Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3506 and Pf1N1B4_3507 overlap by 1 nucleotides Pf1N1B4_3507 and Pf1N1B4_3508 are separated by 128 nucleotides
Pf1N1B4_3506 - Cysteine synthase B (EC 2.5.1.47), at 3,911,730 to 3,912,632
_3506
Pf1N1B4_3507 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939, at 3,912,632 to 3,913,984
_3507
Pf1N1B4_3508 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 3,914,113 to 3,916,356
_3508
Position (kb)
3912
3913
3914 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3911.724 kb on + strand at 3911.724 kb on + strand at 3911.995 kb on - strand, within Pf1N1B4_3506 at 3912.038 kb on + strand, within Pf1N1B4_3506 at 3912.192 kb on + strand, within Pf1N1B4_3506 at 3912.192 kb on + strand, within Pf1N1B4_3506 at 3912.192 kb on + strand, within Pf1N1B4_3506 at 3912.193 kb on - strand at 3912.197 kb on + strand, within Pf1N1B4_3506 at 3912.197 kb on + strand, within Pf1N1B4_3506 at 3912.294 kb on + strand, within Pf1N1B4_3506 at 3912.294 kb on + strand, within Pf1N1B4_3506 at 3912.387 kb on + strand, within Pf1N1B4_3506 at 3912.387 kb on + strand, within Pf1N1B4_3506 at 3912.387 kb on + strand, within Pf1N1B4_3506 at 3912.387 kb on + strand, within Pf1N1B4_3506 at 3912.387 kb on + strand, within Pf1N1B4_3506 at 3912.388 kb on - strand at 3912.402 kb on + strand, within Pf1N1B4_3506 at 3912.402 kb on + strand, within Pf1N1B4_3506 at 3912.402 kb on + strand, within Pf1N1B4_3506 at 3912.403 kb on - strand, within Pf1N1B4_3506 at 3912.403 kb on - strand, within Pf1N1B4_3506 at 3912.403 kb on - strand, within Pf1N1B4_3506 at 3912.460 kb on + strand, within Pf1N1B4_3506 at 3912.460 kb on + strand, within Pf1N1B4_3506 at 3912.460 kb on + strand, within Pf1N1B4_3506 at 3912.461 kb on - strand, within Pf1N1B4_3506 at 3912.597 kb on + strand at 3912.597 kb on + strand at 3912.597 kb on + strand at 3912.597 kb on + strand at 3913.179 kb on + strand, within Pf1N1B4_3507 at 3913.179 kb on + strand, within Pf1N1B4_3507 at 3913.179 kb on + strand, within Pf1N1B4_3507 at 3913.678 kb on + strand, within Pf1N1B4_3507 at 3913.713 kb on + strand, within Pf1N1B4_3507 at 3913.713 kb on + strand, within Pf1N1B4_3507 at 3913.764 kb on + strand, within Pf1N1B4_3507 at 3913.803 kb on + strand, within Pf1N1B4_3507 at 3913.803 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.841 kb on + strand, within Pf1N1B4_3507 at 3913.842 kb on - strand, within Pf1N1B4_3507 at 3913.930 kb on + strand at 3913.930 kb on + strand at 3913.930 kb on + strand at 3913.982 kb on + strand at 3913.982 kb on + strand at 3913.982 kb on + strand at 3914.095 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 3,911,724 + -0.5 3,911,724 + -0.8 3,911,995 - Pf1N1B4_3506 0.29 -1.7 3,912,038 + Pf1N1B4_3506 0.34 -1.9 3,912,192 + Pf1N1B4_3506 0.51 -2.5 3,912,192 + Pf1N1B4_3506 0.51 -2.6 3,912,192 + Pf1N1B4_3506 0.51 -0.1 3,912,193 - -0.7 3,912,197 + Pf1N1B4_3506 0.52 -0.5 3,912,197 + Pf1N1B4_3506 0.52 -1.3 3,912,294 + Pf1N1B4_3506 0.62 -1.1 3,912,294 + Pf1N1B4_3506 