Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acsF and Synpcc7942_1908 are separated by 153 nucleotides Synpcc7942_1908 and Synpcc7942_1909 are separated by 60 nucleotides Synpcc7942_1909 and ubiX are separated by 2 nucleotides
Synpcc7942_1907: acsF - Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase, at 1,983,417 to 1,984,493
acsF
Synpcc7942_1908: Synpcc7942_1908 - hypothetical protein, at 1,984,647 to 1,985,081
_1908
Synpcc7942_1909: Synpcc7942_1909 - hypothetical protein, at 1,985,142 to 1,985,738
_1909
Synpcc7942_1910: ubiX - aromatic acid decarboxylase, at 1,985,741 to 1,986,379
ubiX
Position (kb)
1984
1985
1986 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1984.660 kb on + strand at 1984.664 kb on + strand at 1984.668 kb on - strand at 1984.689 kb on - strand at 1984.717 kb on - strand, within Synpcc7942_1908 at 1984.742 kb on + strand, within Synpcc7942_1908 at 1984.752 kb on + strand, within Synpcc7942_1908 at 1984.787 kb on + strand, within Synpcc7942_1908 at 1984.805 kb on - strand, within Synpcc7942_1908 at 1984.806 kb on - strand, within Synpcc7942_1908 at 1984.887 kb on - strand, within Synpcc7942_1908 at 1984.887 kb on - strand, within Synpcc7942_1908 at 1984.938 kb on + strand, within Synpcc7942_1908 at 1984.946 kb on - strand, within Synpcc7942_1908 at 1984.947 kb on - strand, within Synpcc7942_1908 at 1984.965 kb on - strand, within Synpcc7942_1908 at 1984.965 kb on - strand, within Synpcc7942_1908 at 1985.035 kb on + strand, within Synpcc7942_1908 at 1985.072 kb on - strand at 1985.092 kb on - strand at 1985.092 kb on - strand at 1985.110 kb on + strand at 1985.113 kb on - strand at 1985.113 kb on - strand at 1985.115 kb on + strand at 1985.123 kb on - strand at 1985.123 kb on - strand at 1985.129 kb on - strand at 1985.227 kb on - strand, within Synpcc7942_1909 at 1985.733 kb on + strand at 1985.741 kb on - strand at 1985.746 kb on - strand at 1985.763 kb on - strand at 1985.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 1,984,660 + -1.3 1,984,664 + +0.5 1,984,668 - -1.1 1,984,689 - -0.9 1,984,717 - Synpcc7942_1908 0.16 -1.7 1,984,742 + Synpcc7942_1908 0.22 -1.7 1,984,752 + Synpcc7942_1908 0.24 -1.9 1,984,787 + Synpcc7942_1908 0.32 -1.1 1,984,805 - Synpcc7942_1908 0.36 -0.1 1,984,806 - Synpcc7942_1908 0.37 +0.5 1,984,887 - Synpcc7942_1908 0.55 -1.4 1,984,887 - Synpcc7942_1908 0.55 -0.7 1,984,938 + Synpcc7942_1908 0.67 -2.7 1,984,946 - Synpcc7942_1908 0.69 +0.2 1,984,947 - Synpcc7942_1908 0.69 -1.7 1,984,965 - Synpcc7942_1908 0.73 -0.9 1,984,965 - Synpcc7942_1908 0.73 -0.1 1,985,035 + Synpcc7942_1908 0.89 -0.4 1,985,072 - -0.3 1,985,092 - -2.7 1,985,092 - -0.1 1,985,110 + +0.9 1,985,113 - +1.0 1,985,113 - -0.9 1,985,115 + +1.1 1,985,123 - +1.9 1,985,123 - +0.1 1,985,129 - +1.5 1,985,227 - Synpcc7942_1909 0.14 -3.5 1,985,733 + -0.1 1,985,741 - +0.4 1,985,746 - -2.7 1,985,763 - +0.3 1,985,763 - +0.3
Or see this region's nucleotide sequence