Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4486.1 and Xcc-8004.4487.1 are separated by 228 nucleotides Xcc-8004.4487.1 and Xcc-8004.4488.1 overlap by 1 nucleotides
Xcc-8004.4486.1: Xcc-8004.4486.1 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 4,294,356 to 4,295,411
Xcc-8004.4486.1
Xcc-8004.4487.1: Xcc-8004.4487.1 - Electron transfer flavoprotein, beta subunit, at 4,295,640 to 4,296,386
Xcc-8004.4487.1
Xcc-8004.4488.1: Xcc-8004.4488.1 - Electron transfer flavoprotein, alpha subunit, at 4,296,386 to 4,297,330
Xcc-8004.4488.1
Position (kb) 4295
4296
4297 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.673 kb on - strand, within Xcc-8004.4486.1 at 4294.673 kb on - strand, within Xcc-8004.4486.1 at 4294.673 kb on - strand, within Xcc-8004.4486.1 at 4294.768 kb on + strand, within Xcc-8004.4486.1 at 4294.769 kb on - strand, within Xcc-8004.4486.1 at 4294.769 kb on - strand, within Xcc-8004.4486.1 at 4294.769 kb on - strand, within Xcc-8004.4486.1 at 4294.769 kb on - strand, within Xcc-8004.4486.1 at 4294.837 kb on + strand, within Xcc-8004.4486.1 at 4294.837 kb on + strand, within Xcc-8004.4486.1 at 4294.838 kb on - strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.885 kb on + strand, within Xcc-8004.4486.1 at 4294.885 kb on + strand, within Xcc-8004.4486.1 at 4294.885 kb on + strand, within Xcc-8004.4486.1 at 4294.885 kb on + strand, within Xcc-8004.4486.1 at 4294.885 kb on + strand, within Xcc-8004.4486.1 at 4294.886 kb on - strand, within Xcc-8004.4486.1 at 4294.886 kb on - strand, within Xcc-8004.4486.1 at 4294.886 kb on - strand, within Xcc-8004.4486.1 at 4294.886 kb on - strand, within Xcc-8004.4486.1 at 4294.957 kb on + strand, within Xcc-8004.4486.1 at 4294.958 kb on - strand, within Xcc-8004.4486.1 at 4295.002 kb on + strand, within Xcc-8004.4486.1 at 4295.002 kb on + strand, within Xcc-8004.4486.1 at 4295.002 kb on + strand, within Xcc-8004.4486.1 at 4295.002 kb on + strand, within Xcc-8004.4486.1 at 4295.003 kb on - strand, within Xcc-8004.4486.1 at 4295.003 kb on - strand, within Xcc-8004.4486.1 at 4295.003 kb on - strand, within Xcc-8004.4486.1 at 4295.071 kb on + strand, within Xcc-8004.4486.1 at 4295.255 kb on + strand, within Xcc-8004.4486.1 at 4295.255 kb on + strand, within Xcc-8004.4486.1 at 4295.255 kb on + strand, within Xcc-8004.4486.1 at 4295.255 kb on + strand, within Xcc-8004.4486.1 at 4295.255 kb on + strand, within Xcc-8004.4486.1 at 4295.256 kb on - strand, within Xcc-8004.4486.1 at 4295.256 kb on - strand, within Xcc-8004.4486.1 at 4295.256 kb on - strand, within Xcc-8004.4486.1 at 4295.256 kb on - strand, within Xcc-8004.4486.1 at 4295.256 kb on - strand, within Xcc-8004.4486.1 at 4295.288 kb on + strand, within Xcc-8004.4486.1 at 4295.289 kb on - strand, within Xcc-8004.4486.1 at 4295.289 kb on - strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.306 kb on - strand at 4295.306 kb on - strand at 4295.306 kb on - strand at 4295.306 kb on - strand at 4295.306 kb on - strand at 4295.397 kb on + strand at 4295.397 kb on + strand at 4295.397 kb on + strand at 4295.398 kb on - strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.618 kb on + strand at 4295.618 kb on + strand at 4295.618 kb on + strand at 4295.618 kb on + strand at 4295.634 kb on + strand at 4297.352 kb on + strand at 4297.352 kb on + strand at 4297.353 kb on - strand at 4297.353 kb on - strand at 4297.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 4,294,672 + Xcc-8004.4486.1 0.30 -1.0 4,294,672 + Xcc-8004.4486.1 0.30 -0.3 4,294,672 + Xcc-8004.4486.1 0.30 -2.6 4,294,672 + Xcc-8004.4486.1 0.30 -1.6 4,294,672 + Xcc-8004.4486.1 0.30 -0.3 4,294,672 + Xcc-8004.4486.1 0.30 -0.6 4,294,673 - Xcc-8004.4486.1 0.30 -1.6 4,294,673 - Xcc-8004.4486.1 0.30 -1.1 4,294,673 - Xcc-8004.4486.1 0.30 -1.0 4,294,768 + Xcc-8004.4486.1 0.39 -1.6 4,294,769 - Xcc-8004.4486.1 0.39 +0.3 4,294,769 - Xcc-8004.4486.1 0.39 -0.6 4,294,769 - Xcc-8004.4486.1 0.39 +0.3 4,294,769 - Xcc-8004.4486.1 0.39 -1.5 4,294,837 + Xcc-8004.4486.1 0.46 -3.0 4,294,837 + Xcc-8004.4486.1 0.46 -0.9 4,294,838 - Xcc-8004.4486.1 0.46 +0.4 4,294,846 + Xcc-8004.4486.1 0.46 -0.4 4,294,846 + Xcc-8004.4486.1 0.46 -1.3 4,294,846 + Xcc-8004.4486.1 0.46 -0.5 4,294,846 + Xcc-8004.4486.1 0.46 -0.5 4,294,846 + Xcc-8004.4486.1 0.46 +0.5 4,294,846 + Xcc-8004.4486.1 0.46 +1.0 4,294,846 + Xcc-8004.4486.1 0.46 -1.6 4,294,846 + Xcc-8004.4486.1 0.46 -2.2 4,294,846 + Xcc-8004.4486.1 0.46 +0.4 4,294,846 + Xcc-8004.4486.1 0.46 -1.0 4,294,846 + Xcc-8004.4486.1 0.46 +0.1 4,294,846 + Xcc-8004.4486.1 0.46 +0.4 4,294,846 + Xcc-8004.4486.1 0.46 -0.6 4,294,847 - Xcc-8004.4486.1 0.46 -0.3 4,294,847 - Xcc-8004.4486.1 0.46 -0.7 4,294,847 - Xcc-8004.4486.1 0.46 -1.0 4,294,847 - Xcc-8004.4486.1 0.46 -1.5 4,294,847 - Xcc-8004.4486.1 0.46 -1.0 4,294,847 - Xcc-8004.4486.1 0.46 -0.3 4,294,885 + Xcc-8004.4486.1 0.50 -1.3 4,294,885 + Xcc-8004.4486.1 0.50 -0.9 4,294,885 + Xcc-8004.4486.1 0.50 -0.4 4,294,885 + Xcc-8004.4486.1 0.50 -1.3 4,294,885 + Xcc-8004.4486.1 0.50 -0.9 4,294,886 - Xcc-8004.4486.1 0.50 -0.9 4,294,886 - Xcc-8004.4486.1 0.50 -0.9 4,294,886 - Xcc-8004.4486.1 0.50 +0.4 4,294,886 - Xcc-8004.4486.1 0.50 -1.6 4,294,957 + Xcc-8004.4486.1 0.57 -0.2 4,294,958 - Xcc-8004.4486.1 0.57 +0.2 4,295,002 + Xcc-8004.4486.1 0.61 -0.0 4,295,002 + Xcc-8004.4486.1 0.61 -0.6 4,295,002 + Xcc-8004.4486.1 0.61 +0.1 4,295,002 + Xcc-8004.4486.1 0.61 -1.5 4,295,003 - Xcc-8004.4486.1 0.61 -2.4 4,295,003 - Xcc-8004.4486.1 0.61 -0.4 4,295,003 - Xcc-8004.4486.1 0.61 -0.7 4,295,071 + Xcc-8004.4486.1 0.68 -2.9 4,295,255 + Xcc-8004.4486.1 0.85 -1.8 4,295,255 + Xcc-8004.4486.1 0.85 -3.1 4,295,255 + Xcc-8004.4486.1 0.85 -0.6 4,295,255 + Xcc-8004.4486.1 0.85 -1.4 4,295,255 + Xcc-8004.4486.1 0.85 -0.0 4,295,256 - Xcc-8004.4486.1 0.85 -1.1 4,295,256 - Xcc-8004.4486.1 0.85 -1.6 4,295,256 - Xcc-8004.4486.1 0.85 -0.3 4,295,256 - Xcc-8004.4486.1 0.85 -1.5 4,295,256 - Xcc-8004.4486.1 0.85 -0.0 4,295,288 + Xcc-8004.4486.1 0.88 -2.0 4,295,289 - Xcc-8004.4486.1 0.88 -1.2 4,295,289 - Xcc-8004.4486.1 0.88 -3.0 4,295,305 + Xcc-8004.4486.1 0.90 -1.5 4,295,305 + Xcc-8004.4486.1 0.90 -0.9 4,295,305 + Xcc-8004.4486.1 0.90 -1.4 4,295,305 + Xcc-8004.4486.1 0.90 -1.6 4,295,305 + Xcc-8004.4486.1 0.90 -0.9 4,295,305 + Xcc-8004.4486.1 0.90 -0.9 4,295,306 - -0.3 4,295,306 - -2.3 4,295,306 - -1.5 4,295,306 - -1.0 4,295,306 - -0.6 4,295,397 + -3.3 4,295,397 + +1.0 4,295,397 + -1.4 4,295,398 - +0.3 4,295,412 + -0.0 4,295,412 + -0.0 4,295,412 + -0.2 4,295,412 + -0.4 4,295,412 + -1.6 4,295,412 + -1.7 4,295,412 + -1.2 4,295,413 - -1.0 4,295,413 - -0.5 4,295,413 - +0.2 4,295,413 - -0.8 4,295,413 - -2.6 4,295,413 - -0.9 4,295,413 - -0.9 4,295,413 - -1.4 4,295,416 + -1.8 4,295,416 + -0.4 4,295,416 + -1.4 4,295,416 + +1.0 4,295,416 + -0.6 4,295,416 + -1.6 4,295,416 + -1.5 4,295,416 + -2.0 4,295,416 + -0.3 4,295,416 + -1.2 4,295,416 + -0.5 4,295,416 + -3.0 4,295,416 + -2.4 4,295,416 + -0.6 4,295,417 - -2.4 4,295,417 - -1.3 4,295,417 - -2.4 4,295,417 - -0.9 4,295,417 - -1.4 4,295,417 - +1.0 4,295,417 - -1.6 4,295,465 + -1.2 4,295,465 + +0.4 4,295,465 + +0.1 4,295,465 + -1.5 4,295,465 + +0.4 4,295,465 + -1.6 4,295,465 + +0.3 4,295,465 + -0.2 4,295,465 + +1.8 4,295,466 - +1.0 4,295,466 - -0.0 4,295,466 - +0.4 4,295,466 - +1.0 4,295,466 - +0.5 4,295,466 - +1.4 4,295,466 - -1.2 4,295,466 - +0.1 4,295,466 - +1.4 4,295,466 - -0.4 4,295,466 - +0.8 4,295,466 - -2.7 4,295,466 - +1.0 4,295,466 - -1.5 4,295,466 - -0.8 4,295,467 + +1.0 4,295,467 + +0.2 4,295,467 + -1.9 4,295,467 + -0.0 4,295,467 + -1.2 4,295,467 + +0.3 4,295,467 + +1.3 4,295,467 + -0.5 4,295,467 + -0.6 4,295,467 + -0.5 4,295,467 + -0.9 4,295,467 + +0.3 4,295,467 + -0.3 4,295,467 + +1.0 4,295,467 + -0.5 4,295,467 + -1.0 4,295,467 + -0.6 4,295,467 + -0.2 4,295,467 + +0.1 4,295,467 + -1.0 4,295,467 + -0.6 4,295,468 - -0.4 4,295,468 - -0.5 4,295,468 - +1.0 4,295,468 - -0.0 4,295,468 - -0.5 4,295,468 - -0.3 4,295,468 - -0.3 4,295,468 - +1.0 4,295,468 - -2.4 4,295,468 - -0.6 4,295,468 - -1.0 4,295,468 - +0.1 4,295,468 - -0.4 4,295,468 - -0.7 4,295,468 - -1.5 4,295,468 - -0.6 4,295,468 - +1.1 4,295,468 - -1.6 4,295,468 - -1.2 4,295,468 - -0.0 4,295,468 - +0.2 4,295,468 - +0.4 4,295,468 - +0.7 4,295,468 - +0.6 4,295,468 - -1.2 4,295,468 - -0.0 4,295,468 - -0.5 4,295,490 + -1.0 4,295,490 + +1.2 4,295,490 + +0.1 4,295,490 + +0.0 4,295,490 + +0.7 4,295,490 + +0.5 4,295,490 + +0.2 4,295,491 - +0.2 4,295,491 - -0.2 4,295,491 - -0.6 4,295,491 - +0.4 4,295,491 - +0.2 4,295,491 - +0.6 4,295,491 - -0.4 4,295,618 + -0.5 4,295,618 + -0.0 4,295,618 + +0.6 4,295,618 + +1.8 4,295,634 + -0.0 4,297,352 + +0.2 4,297,352 + -0.6 4,297,353 - -0.3 4,297,353 - -0.1 4,297,366 - +0.0
Or see this region's nucleotide sequence