Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0828 and Synpcc7942_0829 are separated by 264 nucleotides Synpcc7942_0829 and asnC are separated by 103 nucleotides asnC and Synpcc7942_0831 are separated by 72 nucleotides
Synpcc7942_0828: Synpcc7942_0828 - hypothetical protein, at 822,873 to 823,241
_0828
Synpcc7942_0829: Synpcc7942_0829 - Lipoproteins-like, at 823,506 to 823,838
_0829
Synpcc7942_0830: asnC - asparaginyl-tRNA synthetase, at 823,942 to 825,330
asnC
Synpcc7942_0831: Synpcc7942_0831 - hypothetical protein, at 825,403 to 826,005
_0831
Position (kb) 823
824
825
826 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 822.950 kb on - strand, within Synpcc7942_0828 at 822.961 kb on + strand, within Synpcc7942_0828 at 822.968 kb on - strand, within Synpcc7942_0828 at 822.997 kb on + strand, within Synpcc7942_0828 at 823.005 kb on - strand, within Synpcc7942_0828 at 823.059 kb on + strand, within Synpcc7942_0828 at 823.115 kb on - strand, within Synpcc7942_0828 at 823.121 kb on + strand, within Synpcc7942_0828 at 823.129 kb on - strand, within Synpcc7942_0828 at 823.129 kb on - strand, within Synpcc7942_0828 at 823.230 kb on + strand at 823.231 kb on - strand at 823.267 kb on + strand at 823.280 kb on + strand at 823.288 kb on - strand at 823.342 kb on + strand at 823.347 kb on + strand at 823.347 kb on + strand at 823.351 kb on + strand at 823.355 kb on - strand at 823.383 kb on + strand at 823.447 kb on - strand at 823.481 kb on - strand at 823.481 kb on - strand at 823.563 kb on + strand, within Synpcc7942_0829 at 823.563 kb on + strand, within Synpcc7942_0829 at 823.585 kb on - strand at 823.590 kb on - strand, within Synpcc7942_0829 at 823.650 kb on + strand, within Synpcc7942_0829 at 823.658 kb on - strand, within Synpcc7942_0829 at 823.725 kb on - strand, within Synpcc7942_0829 at 823.758 kb on + strand, within Synpcc7942_0829 at 823.766 kb on - strand, within Synpcc7942_0829 at 823.767 kb on - strand, within Synpcc7942_0829 at 823.791 kb on + strand, within Synpcc7942_0829 at 823.804 kb on - strand, within Synpcc7942_0829 at 823.808 kb on - strand at 823.815 kb on + strand at 823.823 kb on - strand at 823.823 kb on - strand at 823.828 kb on + strand at 823.837 kb on + strand at 823.850 kb on + strand at 823.854 kb on + strand at 823.883 kb on + strand at 823.885 kb on + strand at 823.885 kb on + strand at 823.885 kb on + strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.922 kb on + strand at 823.956 kb on + strand at 823.967 kb on + strand at 823.972 kb on + strand at 823.976 kb on - strand at 823.987 kb on + strand at 823.995 kb on - strand at 824.010 kb on - strand at 824.013 kb on + strand at 824.013 kb on + strand at 824.021 kb on - strand at 824.029 kb on - strand at 824.029 kb on - strand at 824.032 kb on + strand at 824.038 kb on + strand at 824.038 kb on + strand at 824.038 kb on + strand at 824.099 kb on + strand, within asnC at 824.106 kb on - strand, within asnC at 824.136 kb on + strand, within asnC at 824.139 kb on + strand, within asnC at 824.147 kb on - strand, within asnC at 824.147 kb on - strand, within asnC at 824.152 kb on - strand, within asnC at 824.161 kb on + strand, within asnC at 824.161 kb on + strand, within asnC at 824.180 kb on - strand, within asnC at 824.181 kb on - strand, within asnC at 824.187 kb on + strand, within asnC at 824.194 kb on + strand, within asnC at 824.195 kb on - strand at 824.195 kb on - strand, within asnC at 824.201 kb on - strand, within asnC at 824.207 kb on - strand, within asnC at 824.216 kb on - strand, within asnC at 824.242 kb on + strand, within asnC at 824.249 kb on - strand, within asnC at 824.310 kb on + strand, within asnC at 824.330 kb on - strand, within asnC at 824.330 kb on - strand, within asnC at 824.384 kb on + strand, within asnC at 824.384 kb on + strand, within asnC at 824.392 kb on - strand, within asnC at 824.460 kb on + strand, within asnC at 824.468 kb on - strand, within asnC at 824.469 kb on + strand, within asnC at 824.489 kb on + strand, within asnC at 824.489 kb on + strand, within asnC at 824.492 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.549 kb on + strand, within asnC at 824.568 kb on + strand, within asnC at 824.576 kb on - strand, within asnC at 824.580 kb on + strand, within asnC at 824.588 kb on - strand, within asnC at 824.604 kb on + strand, within asnC at 824.604 kb on + strand, within asnC at 824.605 kb on + strand, within asnC at 824.612 kb on + strand, within asnC at 824.612 kb on - strand, within asnC at 824.612 kb on - strand, within asnC at 824.612 kb on - strand, within asnC at 824.613 kb on - strand, within asnC at 824.613 kb on - strand at 824.620 kb on - strand, within asnC at 824.620 kb on - strand, within asnC at 824.640 kb on + strand, within asnC at 824.648 kb on - strand, within asnC at 824.648 kb on - strand, within asnC at 824.667 kb on + strand, within asnC at 824.668 kb on - strand, within asnC at 824.675 kb on - strand, within asnC at 824.713 kb on + strand, within asnC at 824.721 kb on - strand, within asnC at 824.721 kb on - strand, within asnC at 824.756 kb on - strand, within asnC at 824.779 kb on + strand, within asnC at 824.788 kb on - strand, within asnC at 824.815 kb on + strand, within asnC at 824.815 kb on + strand, within asnC at 824.823 kb on - strand, within asnC at 824.836 kb on + strand, within asnC at 824.844 kb on - strand, within asnC at 824.863 kb on + strand, within asnC at 824.871 kb on - strand, within asnC at 824.930 kb on - strand, within asnC at 824.966 kb on - strand, within asnC at 824.979 kb on - strand, within asnC at 825.036 kb on + strand, within asnC at 825.036 kb on + strand, within asnC at 825.044 kb on - strand, within asnC at 825.087 kb on - strand, within asnC at 825.088 kb on - strand, within asnC at 825.115 kb on - strand, within asnC at 825.142 kb on - strand, within asnC at 825.142 kb on - strand, within asnC at 825.169 kb on + strand, within asnC at 825.188 kb on + strand, within asnC at 825.188 kb on + strand, within asnC at 825.239 kb on + strand at 825.239 kb on + strand at 825.240 kb on - strand at 825.253 kb on + strand at 825.268 kb on + strand at 825.268 kb on + strand at 825.318 kb on - strand at 825.340 kb on + strand at 825.348 kb on - strand