Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4693.1 and Xcc-8004.4694.1 are separated by 123 nucleotides Xcc-8004.4694.1 and Xcc-8004.4695.1 are separated by 597 nucleotides Xcc-8004.4695.1 and Xcc-8004.4697.1 are separated by 534 nucleotides
Xcc-8004.4693.1: Xcc-8004.4693.1 - hypothetical protein, at 4,468,436 to 4,468,852
Xcc-8004.4693.1
Xcc-8004.4694.1: Xcc-8004.4694.1 - FIG01210824: hypothetical protein, at 4,468,976 to 4,469,188
Xcc-8004.4694.1
Xcc-8004.4695.1: Xcc-8004.4695.1 - Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR, at 4,469,786 to 4,471,999
Xcc-8004.4695.1
Xcc-8004.4697.1: Xcc-8004.4697.1 - FIG01210654: hypothetical protein, at 4,472,534 to 4,473,268
Xcc-8004.4697.1
Position (kb) 4469
4470
4471
4472 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4468.868 kb on + strand at 4468.868 kb on + strand at 4468.868 kb on + strand at 4468.869 kb on - strand at 4468.946 kb on + strand at 4468.947 kb on - strand at 4468.977 kb on + strand at 4468.978 kb on - strand at 4468.978 kb on - strand at 4469.091 kb on + strand, within Xcc-8004.4694.1 at 4469.091 kb on + strand, within Xcc-8004.4694.1 at 4469.092 kb on - strand, within Xcc-8004.4694.1 at 4469.092 kb on - strand, within Xcc-8004.4694.1 at 4469.122 kb on - strand, within Xcc-8004.4694.1 at 4469.195 kb on + strand at 4469.196 kb on - strand at 4469.196 kb on - strand at 4469.228 kb on + strand at 4469.228 kb on + strand at 4469.228 kb on + strand at 4469.228 kb on + strand at 4469.229 kb on - strand at 4469.229 kb on - strand at 4469.229 kb on - strand at 4469.229 kb on - strand at 4469.229 kb on - strand at 4469.229 kb on - strand at 4469.229 kb on - strand at 4469.230 kb on + strand at 4469.231 kb on - strand at 4469.292 kb on - strand at 4469.406 kb on + strand at 4469.489 kb on + strand at 4469.489 kb on + strand at 4469.490 kb on - strand at 4469.507 kb on + strand at 4469.529 kb on + strand at 4469.530 kb on - strand at 4469.537 kb on + strand at 4469.537 kb on + strand at 4469.537 kb on + strand at 4469.538 kb on - strand at 4469.538 kb on - strand at 4469.614 kb on + strand at 4469.614 kb on + strand at 4469.614 kb on + strand at 4469.614 kb on + strand at 4469.614 kb on + strand at 4469.614 kb on + strand at 4469.615 kb on - strand at 4469.615 kb on - strand at 4469.615 kb on - strand at 4469.615 kb on - strand at 4469.615 kb on - strand at 4469.615 kb on - strand at 4469.615 kb on - strand at 4469.641 kb on + strand at 4469.642 kb on - strand at 4469.831 kb on - strand at 4469.868 kb on + strand at 4469.868 kb on + strand at 4469.869 kb on - strand at 4470.012 kb on + strand, within Xcc-8004.4695.1 at 4470.246 kb on + strand, within Xcc-8004.4695.1 at 4470.247 kb on - strand, within Xcc-8004.4695.1 at 4470.247 kb on - strand, within Xcc-8004.4695.1 at 4470.429 kb on + strand, within Xcc-8004.4695.1 at 4470.429 kb on + strand, within Xcc-8004.4695.1 at 4470.430 kb on - strand, within Xcc-8004.4695.1 