Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1521

Experiment: Bacitracin 0.0009765625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisD and rpsT are separated by 205 nucleotidesrpsT and tatD are separated by 66 nucleotidestatD and rpoB are separated by 82 nucleotides Synpcc7942_1519: hisD - histidinol dehydrogenase, at 1,570,976 to 1,572,280 hisD Synpcc7942_1520: rpsT - 30S ribosomal protein S20, at 1,572,486 to 1,572,782 rpsT Synpcc7942_1521: tatD - Sec-independent protein translocase TatD, at 1,572,849 to 1,573,646 tatD Synpcc7942_1522: rpoB - DNA-directed RNA polymerase subunit beta, at 1,573,729 to 1,577,031 rpoB Position (kb) 1572 1573 1574Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1572.359 kb on + strandat 1572.776 kb on + strandat 1572.776 kb on + strandat 1572.784 kb on - strandat 1572.784 kb on - strandat 1572.784 kb on - strandat 1572.784 kb on - strandat 1572.800 kb on + strandat 1572.800 kb on + strandat 1572.800 kb on + strandat 1572.806 kb on + strandat 1572.808 kb on + strandat 1572.808 kb on - strandat 1572.808 kb on - strandat 1572.808 kb on - strandat 1572.808 kb on - strandat 1572.808 kb on - strandat 1572.819 kb on + strandat 1572.839 kb on + strandat 1572.852 kb on - strandat 1572.944 kb on - strand, within tatDat 1572.951 kb on + strand, within tatDat 1572.951 kb on + strand, within tatDat 1572.959 kb on - strand, within tatDat 1572.959 kb on - strand, within tatDat 1572.959 kb on - strand, within tatDat 1572.987 kb on + strand, within tatDat 1572.995 kb on - strand, within tatDat 1573.042 kb on + strand, within tatDat 1573.043 kb on + strand, within tatDat 1573.055 kb on + strand, within tatDat 1573.056 kb on - strand, within tatDat 1573.056 kb on - strand, within tatDat 1573.104 kb on + strand, within tatDat 1573.156 kb on + strand, within tatDat 1573.158 kb on + strand, within tatDat 1573.166 kb on - strand, within tatDat 1573.190 kb on - strand, within tatDat 1573.190 kb on - strand, within tatDat 1573.226 kb on - strand, within tatDat 1573.245 kb on - strand, within tatDat 1573.281 kb on - strand, within tatDat 1573.289 kb on + strand, within tatDat 1573.291 kb on - strand, within tatDat 1573.309 kb on - strand, within tatDat 1573.314 kb on - strand, within tatDat 1573.314 kb on - strand, within tatDat 1573.395 kb on - strand, within tatDat 1573.403 kb on + strand, within tatDat 1573.413 kb on + strand, within tatDat 1573.496 kb on + strand, within tatDat 1573.551 kb on - strand, within tatDat 1573.563 kb on - strand, within tatDat 1573.564 kb on - strand, within tatDat 1573.572 kb on - strandat 1573.572 kb on - strandat 1573.600 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml
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1,572,359 + +0.7
1,572,776 + -1.6
1,572,776 + -0.5
1,572,784 - +2.1
1,572,784 - -0.5
1,572,784 - -2.4
1,572,784 - -2.4
1,572,800 + -0.4
1,572,800 + -1.1
1,572,800 + +0.7
1,572,806 + +1.5
1,572,808 + -2.4
1,572,808 - -0.1
1,572,808 - -5.4
1,572,808 - -1.1
1,572,808 - -0.1
1,572,808 - -2.6
1,572,819 + +0.1
1,572,839 + +0.9
1,572,852 - -0.1
1,572,944 - tatD Synpcc7942_1521 0.12 -0.6
1,572,951 + tatD Synpcc7942_1521 0.13 -1.1
1,572,951 + tatD Synpcc7942_1521 0.13 -1.1
1,572,959 - tatD Synpcc7942_1521 0.14 +2.1
1,572,959 - tatD Synpcc7942_1521 0.14 -1.1
1,572,959 - tatD Synpcc7942_1521 0.14 -1.1
1,572,987 + tatD Synpcc7942_1521 0.17 -1.2
1,572,995 - tatD Synpcc7942_1521 0.18 -2.5
1,573,042 + tatD Synpcc7942_1521 0.24 -3.5
1,573,043 + tatD Synpcc7942_1521 0.24 -0.2
1,573,055 + tatD Synpcc7942_1521 0.26 -2.1
1,573,056 - tatD Synpcc7942_1521 0.26 -1.3
1,573,056 - tatD Synpcc7942_1521 0.26 -2.1
1,573,104 + tatD Synpcc7942_1521 0.32 -0.7
1,573,156 + tatD Synpcc7942_1521 0.38 -1.1
1,573,158 + tatD Synpcc7942_1521 0.39 -0.6
1,573,166 - tatD Synpcc7942_1521 0.40 -1.6
1,573,190 - tatD Synpcc7942_1521 0.43 -1.5
1,573,190 - tatD Synpcc7942_1521 0.43 -1.1
1,573,226 - tatD Synpcc7942_1521 0.47 -1.1
1,573,245 - tatD Synpcc7942_1521 0.50 +0.5
1,573,281 - tatD Synpcc7942_1521 0.54 -0.4
1,573,289 + tatD Synpcc7942_1521 0.55 +0.0
1,573,291 - tatD Synpcc7942_1521 0.55 +0.4
1,573,309 - tatD Synpcc7942_1521 0.58 -0.5
1,573,314 - tatD Synpcc7942_1521 0.58 -1.6
1,573,314 - tatD Synpcc7942_1521 0.58 -0.8
1,573,395 - tatD Synpcc7942_1521 0.68 -1.1
1,573,403 + tatD Synpcc7942_1521 0.69 +0.9
1,573,413 + tatD Synpcc7942_1521 0.71 -3.1
1,573,496 + tatD Synpcc7942_1521 0.81 -1.3
1,573,551 - tatD Synpcc7942_1521 0.88 -0.1
1,573,563 - tatD Synpcc7942_1521 0.89 -2.1
1,573,564 - tatD Synpcc7942_1521 0.90 -2.9
1,573,572 - -0.8
1,573,572 - -1.5
1,573,600 + -1.9

Or see this region's nucleotide sequence