Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt amiA and murI are separated by 12 nucleotides murI and sds are separated by 43 nucleotides sds and Synpcc7942_2363 are separated by 16 nucleotides Synpcc7942_2363 and Synpcc7942_2364 are separated by 19 nucleotides
Synpcc7942_2360: amiA - N-acetylmuramoyl-L-alanine amidase, at 2,426,823 to 2,427,857
amiA
Synpcc7942_2361: murI - glutamate racemase, at 2,427,870 to 2,428,739
murI
Synpcc7942_2362: sds - Trans-hexaprenyltranstransferase, at 2,428,783 to 2,429,754
sds
Synpcc7942_2363: Synpcc7942_2363 - hypothetical protein, at 2,429,771 to 2,430,142
_2363
Synpcc7942_2364: Synpcc7942_2364 - hypothetical protein, at 2,430,162 to 2,430,767
_2364
Position (kb)
2428
2429
2430 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2427.790 kb on - strand at 2427.829 kb on + strand at 2427.837 kb on - strand at 2427.839 kb on - strand at 2427.839 kb on - strand at 2427.899 kb on + strand at 2428.737 kb on - strand at 2429.782 kb on + strand at 2429.782 kb on + strand at 2429.790 kb on - strand at 2429.797 kb on - strand at 2429.850 kb on + strand, within Synpcc7942_2363 at 2429.858 kb on - strand, within Synpcc7942_2363 at 2429.888 kb on - strand, within Synpcc7942_2363 at 2429.895 kb on - strand, within Synpcc7942_2363 at 2429.910 kb on - strand, within Synpcc7942_2363 at 2429.910 kb on - strand, within Synpcc7942_2363 at 2430.034 kb on + strand, within Synpcc7942_2363 at 2430.037 kb on - strand, within Synpcc7942_2363 at 2430.042 kb on - strand, within Synpcc7942_2363 at 2430.054 kb on + strand, within Synpcc7942_2363 at 2430.059 kb on + strand, within Synpcc7942_2363 at 2430.062 kb on - strand, within Synpcc7942_2363 at 2430.089 kb on + strand, within Synpcc7942_2363 at 2430.096 kb on + strand, within Synpcc7942_2363 at 2430.097 kb on - strand, within Synpcc7942_2363 at 2430.097 kb on - strand, within Synpcc7942_2363 at 2430.116 kb on + strand at 2430.123 kb on + strand at 2430.131 kb on - strand at 2430.161 kb on - strand at 2430.170 kb on - strand at 2430.181 kb on + strand at 2430.186 kb on + strand at 2430.189 kb on - strand at 2430.191 kb on + strand at 2430.192 kb on - strand at 2430.192 kb on - strand at 2430.209 kb on - strand at 2430.264 kb on + strand, within Synpcc7942_2364 at 2430.297 kb on + strand, within Synpcc7942_2364 at 2430.331 kb on + strand, within Synpcc7942_2364 at 2430.333 kb on + strand, within Synpcc7942_2364 at 2430.341 kb on - strand, within Synpcc7942_2364 at 2430.351 kb on - strand, within Synpcc7942_2364 at 2430.378 kb on + strand, within Synpcc7942_2364 at 2430.379 kb on + strand, within Synpcc7942_2364 at 2430.379 kb on + strand, within Synpcc7942_2364 at 2430.435 kb on + strand, within Synpcc7942_2364 at 2430.448 kb on + strand, within Synpcc7942_2364 at 2430.455 kb on - strand, within Synpcc7942_2364 at 2430.455 kb on - strand, within Synpcc7942_2364 at 2430.456 kb on - strand, within