at 825.378 kb on - strand at 825.378 kb on - strand at 825.378 kb on - strand at 825.400 kb on - strand at 825.409 kb on - strand at 825.409 kb on - strand at 825.413 kb on + strand at 825.470 kb on - strand, within Synpcc7942_0831 at 825.521 kb on - strand, within Synpcc7942_0831 at 825.535 kb on + strand, within Synpcc7942_0831 at 825.539 kb on + strand, within Synpcc7942_0831 at 825.545 kb on + strand, within Synpcc7942_0831 at 825.545 kb on + strand, within Synpcc7942_0831 at 825.545 kb on + strand, within Synpcc7942_0831 at 825.553 kb on - strand, within Synpcc7942_0831 at 825.553 kb on - strand, within Synpcc7942_0831 at 825.553 kb on - strand, within Synpcc7942_0831 at 825.553 kb on - strand, within Synpcc7942_0831 at 825.562 kb on + strand, within Synpcc7942_0831 at 825.564 kb on + strand, within Synpcc7942_0831 at 825.564 kb on + strand, within Synpcc7942_0831 at 825.564 kb on + strand, within Synpcc7942_0831 at 825.564 kb on + strand, within Synpcc7942_0831 at 825.570 kb on + strand, within Synpcc7942_0831 at 825.578 kb on - strand, within Synpcc7942_0831 at 825.578 kb on - strand, within Synpcc7942_0831 at 825.689 kb on - strand, within Synpcc7942_0831 at 825.739 kb on + strand, within Synpcc7942_0831 at 825.740 kb on + strand, within Synpcc7942_0831 at 825.747 kb on - strand, within Synpcc7942_0831 at 825.747 kb on - strand, within Synpcc7942_0831 at 825.781 kb on + strand, within Synpcc7942_0831 at 825.802 kb on + strand, within Synpcc7942_0831 at 825.823 kb on + strand, within Synpcc7942_0831 at 825.823 kb on + strand, within Synpcc7942_0831 at 825.831 kb on - strand, within Synpcc7942_0831 at 825.831 kb on - strand, within Synpcc7942_0831 at 825.870 kb on + strand, within Synpcc7942_0831 at 825.897 kb on - strand, within Synpcc7942_0831 at 825.902 kb on + strand, within Synpcc7942_0831 at 825.938 kb on + strand, within Synpcc7942_0831 at 825.938 kb on + strand, within Synpcc7942_0831 at 825.938 kb on + strand, within Synpcc7942_0831 at 825.946 kb on - strand at 825.946 kb on - strand at 825.951 kb on - strand at 825.951 kb on - strand at 825.958 kb on + strand at 825.958 kb on - strand at 825.966 kb on - strand at 825.969 kb on + strand at 825.976 kb on - strand at 826.017 kb on + strand at 826.042 kb on + strand at 826.053 kb on + strand at 826.054 kb on + strand at 826.061 kb on - strand at 826.076 kb on + strand at 826.084 kb on - strand at 826.158 kb on + strand at 826.172 kb on - strand at 826.202 kb on - strand at 826.221 kb on - strand at 826.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 822,950 - Synpcc7942_0828 0.21 -3.6 822,961 + Synpcc7942_0828 0.24 +1.5 822,968 - Synpcc7942_0828 0.26 +0.1 822,997 + Synpcc7942_0828 0.34 +1.5 823,005 - Synpcc7942_0828 0.36 -0.3 823,059 + Synpcc7942_0828 0.50 -0.0 823,115 - Synpcc7942_0828 0.66 -0.5 823,121 + Synpcc7942_0828 0.67 +0.5 823,129 - Synpcc7942_0828 0.69 -0.4 823,129 - Synpcc7942_0828 0.69 +0.8 823,230 + +1.1 823,231 - -0.6 823,267 + +2.7 823,280 + -0.9 823,288 - -0.1 823,342 + +0.9 823,347 + -0.6 823,347 + -1.9 823,351 + -4.3 823,355 - +1.5 823,383 + -0.5 823,447 - -2.9 823,481 - -0.5 823,481 - -0.1 