004.5136.1 at 4870.377 kb on + strand, within Xcc-8004.5136.1 at 4870.377 kb on + strand, within Xcc-8004.5136.1 at 4870.377 kb on + strand, within Xcc-8004.5136.1 at 4870.377 kb on + strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.378 kb on - strand, within Xcc-8004.5136.1 at 4870.381 kb on + strand, within Xcc-8004.5136.1 at 4870.382 kb on - strand, within Xcc-8004.5136.1 at 4870.668 kb on + strand, within Xcc-8004.5136.1 at 4870.668 kb on + strand, within Xcc-8004.5136.1 at 4870.669 kb on - strand, within Xcc-8004.5136.1 at 4870.669 kb on - strand, within Xcc-8004.5136.1 at 4870.669 kb on - strand, within Xcc-8004.5136.1 at 4870.669 kb on - strand, within Xcc-8004.5136.1 at 4870.696 kb on + strand, within Xcc-8004.5136.1 at 4870.696 kb on + strand, within Xcc-8004.5136.1 at 4870.696 kb on + strand, within Xcc-8004.5136.1 at 4870.697 kb on - strand, within Xcc-8004.5136.1 at 4870.697 kb on - strand, within Xcc-8004.5136.1 at 4870.711 kb on + strand, within Xcc-8004.5136.1 at 4870.711 kb on + strand, within Xcc-8004.5136.1 at 4870.711 kb on + strand, within Xcc-8004.5136.1 at 4870.711 kb on + strand, within Xcc-8004.5136.1 at 4870.712 kb on - strand, within Xcc-8004.5136.1 at 4870.712 kb on - strand, within Xcc-8004.5136.1 at 4870.712 kb on - strand, within Xcc-8004.5136.1 at 4870.712 kb on - strand, within Xcc-8004.5136.1 at 4870.714 kb on + strand, within Xcc-8004.5136.1 at 4870.714 kb on + strand, within Xcc-8004.5136.1 at 4870.714 kb on + strand, within Xcc-8004.5136.1 at 4870.714 kb on + strand, within Xcc-8004.5136.1 at 4870.714 kb on + strand, within Xcc-8004.5136.1 at 4870.714 kb on + strand, within Xcc-8004.5136.1 at 4870.715 kb on - strand, within Xcc-8004.5136.1 at 4870.715 kb on - strand, within Xcc-8004.5136.1 at 4870.715 kb on - strand, within Xcc-8004.5136.1 at 4870.715 kb on - strand, within Xcc-8004.5136.1 at 4871.845 kb on + strand, within Xcc-8004.5138.1 at 4871.845 kb on + strand, within Xcc-8004.5138.1 at 4871.845 kb on + strand, within Xcc-8004.5138.1 at 4871.845 kb on + strand, within Xcc-8004.5138.1 at 4871.845 kb on + strand, within Xcc-8004.5138.1 at 4871.845 kb on + strand, within Xcc-8004.5138.1 at 4871.845 kb on + strand, within Xcc-8004.5138.1 at 4871.845 kb on + strand, within Xcc-8004.5138.1 at 4871.845 kb on + strand, within Xcc-8004.5138.1 at 4871.846 kb on - strand, within Xcc-8004.5138.1 at 4871.846 kb on - strand, within Xcc-8004.5138.1 at 4871.846 kb on - strand, within Xcc-8004.5138.1 at 4871.846 kb on - strand, within Xcc-8004.5138.1 at 4871.846 kb on - strand, within Xcc-8004.5138.1 at 4871.846 kb on - strand, within Xcc-8004.5138.1 