Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_2159 and nhtA are separated by 61 nucleotides nhtA and Synpcc7942_2161 are separated by 12 nucleotides Synpcc7942_2161 and Synpcc7942_2162 are separated by 188 nucleotides
Synpcc7942_2159: Synpcc7942_2159 - hypothetical protein, at 2,241,719 to 2,242,651
_2159
Synpcc7942_2160: nhtA - alanine-glyoxylate aminotransferase, at 2,242,713 to 2,243,867
nhtA
Synpcc7942_2161: Synpcc7942_2161 - hypothetical protein, at 2,243,880 to 2,244,536
_2161
Synpcc7942_2162: Synpcc7942_2162 - hypothetical protein, at 2,244,725 to 2,244,940
_2162
Position (kb)
2242
2243
2244 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2241.731 kb on - strand at 2241.749 kb on + strand at 2241.750 kb on + strand at 2241.813 kb on + strand, within Synpcc7942_2159 at 2241.844 kb on - strand, within Synpcc7942_2159 at 2241.886 kb on + strand, within Synpcc7942_2159 at 2241.894 kb on - strand, within Synpcc7942_2159 at 2241.896 kb on + strand, within Synpcc7942_2159 at 2241.929 kb on + strand, within Synpcc7942_2159 at 2241.929 kb on + strand, within Synpcc7942_2159 at 2241.964 kb on - strand, within Synpcc7942_2159 at 2241.972 kb on - strand, within Synpcc7942_2159 at 2241.979 kb on + strand, within Synpcc7942_2159 at 2242.009 kb on - strand, within Synpcc7942_2159 at 2242.042 kb on + strand, within Synpcc7942_2159 at 2242.042 kb on + strand, within Synpcc7942_2159 at 2242.042 kb on + strand, within Synpcc7942_2159 at 2242.050 kb on - strand, within Synpcc7942_2159 at 2242.067 kb on + strand, within Synpcc7942_2159 at 2242.074 kb on + strand, within Synpcc7942_2159 at 2242.075 kb on - strand, within Synpcc7942_2159 at 2242.094 kb on + strand, within Synpcc7942_2159 at 2242.094 kb on + strand, within Synpcc7942_2159 at 2242.099 kb on + strand, within Synpcc7942_2159 at 2242.100 kb on + strand, within Synpcc7942_2159 at 2242.108 kb on - strand, within Synpcc7942_2159 at 2242.182 kb on + strand, within Synpcc7942_2159 at 2242.185 kb on - strand, within Synpcc7942_2159 at 2242.197 kb on - strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.199 kb on + strand, within Synpcc7942_2159 at 2242.202 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.207 kb on - strand, within Synpcc7942_2159 at 2242.268 kb on + strand, within Synpcc7942_2159 at 2242.270 kb on + strand, within Synpcc7942_2159 at 2242.276 kb on - strand, within Synpcc7942_2159 at 2242.338 kb on - strand, within Synpcc7942_2159 at 2242.345 kb on - strand, within Synpcc7942_2159 at 2242.352 kb on + strand, within Synpcc7942_2159 at 2242.392 kb on - strand, within Synpcc7942_2159 at 2242.444 kb on + strand, within Synpcc7942_2159 at 2242.471 kb on + strand, within Synpcc7942_2159 at 2242.479 kb on - strand, within Synpcc7942_2159 at 2242.506 kb on - strand, within Synpcc7942_2159 at 2242.511 kb on + strand, within Synpcc7942_2159 at 2242.519 kb on - strand, within Synpcc7942_2159 at 2242.528 kb on + strand, within Synpcc7942_2159 at 2242.536 kb on - strand, within Synpcc7942_2159 at 2242.537 kb on - strand, within Synpcc7942_2159 at 2242.545 kb on + strand, within Synpcc7942_2159 at 2242.545 kb on + strand, within Synpcc7942_2159 at 2242.553 kb on - strand, within Synpcc7942_2159 at 2242.567 kb on + strand at 2242.585 kb on - strand at 2242.590 kb on + strand at 2242.598 kb on - strand at 2242.598 kb on - strand