823,563 + Synpcc7942_0829 0.17 -0.1 823,563 + Synpcc7942_0829 0.17 -2.3 823,585 - +0.5 823,590 - Synpcc7942_0829 0.25 +0.5 823,650 + Synpcc7942_0829 0.43 +0.2 823,658 - Synpcc7942_0829 0.46 +0.1 823,725 - Synpcc7942_0829 0.66 +0.5 823,758 + Synpcc7942_0829 0.76 +1.6 823,766 - Synpcc7942_0829 0.78 +1.5 823,767 - Synpcc7942_0829 0.78 +0.5 823,791 + Synpcc7942_0829 0.86 +0.6 823,804 - Synpcc7942_0829 0.89 -0.1 823,808 - +0.9 823,815 + -0.1 823,823 - +0.8 823,823 - +0.1 823,828 + +1.9 823,837 + -0.1 823,850 + +0.1 823,854 + -0.1 823,883 + +0.4 823,885 + -3.3 823,885 + -0.4 823,885 + -3.1 823,893 - -1.6 823,893 - +2.0 823,893 - +0.8 823,893 - +2.7 823,893 - +0.9 823,893 - +1.4 823,922 + +0.6 823,956 + -0.1 823,967 + +0.3 823,972 + +1.9 823,976 - +1.1 823,987 + -0.5 823,995 - +0.5 824,010 - +0.2 824,013 + +1.7 824,013 + +1.1 824,021 - +2.2 824,029 - -0.1 824,029 - +1.1 824,032 + +0.9 824,038 + +2.9 824,038 + -2.3 824,038 + +1.3 824,099 + asnC Synpcc7942_0830 0.11 +1.9 824,106 - asnC Synpcc7942_0830 0.12 -0.4 824,136 + asnC Synpcc7942_0830 0.14 +1.2 824,139 + asnC Synpcc7942_0830 0.14 +1.8 824,147 - asnC Synpcc7942_0830 0.15 -0.7 824,147 - asnC Synpcc7942_0830 0.15 +2.5 824,152 - asnC Synpcc7942_0830 0.15 +0.9 824,161 + asnC Synpcc7942_0830 0.16 +0.5 824,161 + asnC Synpcc7942_0830 0.16 +0.2 824,180 - asnC Synpcc7942_0830 0.17 -1.1 824,181 - asnC Synpcc7942_0830 0.17 +1.0 824,187 + asnC Synpcc7942_0830 0.18 +2.4 824,194 + asnC Synpcc7942_0830 0.18 -0.1 824,195 - -1.7 824,195 - asnC Synpcc7942_0830 0.18 +1.6 824,201 - asnC Synpcc7942_0830 0.19 +1.4 824,207 - asnC Synpcc7942_0830 0.19 -0.1 824,216 - asnC Synpcc7942_0830 0.20 +1.2 824,242 + asnC Synpcc7942_0830 0.22 +0.6 824,249 - asnC Synpcc7942_0830 0.22 +2.3 824,310 + asnC Synpcc7942_0830 0.26 -0.0 824,330 - asnC Synpcc7942_0830 0.28 -1.4 824,330 - asnC Synpcc7942_0830 0.28 +0.1 824,384 + asnC Synpcc7942_0830 0.32 +0.2 824,384 + asnC Synpcc7942_0830 0.32 -0.7 824,392 - asnC Synpcc7942_0830 0.32 -1.5 824,460 + asnC Synpcc7942_0830 0.37 +1.4 824,468 - asnC Synpcc7942_0830 0.38 +1.3 824,469 + asnC Synpcc7942_0830 0.38 +0.8 824,489 + asnC Synpcc7942_0830 0.39 +0.8 824,489 + asnC Synpcc7942_0830 0.39 -0.2 824,492 - asnC Synpcc7942_0830 0.40 +0.2 824,497 - asnC Synpcc7942_0830 0.40 -0.9 824,497 - asnC Synpcc7942_0830 0.40 +2.0 824,497 - asnC Synpcc7942_0830 0.40 +1.3 824,497 - asnC Synpcc7942_0830 0.40 +1.5 824,549 + asnC Synpcc7942_0830 0.44 +1.1 824,568 + asnC Synpcc7942_0830 0.45 +0.5 824,576 - asnC Synpcc7942_0830 0.46 +1.7 824,580 + asnC Synpcc7942_0830 0.46 +2.9 824,588 - asnC Synpcc7942_0830 0.47 +1.0 824,604 + asnC Synpcc7942_0830 0.48 +0.7 824,604 + asnC Synpcc7942_0830 0.48 -0.1 824,605 + asnC Synpcc7942_0830 0.48 +2.1 824,612 + asnC Synpcc7942_0830 0.48 +0.2 824,612 - asnC Synpcc7942_0830 0.48 +1.6 824,612 - asnC Synpcc7942_0830 0.48 +0.5 824,612 - asnC Synpcc7942_0830 0.48 -0.8 824,613 - asnC Synpcc7942_0830 0.48 +1.1 824,613 - -1.1 824,620 - asnC Synpcc7942_0830 0.49 -0.5 824,620 - asnC Synpcc7942_0830 0.49 +0.8 824,640 + asnC Synpcc7942_0830 0.50 +0.2 824,648 - asnC Synpcc7942_0830 0.51 -1.4 824,648 - asnC Synpcc7942_0830 