at 4871.846 kb on - strand, within Xcc-8004.5138.1 at 4871.978 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 4,868,641 + Xcc-8004.5135.1 0.30 +1.6 4,868,642 - Xcc-8004.5135.1 0.30 -0.3 4,868,880 + Xcc-8004.5135.1 0.67 -1.3 4,868,880 + Xcc-8004.5135.1 0.67 +2.0 4,868,880 + Xcc-8004.5135.1 0.67 -1.3 4,868,880 + Xcc-8004.5135.1 0.67 -0.0 4,868,880 + Xcc-8004.5135.1 0.67 +1.0 4,868,880 + Xcc-8004.5135.1 0.67 -1.3 4,868,881 - Xcc-8004.5135.1 0.67 +1.3 4,868,881 - Xcc-8004.5135.1 0.67 -2.0 4,868,881 - Xcc-8004.5135.1 0.67 -0.1 4,868,955 + Xcc-8004.5135.1 0.79 -1.0 4,868,956 - Xcc-8004.5135.1 0.79 +1.2 4,868,956 - Xcc-8004.5135.1 0.79 -0.0 4,868,956 - Xcc-8004.5135.1 0.79 -0.6 4,868,956 - Xcc-8004.5135.1 0.79 +1.6 4,868,956 - Xcc-8004.5135.1 0.79 -1.0 4,868,988 + Xcc-8004.5135.1 0.84 -0.0 4,868,989 - Xcc-8004.5135.1 0.84 -0.3 4,868,989 - Xcc-8004.5135.1 0.84 -0.0 4,869,188 + +0.8 4,869,188 + -0.8 4,869,189 - +0.4 4,869,189 - +0.2 4,869,189 - -0.9 4,869,189 - +0.2 4,869,238 + +0.6 4,869,238 + +1.5 4,869,238 + -0.1 4,869,238 + -0.6 4,869,239 - +0.4 4,869,391 + +0.9 4,869,391 + -0.6 4,869,392 - +0.2 4,869,392 - -0.3 4,869,760 + Xcc-8004.5136.1 0.21 +0.7 4,869,925 + Xcc-8004.5136.1 0.31 -1.2 4,869,925 + Xcc-8004.5136.1 0.31 -0.6 4,869,925 + Xcc-8004.5136.1 0.31 +0.5 4,869,925 + Xcc-8004.5136.1 0.31 +1.4 4,869,925 + Xcc-8004.5136.1 0.31 +0.6 4,869,925 + Xcc-8004.5136.1 0.31 -1.6 4,869,926 - Xcc-8004.5136.1 0.31 -0.6 4,869,982 + Xcc-8004.5136.1 0.35 +0.5 4,869,982 + Xcc-8004.5136.1 0.35 +0.3 4,869,982 + Xcc-8004.5136.1 0.35 +2.3 4,869,982 + Xcc-8004.5136.1 0.35 +0.5 4,869,982 + Xcc-8004.5136.1 0.35 -1.3 4,869,983 - Xcc-8004.5136.1 0.35 +4.4 4,869,983 - Xcc-8004.5136.1 0.35 +0.3 4,869,983 - Xcc-8004.5136.1 0.35 +0.3 4,869,983 - Xcc-8004.5136.1 0.35 +2.3 4,870,099 + Xcc-8004.5136.1 0.42 -0.2 4,870,100 - Xcc-8004.5136.1 0.42 +0.1 4,870,100 - Xcc-8004.5136.1 0.42 +0.2 4,870,105 + Xcc-8004.5136.1 0.42 +0.2 4,870,105 + Xcc-8004.5136.1 0.42 -0.9 4,870,105 + Xcc-8004.5136.1 0.42 +0.3 4,870,222 + Xcc-8004.5136.1 0.50 +2.2 4,870,222 + Xcc-8004.5136.1 0.50 +0.7 4,870,279 + Xcc-8004.5136.1 0.53 +0.7 4,870,279 + Xcc-8004.5136.1 0.53 +0.9 4,870,279 + Xcc-8004.5136.1 0.53 +1.6 4,870,280 - Xcc-8004.5136.1 0.53 -0.4 4,870,280 - Xcc-8004.5136.1 0.53 -0.5 4,870,324 + Xcc-8004.5136.1 0.56 -0.7 4,870,324 + Xcc-8004.5136.1 0.56 -0.6 4,870,324 + Xcc-8004.5136.1 0.56 +0.1 4,870,325 - Xcc-8004.5136.1 0.56 -0.6 4,870,339 + Xcc-8004.5136.1 0.57 -0.2 4,870,339 + Xcc-8004.5136.1 0.57 -0.9 4,870,339 + Xcc-8004.5136.1 0.57 +0.9 4,870,340 - Xcc-8004.5136.1 0.57 +0.1 4,870,340 - Xcc-8004.5136.1 0.57 +0.1 4,870,340 - Xcc-8004.5136.1 0.57 +1.2 4,870,340 - Xcc-8004.5136.1 0.57 +0.5 4,870,377 + Xcc-8004.5136.1 0.59 +0.9 4,870,377 + Xcc-8004.5136.1 0.59 +0.3 4,870,377 + Xcc-8004.5136.1 0.59 -0.2 4,870,377 + Xcc-8004.5136.1 0.59 +0.6 4,870,377 + Xcc-8004.5136.1 0.59 -0.8 4,870,377 + Xcc-8004.5136.1 0.59 -0.7 4,870,377 + Xcc-8004.5136.1 0.59 -0.8 4,870,377 + Xcc-8004.5136.1 0.59 +0.6 4,870,378 - Xcc-8004.5136.1 0.60 +0.4 4,870,378 - Xcc-8004.5136.1 0.60 +0.0 4,870,378 - Xcc-8004.5136.1 0.60 +0.3 4,870,378 - Xcc-8004.5136.1 0.60 -0.0 4,870,378 - Xcc-8004.5136.1 0.60 -0.3 4,870,378 - Xcc-8004.5136.1 0.60 -0.0 4,870,378 - Xcc-8004.5136.1 0.60 +1.7 4,870,378 - Xcc-8004.5136.1 0.60 -3.1 4,870,378 - Xcc-8004.5136.1 0.60 +0.5 4,870,378 - Xcc-8004.5136.1 0.60 -1.5 4,870,378 - Xcc-8004.5136.1 0.60 -0.2 4,870,381 + Xcc-8004.5136.1 0.60 +1.0 4,870,382 - Xcc-8004.5136.1 0.60 +1.0 4,870,668 + Xcc-8004.5136.1 0.78 +1.6 4,870,668 + Xcc-8004.5136.1 0.78 +1.7 4,870,669 - Xcc-8004.5136.1 0.78 -0.1 4,870,669 - Xcc-8004.5136.1 0.78 +1.0 4,870,669 - Xcc-8004.5136.1 0.78 +1.2 4,870,669 - Xcc-8004.5136.1 0.78 -0.0 4,870,696 + Xcc-8004.5136.1 0.79 -0.3 4,870,696 + Xcc-8004.5136.1 0.79 +0.3 4,870,696 + Xcc-8004.5136.1 0.79 +0.9 4,870,697 - Xcc-8004.5136.1 0.80 -0.2 4,870,697 - Xcc-8004.5136.1 0.80 +1.0 4,870,711 + Xcc-8004.5136.1 0.80 -0.8 4,870,711 + Xcc-8004.5136.1 0.80 +0.7 4,870,711 + Xcc-8004.5136.1 0.80 +0.5 4,870,711 + Xcc-8004.5136.1 0.80 +1.0 4,870,712 - Xcc-8004.5136.1 0.80 +0.1 4,870,712 - Xcc-8004.5136.1 0.80 +0.6 4,870,712 - Xcc-8004.5136.1 0.80 +0.3 4,870,712 - Xcc-8004.5136.1 0.80 +1.0 4,870,714 + Xcc-8004.5136.1 0.81 +0.4 4,870,714 + Xcc-8004.5136.1 0.81 +0.2 4,870,714 + Xcc-8004.5136.1 0.81 -1.0 4,870,714 + Xcc-8004.5136.1 0.81 +1.3 4,870,714 + Xcc-8004.5136.1 0.81 +1.2 4,870,714 + Xcc-8004.5136.1 0.81 -0.7 4,870,715 - Xcc-8004.5136.1 0.81 -0.3 4,870,715 - Xcc-8004.5136.1 0.81 +0.7 4,870,715 - Xcc-8004.5136.1 0.81 +0.2 4,870,715 - Xcc-8004.5136.1 0.81 -0.3 4,871,845 + Xcc-8004.5138.1 0.38 +1.7 4,871,845 + Xcc-8004.5138.1 0.38 +0.1 4,871,845 + Xcc-8004.5138.1 0.38 -0.2 4,871,845 + Xcc-8004.5138.1 0.38 -0.6 4,871,845 + Xcc-8004.5138.1 0.38 -0.8 4,871,845 + Xcc-8004.5138.1 0.38 +0.7 4,871,845 + Xcc-8004.5138.1 0.38 +0.1 4,871,845 + Xcc-8004.5138.1 0.38 -0.4 4,871,845 + Xcc-8004.5138.1 0.38 +0.5 4,871,846 - Xcc-8004.5138.1 0.39 -0.7 4,871,846 - Xcc-8004.5138.1 0.39 +0.3 4,871,846 - Xcc-8004.5138.1 0.39 -0.3 4,871,846 - Xcc-8004.5138.1 0.39 -0.5 4,871,846 - Xcc-8004.5138.1 0.39 -0.2 4,871,846 - Xcc-8004.5138.1 0.39 +1.0 4,871,846 - Xcc-8004.5138.1 0.39 +1.0 4,871,978 + +1.0
Or see this region's nucleotide sequence