at 2242.598 kb on - strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.608 kb on - strand at 2242.608 kb on - strand at 2242.622 kb on + strand at 2242.630 kb on - strand at 2242.641 kb on - strand at 2242.643 kb on + strand at 2242.683 kb on - strand at 2242.703 kb on + strand at 2242.746 kb on + strand at 2242.798 kb on - strand at 2242.808 kb on - strand at 2242.826 kb on + strand at 2242.901 kb on - strand, within nhtA at 2242.971 kb on - strand at 2242.993 kb on - strand, within nhtA at 2243.097 kb on - strand, within nhtA at 2243.120 kb on - strand, within nhtA at 2243.153 kb on - strand, within nhtA at 2243.202 kb on + strand, within nhtA at 2243.210 kb on - strand, within nhtA at 2243.462 kb on + strand, within nhtA at 2243.669 kb on - strand, within nhtA at 2243.855 kb on + strand at 2243.855 kb on - strand at 2243.869 kb on - strand at 2243.871 kb on + strand at 2243.937 kb on - strand at 2243.949 kb on - strand, within Synpcc7942_2161 at 2243.985 kb on + strand, within Synpcc7942_2161 at 2244.069 kb on - strand, within Synpcc7942_2161 at 2244.196 kb on - strand, within Synpcc7942_2161 at 2244.201 kb on - strand, within Synpcc7942_2161 at 2244.201 kb on - strand, within Synpcc7942_2161 at 2244.201 kb on - strand, within Synpcc7942_2161 at 2244.210 kb on + strand, within Synpcc7942_2161 at 2244.395 kb on + strand, within Synpcc7942_2161 at 2244.431 kb on + strand, within Synpcc7942_2161 at 2244.431 kb on + strand, within Synpcc7942_2161 at 2244.431 kb on + strand, within Synpcc7942_2161 at 2244.478 kb on + strand at 2244.682 kb on - strand at 2244.682 kb on - strand at 2244.716 kb on + strand at 2244.740 kb on + strand at 2244.764 kb on - strand, within Synpcc7942_2162 at 2244.787 kb on - strand, within Synpcc7942_2162 at 2244.804 kb on - strand, within Synpcc7942_2162 at 2244.836 kb on + strand, within Synpcc7942_2162 at 2244.839 kb on - strand, within Synpcc7942_2162 at 2244.839 kb on - strand, within Synpcc7942_2162 at 2244.844 kb on - strand, within Synpcc7942_2162
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 2,241,731 - -1.4 2,241,749 + +1.2 2,241,750 + -1.5 2,241,813 + Synpcc7942_2159 0.10 -1.9 2,241,844 - Synpcc7942_2159 0.13 +1.5 2,241,886 + Synpcc7942_2159 0.18 +0.9 2,241,894 - Synpcc7942_2159 0.19 +0.1 2,241,896 + Synpcc7942_2159 0.19 -0.7 2,241,929 + Synpcc7942_2159 0.23 +1.1 2,241,929 + Synpcc7942_2159 0.23 +1.1 2,241,964 - Synpcc7942_2159 0.26 +1.7 2,241,972 - Synpcc7942_2159 0.27 +0.9 2,241,979 + Synpcc7942_2159 0.28 +1.1 2,242,009 - Synpcc7942_2159 0.31 +0.3 2,242,042 + Synpcc7942_2159 0.35 -0.3 2,242,042 + Synpcc7942_2159 0.35 -1.1 2,242,042 + Synpcc7942_2159 0.35 +0.3 2,242,050 - Synpcc7942_2159 0.35 -0.2 2,242,067 + Synpcc7942_2159 0.37 -1.3 2,242,074 + Synpcc7942_2159 0.38 +1.2 2,242,075 - Synpcc7942_2159 0.38 +1.7 2,242,094 + Synpcc7942_2159 0.40 -0.1 2,242,094 + Synpcc7942_2159 0.40 +0.6 2,242,099 + Synpcc7942_2159 0.41 +0.7 2,242,100 + Synpcc7942_2159 0.41 -2.1 2,242,108 - Synpcc7942_2159 0.42 +1.1 2,242,182 + Synpcc7942_2159 0.50 -1.3 2,242,185 - Synpcc7942_2159 0.50 +1.3 2,242,197 - Synpcc7942_2159 0.51 -0.1 2,242,199 + Synpcc7942_2159 0.51 -0.5 2,242,199 + Synpcc7942_2159 0.51 +1.0 2,242,199 + Synpcc7942_2159 0.51 -1.4 2,242,199 + Synpcc7942_2159 0.51 +1.7 2,242,199 + Synpcc7942_2159 0.51 +1.0 2,242,199 + Synpcc7942_2159 0.51 +0.9 2,242,199 + Synpcc7942_2159 0.51 +0.2 2,242,199 + Synpcc7942_2159 0.51 -0.1 2,242,199 + Synpcc7942_2159 0.51 +0.3 2,242,199 + Synpcc7942_2159 0.51 -0.1 2,242,199 + Synpcc7942_2159 0.51 +0.2 2,242,199 + Synpcc7942_2159 0.51 +2.0 2,242,199 + Synpcc7942_2159 0.51 +0.1 2,242,199 + Synpcc7942_2159 0.51 -1.2 2,242,199 + Synpcc7942_2159 0.51 -0.4 2,242,202 - Synpcc7942_2159 0.52 +0.6 2,242,207 - Synpcc7942_2159 0.52 -0.5 2,242,207 - Synpcc7942_2159 0.52 -0.3 2,242,207 - Synpcc7942_2159 0.52 +0.4 2,242,207 - Synpcc7942_2159 0.52 +2.2 2,242,207 - Synpcc7942_2159 0.52 -0.1 2,242,207 - Synpcc7942_2159 0.52 +1.7 2,242,207 - Synpcc7942_2159 0.52 -1.1 2,242,207 - Synpcc7942_2159 0.52 -2.2 2,242,207 - Synpcc7942_2159 0.52 +1.1 2,242,207 - Synpcc7942_2159 0.52 +0.1 2,242,207 - Synpcc7942_2159 0.52 +1.9 2,242,207 - Synpcc7942_2159 0.52 +0.9 2,242,207 - Synpcc7942_2159 0.52 -0.0 2,242,207 - Synpcc7942_2159 0.52 -2.1 2,242,207 - Synpcc7942_2159 0.52 +0.8 2,242,268 + Synpcc7942_2159 0.59 +0.8 2,242,270 + Synpcc7942_2159 0.59 +2.2 2,242,276 - Synpcc7942_2159 0.60 -0.7 2,242,338 - Synpcc7942_2159 0.66 +0.3 2,242,345 - Synpcc7942_2159 0.67 -1.7 2,242,352 + Synpcc7942_2159 0.68 +2.5 2,242,392 - Synpcc7942_2159 0.72 +0.4 2,242,444 + Synpcc7942_2159 0.78 -1.1 2,242,471 + Synpcc7942_2159 0.81 +0.5 2,242,479 - Synpcc7942_2159 0.81 +0.9 2,242,506 - Synpcc7942_2159 0.84 +1.6 2,242,511 + Synpcc7942_2159 0.85 +1.3 2,242,519 - Synpcc7942_2159 0.86 +0.9 2,242,528 + Synpcc7942_2159 0.87 +2.1 2,242,536 - Synpcc7942_2159 0.88 +0.3 2,242,537 - Synpcc7942_2159 0.88 -2.9 2,242,545 + Synpcc7942_2159 0.89 +0.8 2,242,545 + Synpcc7942_2159 0.89 +1.0 2,242,553 - Synpcc7942_2159 0.89 +0.9 2,242,567 + +0.8 2,242,585 - +0.8 2,242,590 + +1.3 2,242,598 - +0.8 2,242,598 - +0.7 2,242,598 - +0.9 2,242,600 + +1.7 2,242,600 + +1.4 2,242,600 + +0.9 2,242,608 - +1.0 2,242,608 - +0.7 2,242,622 + +1.5 2,242,630 - -1.1 2,242,641 - -0.1 2,242,643 + -2.4 2,242,683 - -2.7 2,242,703 + -2.4 2,242,746 + -2.4 2,242,798 - -1.1 2,242,808 - -2.4 2,242,826 + -1.9 2,242,901 - nhtA Synpcc7942_2160 0.16 -1.4 2,242,971 - -2.1 2,242,993 - nhtA Synpcc7942_2160 0.24 -0.3 2,243,097 - nhtA Synpcc7942_2160 0.33 -1.7 2,243,120 - nhtA Synpcc7942_2160 0.35 -2.4 2,243,153 - nhtA Synpcc7942_2160 0.38 -3.1 2,243,202 + nhtA Synpcc7942_2160 0.42 -2.1 2,243,210 - nhtA Synpcc7942_2160 0.43 -3.3 2,243,462 + nhtA Synpcc7942_2160 0.65 -1.9 2,243,669 - nhtA Synpcc7942_2160 0.83 -1.7 2,243,855 + +0.0 2,243,855 - -0.1 2,243,869 - +1.0 2,243,871 + +0.5 2,243,937 - +1.2 2,243,949 - Synpcc7942_2161 0.11 -0.4 2,243,985 + Synpcc7942_2161 0.16 -1.2 2,244,069 - Synpcc7942_2161 0.29 -0.0 2,244,196 - Synpcc7942_2161 0.48 +0.8 2,244,201 - Synpcc7942_2161 0.49 +2.1 2,244,201 - Synpcc7942_2161 0.49 -0.1 2,244,201 - Synpcc7942_2161 0.49 -1.1 2,244,210 + Synpcc7942_2161 0.50 +0.9 2,244,395 + Synpcc7942_2161 0.78 +0.9 2,244,431 + Synpcc7942_2161 0.84 -0.4 2,244,431 + Synpcc7942_2161 0.84 -1.4 2,244,431 + Synpcc7942_2161 0.84 -0.2 2,244,478 + +2.9 2,244,682 - +0.6 2,244,682 - +1.5 2,244,716 + -1.1 2,244,740 + +0.8 2,244,764 - Synpcc7942_2162 0.18 +0.3 2,244,787 - Synpcc7942_2162 0.29 +0.6 2,244,804 - Synpcc7942_2162 0.37 +0.9 2,244,836 + Synpcc7942_2162 0.51 -2.7 2,244,839 - Synpcc7942_2162 0.53 -1.1 2,244,839 - Synpcc7942_2162 0.53 +1.4 2,244,844 - Synpcc7942_2162 0.55 -0.1
Or see this region's nucleotide sequence