0.51 -0.8 824,667 + asnC Synpcc7942_0830 0.52 +0.9 824,668 - asnC Synpcc7942_0830 0.52 +0.9 824,675 - asnC Synpcc7942_0830 0.53 +0.7 824,713 + asnC Synpcc7942_0830 0.56 +0.7 824,721 - asnC Synpcc7942_0830 0.56 +1.2 824,721 - asnC Synpcc7942_0830 0.56 +0.4 824,756 - asnC Synpcc7942_0830 0.59 +1.4 824,779 + asnC Synpcc7942_0830 0.60 -0.5 824,788 - asnC Synpcc7942_0830 0.61 +1.6 824,815 + asnC Synpcc7942_0830 0.63 +1.4 824,815 + asnC Synpcc7942_0830 0.63 +0.5 824,823 - asnC Synpcc7942_0830 0.63 -0.6 824,836 + asnC Synpcc7942_0830 0.64 +0.9 824,844 - asnC Synpcc7942_0830 0.65 -0.1 824,863 + asnC Synpcc7942_0830 0.66 +0.6 824,871 - asnC Synpcc7942_0830 0.67 +3.5 824,930 - asnC Synpcc7942_0830 0.71 -0.1 824,966 - asnC Synpcc7942_0830 0.74 +0.6 824,979 - asnC Synpcc7942_0830 0.75 +0.9 825,036 + asnC Synpcc7942_0830 0.79 +1.3 825,036 + asnC Synpcc7942_0830 0.79 +0.2 825,044 - asnC Synpcc7942_0830 0.79 -0.9 825,087 - asnC Synpcc7942_0830 0.82 +0.5 825,088 - asnC Synpcc7942_0830 0.83 +0.5 825,115 - asnC Synpcc7942_0830 0.84 -0.6 825,142 - asnC Synpcc7942_0830 0.86 +0.7 825,142 - asnC Synpcc7942_0830 0.86 -1.1 825,169 + asnC Synpcc7942_0830 0.88 +0.0 825,188 + asnC Synpcc7942_0830 0.90 +2.0 825,188 + asnC Synpcc7942_0830 0.90 -1.1 825,239 + -1.0 825,239 + -1.7 825,240 - +0.9 825,253 + +0.0 825,268 + +0.3 825,268 + -0.1 825,318 - +2.1 825,340 + +2.1 825,348 - +0.1 825,378 - -1.5 825,378 - +0.2 825,378 - +0.5 825,400 - +0.5 825,409 - +0.7 825,409 - -0.1 825,413 + -1.7 825,470 - Synpcc7942_0831 0.11 -2.3 825,521 - Synpcc7942_0831 0.20 +0.5 825,535 + Synpcc7942_0831 0.22 +0.5 825,539 + Synpcc7942_0831 0.23 +0.1 825,545 + Synpcc7942_0831 0.24 -1.2 825,545 + Synpcc7942_0831 0.24 +1.1 825,545 + Synpcc7942_0831 0.24 -0.6 825,553 - Synpcc7942_0831 0.25 -0.2 825,553 - Synpcc7942_0831 0.25 +1.1 825,553 - Synpcc7942_0831 0.25 +0.7 825,553 - Synpcc7942_0831 0.25 +1.2 825,562 + Synpcc7942_0831 0.26 +1.4 825,564 + Synpcc7942_0831 0.27 +1.5 825,564 + Synpcc7942_0831 0.27 +1.5 825,564 + Synpcc7942_0831 0.27 -0.5 825,564 + Synpcc7942_0831 0.27 -0.4 825,570 + Synpcc7942_0831 0.28 +1.9 825,578 - Synpcc7942_0831 0.29 -0.0 825,578 - Synpcc7942_0831 0.29 -0.4 825,689 - Synpcc7942_0831 0.47 +1.0 825,739 + Synpcc7942_0831 0.56 +0.6 825,740 + Synpcc7942_0831 0.56 -0.1 825,747 - Synpcc7942_0831 0.57 +0.6 825,747 - Synpcc7942_0831 0.57 +0.5 825,781 + Synpcc7942_0831 0.63 +0.3 825,802 + Synpcc7942_0831 0.66 +0.6 825,823 + Synpcc7942_0831 0.70 +2.0 825,823 + Synpcc7942_0831 0.70 +1.5 825,831 - Synpcc7942_0831 0.71 -0.3 825,831 - Synpcc7942_0831 0.71 +0.1 825,870 + Synpcc7942_0831 0.77 +2.6 825,897 - Synpcc7942_0831 0.82 +1.9 825,902 + Synpcc7942_0831 0.83 -1.2 825,938 + Synpcc7942_0831 0.89 +0.4 825,938 + Synpcc7942_0831 0.89 +1.4 825,938 + Synpcc7942_0831 0.89 +0.7 825,946 - -1.7 825,946 - +1.3 825,951 - -0.4 825,951 - -1.1 825,958 + +0.2 825,958 - -2.7 825,966 - +0.7 825,969 + +0.9 825,976 - -0.3 826,017 + +0.7 826,042 + +0.2 826,053 + -2.1 826,054 + +0.9 826,061 - -0.8 826,076 + +1.8 826,084 - +0.7 826,158 + +1.7 826,172 - -1.1 826,202 - -0.4 826,221 - +3.9 826,247 - +1.4
Or see this region's nucleotide sequence