at 4470.430 kb on - strand, within Xcc-8004.4695.1 at 4470.570 kb on + strand, within Xcc-8004.4695.1 at 4470.570 kb on + strand, within Xcc-8004.4695.1 at 4470.570 kb on + strand, within Xcc-8004.4695.1 at 4470.570 kb on + strand, within Xcc-8004.4695.1 at 4470.571 kb on - strand, within Xcc-8004.4695.1 at 4470.571 kb on - strand, within Xcc-8004.4695.1 at 4470.571 kb on - strand, within Xcc-8004.4695.1 at 4470.571 kb on - strand, within Xcc-8004.4695.1 at 4471.008 kb on + strand, within Xcc-8004.4695.1 at 4471.009 kb on - strand, within Xcc-8004.4695.1 at 4471.482 kb on + strand, within Xcc-8004.4695.1 at 4471.483 kb on - strand, within Xcc-8004.4695.1 at 4471.483 kb on - strand, within Xcc-8004.4695.1 at 4471.578 kb on + strand, within Xcc-8004.4695.1 at 4471.578 kb on + strand, within Xcc-8004.4695.1 at 4471.579 kb on - strand, within Xcc-8004.4695.1 at 4471.579 kb on - strand, within Xcc-8004.4695.1 at 4471.677 kb on + strand, within Xcc-8004.4695.1 at 4471.677 kb on + strand, within Xcc-8004.4695.1 at 4471.678 kb on - strand, within Xcc-8004.4695.1 at 4471.678 kb on - strand, within Xcc-8004.4695.1 at 4471.678 kb on - strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.716 kb on + strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.717 kb on - strand, within Xcc-8004.4695.1 at 4471.845 kb on + strand at 4471.846 kb on - strand at 4471.846 kb on - strand at 4471.846 kb on - strand at 4471.884 kb on + strand at 4471.884 kb on + strand at 4471.884 kb on + strand at 4471.884 kb on + strand at 4471.885 kb on - strand at 4471.885 kb on - strand at 4471.885 kb on - strand at 4471.890 kb on + strand at 4471.891 kb on - strand at 4472.138 kb on + strand at 4472.507 kb on + strand at 4472.879 kb on + strand, within Xcc-8004.4697.1 at 4472.879 kb on + strand, within Xcc-8004.4697.1 at 4472.900 kb on + strand, within Xcc-8004.4697.1 at 4472.901 kb on - strand, within Xcc-8004.4697.1 at 4472.901 kb on - strand, within Xcc-8004.4697.1 at 4472.901 kb on - strand, within Xcc-8004.4697.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 4,468,868 + -1.7 4,468,868 + -0.1 4,468,868 + +0.3 4,468,869 - +0.9 4,468,946 + +0.2 4,468,947 - +0.3 4,468,977 + -0.1 4,468,978 - +0.2 4,468,978 - -2.7 4,469,091 + Xcc-8004.4694.1 0.54 +1.9 4,469,091 + Xcc-8004.4694.1 0.54 +0.3 4,469,092 - Xcc-8004.4694.1 0.54 -1.0 4,469,092 - Xcc-8004.4694.1 0.54 -1.1 4,469,122 - Xcc-8004.4694.1 0.69 +0.2 4,469,195 + +1.7 4,469,196 - +0.8 4,469,196 - +0.7 4,469,228 + -0.8 4,469,228 + -1.2 4,469,228 + +0.0 4,469,228 + +2.0 4,469,229 - -0.1 4,469,229 - -0.7 4,469,229 - -0.6 4,469,229 - -1.1 4,469,229 - +1.2 4,469,229 - +0.4 4,469,229 - -0.4 4,469,230 + +0.9 4,469,231 - -1.2 4,469,292 - +0.6 4,469,406 + +0.9 4,469,489 + -0.4 4,469,489 + +1.2 4,469,490 - -0.4 4,469,507 + -1.1 4,469,529 + +1.1 4,469,530 - +0.9 4,469,537 + +0.6 4,469,537 + +0.5 4,469,537 + -0.4 4,469,538 - -0.2 4,469,538 - -0.2 4,469,614 + -0.4 4,469,614 + +0.4 