Synpcc7942_2364 at 2430.456 kb on - strand, within Synpcc7942_2364 at 2430.493 kb on + strand, within Synpcc7942_2364 at 2430.501 kb on - strand, within Synpcc7942_2364 at 2430.515 kb on + strand, within Synpcc7942_2364 at 2430.525 kb on + strand, within Synpcc7942_2364 at 2430.551 kb on - strand, within Synpcc7942_2364 at 2430.586 kb on + strand, within Synpcc7942_2364 at 2430.621 kb on + strand, within Synpcc7942_2364 at 2430.648 kb on - strand, within Synpcc7942_2364 at 2430.651 kb on + strand, within Synpcc7942_2364 at 2430.659 kb on - strand, within Synpcc7942_2364 at 2430.675 kb on - strand, within Synpcc7942_2364 at 2430.679 kb on + strand, within Synpcc7942_2364 at 2430.708 kb on - strand at 2430.722 kb on + strand at 2430.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 2,427,790 - -0.7 2,427,829 + +0.2 2,427,837 - -0.1 2,427,839 - -0.7 2,427,839 - -2.1 2,427,899 + +0.9 2,428,737 - -0.1 2,429,782 + +0.9 2,429,782 + +0.4 2,429,790 - +0.5 2,429,797 - -1.9 2,429,850 + Synpcc7942_2363 0.21 -3.3 2,429,858 - Synpcc7942_2363 0.23 -2.4 2,429,888 - Synpcc7942_2363 0.31 -1.7 2,429,895 - Synpcc7942_2363 0.33 -0.1 2,429,910 - Synpcc7942_2363 0.37 -1.7 2,429,910 - Synpcc7942_2363 0.37 -2.7 2,430,034 + Synpcc7942_2363 0.71 -2.7 2,430,037 - Synpcc7942_2363 0.72 -2.1 2,430,042 - Synpcc7942_2363 0.73 -1.1 2,430,054 + Synpcc7942_2363 0.76 -2.9 2,430,059 + Synpcc7942_2363 0.77 -4.3 2,430,062 - Synpcc7942_2363 0.78 -4.7 2,430,089 + Synpcc7942_2363 0.85 -3.7 2,430,096 + Synpcc7942_2363 0.87 -5.6 2,430,097 - Synpcc7942_2363 0.88 -4.3 2,430,097 - Synpcc7942_2363 0.88 -3.4 2,430,116 + -2.1 2,430,123 + -1.7 2,430,131 - -1.1 2,430,161 - -1.7 2,430,170 - -3.1 2,430,181 + -2.1 2,430,186 + +0.4 2,430,189 - -4.1 2,430,191 + +0.3 2,430,192 - -2.4 2,430,192 - -3.4 2,430,209 - -0.1 2,430,264 + Synpcc7942_2364 0.17 -0.1 2,430,297 + Synpcc7942_2364 0.22 -1.3 2,430,331 + Synpcc7942_2364 0.28 -1.4 2,430,333 + Synpcc7942_2364 0.28 -0.1 2,430,341 - Synpcc7942_2364 0.30 -1.7 2,430,351 - Synpcc7942_2364 0.31 -3.9 2,430,378 + Synpcc7942_2364 0.36 +0.6 2,430,379 + Synpcc7942_2364 0.36 +0.3 2,430,379 + Synpcc7942_2364 0.36 +1.0 2,430,435 + Synpcc7942_2364 0.45 +0.7 2,430,448 + Synpcc7942_2364 0.47 +2.5 2,430,455 - Synpcc7942_2364 0.48 +0.4 2,430,455 - Synpcc7942_2364 0.48 +0.9 2,430,456 - Synpcc7942_2364 0.49 -1.3 2,430,456 - Synpcc7942_2364 0.49 +0.3 2,430,493 + Synpcc7942_2364 0.55 +0.9 2,430,501 - Synpcc7942_2364 0.56 +0.7 2,430,515 + Synpcc7942_2364 0.58 -0.7 2,430,525 + Synpcc7942_2364 0.60 +0.6 2,430,551 - Synpcc7942_2364 0.64 +0.3 2,430,586 + Synpcc7942_2364 0.70 -0.2 2,430,621 + Synpcc7942_2364 0.76 +1.5 2,430,648 - Synpcc7942_2364 0.80 -1.7 2,430,651 + Synpcc7942_2364 0.81 +0.4 2,430,659 - Synpcc7942_2364 0.82 -1.1 2,430,675 - Synpcc7942_2364 0.85 -3.3 2,430,679 + Synpcc7942_2364 0.85 -0.9 2,430,708 - +0.1 2,430,722 + +0.4 2,430,744 + -4.0
Or see this region's nucleotide sequence