4,469,614 + +0.0 4,469,614 + -1.0 4,469,614 + -1.1 4,469,614 + -0.9 4,469,615 - -1.1 4,469,615 - +0.4 4,469,615 - -0.7 4,469,615 - -0.5 4,469,615 - -0.1 4,469,615 - +0.7 4,469,615 - +0.1 4,469,641 + +0.6 4,469,642 - -0.2 4,469,831 - +0.5 4,469,868 + +1.7 4,469,868 + +2.3 4,469,869 - -0.8 4,470,012 + Xcc-8004.4695.1 0.10 -0.8 4,470,246 + Xcc-8004.4695.1 0.21 +0.1 4,470,247 - Xcc-8004.4695.1 0.21 +0.5 4,470,247 - Xcc-8004.4695.1 0.21 -0.1 4,470,429 + Xcc-8004.4695.1 0.29 -0.7 4,470,429 + Xcc-8004.4695.1 0.29 -0.1 4,470,430 - Xcc-8004.4695.1 0.29 -0.4 4,470,430 - Xcc-8004.4695.1 0.29 -1.5 4,470,570 + Xcc-8004.4695.1 0.35 +0.3 4,470,570 + Xcc-8004.4695.1 0.35 +0.9 4,470,570 + Xcc-8004.4695.1 0.35 +1.9 4,470,570 + Xcc-8004.4695.1 0.35 +0.9 4,470,571 - Xcc-8004.4695.1 0.35 +0.4 4,470,571 - Xcc-8004.4695.1 0.35 +0.5 4,470,571 - Xcc-8004.4695.1 0.35 +0.6 4,470,571 - Xcc-8004.4695.1 0.35 +0.3 4,471,008 + Xcc-8004.4695.1 0.55 +1.2 4,471,009 - Xcc-8004.4695.1 0.55 -0.3 4,471,482 + Xcc-8004.4695.1 0.77 -0.1 4,471,483 - Xcc-8004.4695.1 0.77 -1.1 4,471,483 - Xcc-8004.4695.1 0.77 +0.2 4,471,578 + Xcc-8004.4695.1 0.81 +0.3 4,471,578 + Xcc-8004.4695.1 0.81 +0.6 4,471,579 - Xcc-8004.4695.1 0.81 -2.2 4,471,579 - Xcc-8004.4695.1 0.81 +0.9 4,471,677 + Xcc-8004.4695.1 0.85 -0.6 4,471,677 + Xcc-8004.4695.1 0.85 -0.8 4,471,678 - Xcc-8004.4695.1 0.85 -0.2 4,471,678 - Xcc-8004.4695.1 0.85 -0.8 4,471,678 - Xcc-8004.4695.1 0.85 +0.6 4,471,716 + Xcc-8004.4695.1 0.87 +0.3 4,471,716 + Xcc-8004.4695.1 0.87 -1.1 4,471,716 + Xcc-8004.4695.1 0.87 +0.3 4,471,716 + Xcc-8004.4695.1 0.87 +0.6 4,471,716 + Xcc-8004.4695.1 0.87 -1.4 4,471,716 + Xcc-8004.4695.1 0.87 -0.1 4,471,716 + Xcc-8004.4695.1 0.87 -0.4 4,471,716 + Xcc-8004.4695.1 0.87 +1.7 4,471,716 + Xcc-8004.4695.1 0.87 -0.2 4,471,716 + Xcc-8004.4695.1 0.87 -1.4 4,471,716 + Xcc-8004.4695.1 0.87 +0.9 4,471,716 + Xcc-8004.4695.1 0.87 +0.2 4,471,717 - Xcc-8004.4695.1 0.87 +0.3 4,471,717 - Xcc-8004.4695.1 0.87 +0.6 4,471,717 - Xcc-8004.4695.1 0.87 -0.9 4,471,717 - Xcc-8004.4695.1 0.87 +0.8 4,471,717 - Xcc-8004.4695.1 0.87 -0.1 4,471,717 - Xcc-8004.4695.1 0.87 +0.6 4,471,717 - Xcc-8004.4695.1 0.87 +0.8 4,471,717 - Xcc-8004.4695.1 0.87 -0.1 4,471,717 - Xcc-8004.4695.1 0.87 +0.5 4,471,717 - Xcc-8004.4695.1 0.87 +0.5 4,471,717 - Xcc-8004.4695.1 0.87 -0.1 4,471,717 - Xcc-8004.4695.1 0.87 +2.1 4,471,717 - Xcc-8004.4695.1 0.87 +0.8 4,471,717 - Xcc-8004.4695.1 0.87 +0.2 4,471,845 + -0.4 4,471,846 - -0.7 4,471,846 - -1.4 4,471,846 - -1.0 4,471,884 + +1.7 4,471,884 + -0.8 4,471,884 + -0.4 4,471,884 + -0.2 4,471,885 - -0.5 4,471,885 - +0.3 4,471,885 - -1.0 4,471,890 + -0.1 4,471,891 - -0.3 4,472,138 + +0.3 4,472,507 + +0.3 4,472,879 + Xcc-8004.4697.1 0.47 -1.7 4,472,879 + Xcc-8004.4697.1 0.47 -0.3 4,472,900 + Xcc-8004.4697.1 0.50 -1.9 4,472,901 - Xcc-8004.4697.1 0.50 -2.1 4,472,901 - Xcc-8004.4697.1 0.50 +0.9 4,472,901 - Xcc-8004.4697.1 0.50 -0.1
Or see this region's nucleotide sequence