0.62 -1.4 3,912,387 + Pf1N1B4_3506 0.73 -1.1 3,912,387 + Pf1N1B4_3506 0.73 -1.7 3,912,387 + Pf1N1B4_3506 0.73 -2.5 3,912,387 + Pf1N1B4_3506 0.73 -1.7 3,912,387 + Pf1N1B4_3506 0.73 -2.1 3,912,388 - -1.1 3,912,402 + Pf1N1B4_3506 0.74 -1.5 3,912,402 + Pf1N1B4_3506 0.74 -3.1 3,912,402 + Pf1N1B4_3506 0.74 +0.2 3,912,403 - Pf1N1B4_3506 0.75 -1.5 3,912,403 - Pf1N1B4_3506 0.75 -1.7 3,912,403 - Pf1N1B4_3506 0.75 -0.1 3,912,460 + Pf1N1B4_3506 0.81 -3.3 3,912,460 + Pf1N1B4_3506 0.81 -2.1 3,912,460 + Pf1N1B4_3506 0.81 -2.5 3,912,461 - Pf1N1B4_3506 0.81 -1.7 3,912,597 + -1.7 3,912,597 + -2.7 3,912,597 + -1.5 3,912,597 + -3.1 3,913,179 + Pf1N1B4_3507 0.40 +1.3 3,913,179 + Pf1N1B4_3507 0.40 +0.2 3,913,179 + Pf1N1B4_3507 0.40 -0.1 3,913,678 + Pf1N1B4_3507 0.77 +1.5 3,913,713 + Pf1N1B4_3507 0.80 +1.7 3,913,713 + Pf1N1B4_3507 0.80 +1.3 3,913,764 + Pf1N1B4_3507 0.84 +1.3 3,913,803 + Pf1N1B4_3507 0.87 +2.2 3,913,803 + Pf1N1B4_3507 0.87 +1.2 3,913,841 + Pf1N1B4_3507 0.89 +1.5 3,913,841 + Pf1N1B4_3507 0.89 +1.4 3,913,841 + Pf1N1B4_3507 0.89 +1.8 3,913,841 + Pf1N1B4_3507 0.89 +1.9 3,913,841 + Pf1N1B4_3507 0.89 +1.0 3,913,841 + Pf1N1B4_3507 0.89 +1.2 3,913,841 + Pf1N1B4_3507 0.89 +1.6 3,913,841 + Pf1N1B4_3507 0.89 +1.1 3,913,841 + Pf1N1B4_3507 0.89 +0.9 3,913,841 + Pf1N1B4_3507 0.89 +0.6 3,913,841 + Pf1N1B4_3507 0.89 -0.1 3,913,841 + Pf1N1B4_3507 0.89 +1.0 3,913,841 + Pf1N1B4_3507 0.89 +0.6 3,913,841 + Pf1N1B4_3507 0.89 +0.2 3,913,841 + Pf1N1B4_3507 0.89 +1.1 3,913,841 + Pf1N1B4_3507 0.89 +1.1 3,913,841 + Pf1N1B4_3507 0.89 +1.1 3,913,841 + Pf1N1B4_3507 0.89 +0.5 3,913,841 + Pf1N1B4_3507 0.89 +0.1 3,913,841 + Pf1N1B4_3507 0.89 +2.2 3,913,841 + Pf1N1B4_3507 0.89 +3.0 3,913,841 + Pf1N1B4_3507 0.89 +1.2 3,913,841 + Pf1N1B4_3507 0.89 +0.9 3,913,841 + Pf1N1B4_3507 0.89 +2.0 3,913,841 + Pf1N1B4_3507 0.89 +1.2 3,913,841 + Pf1N1B4_3507 0.89 +0.9 3,913,841 + Pf1N1B4_3507 0.89 +0.5 3,913,841 + Pf1N1B4_3507 0.89 +1.4 3,913,841 + Pf1N1B4_3507 0.89 +0.6 3,913,841 + Pf1N1B4_3507 0.89 +1.5 3,913,841 + Pf1N1B4_3507 0.89 +1.9 3,913,841 + Pf1N1B4_3507 0.89 +1.5 3,913,841 + Pf1N1B4_3507 0.89 +1.5 3,913,841 + Pf1N1B4_3507 0.89 +1.1 3,913,841 + Pf1N1B4_3507 0.89 +1.6 3,913,841 + Pf1N1B4_3507 0.89 +0.5 3,913,841 + Pf1N1B4_3507 0.89 +0.7 3,913,841 + Pf1N1B4_3507 0.89 +2.9 3,913,841 + Pf1N1B4_3507 0.89 +0.8 3,913,841 + Pf1N1B4_3507 0.89 +2.0 3,913,841 + Pf1N1B4_3507 0.89 +0.5 3,913,841 + Pf1N1B4_3507 0.89 +1.2 3,913,841 + Pf1N1B4_3507 0.89 +0.5 3,913,841 + Pf1N1B4_3507 0.89 +1.1 3,913,841 + Pf1N1B4_3507 0.89 +0.2 3,913,841 + Pf1N1B4_3507 0.89 +1.8 3,913,841 + -1.7 3,913,841 + Pf1N1B4_3507 0.89 -0.6 3,913,841 + Pf1N1B4_3507 0.89 +1.2 3,913,841 + Pf1N1B4_3507 0.89 +1.0 3,913,841 + Pf1N1B4_3507 0.89 -0.7 3,913,841 + Pf1N1B4_3507 0.89 +1.7 3,913,841 + Pf1N1B4_3507 0.89 +1.7 3,913,841 + Pf1N1B4_3507 0.89 +0.5 3,913,841 + Pf1N1B4_3507 0.89 +0.2 3,913,842 - Pf1N1B4_3507 0.89 -0.1 3,913,930 + +1.9 3,913,930 + +1.6 3,913,930 + +1.2 3,913,982 + +1.7 3,913,982 + +1.3 3,913,982 + +0.6 3,914,095 + +0.2
Or see this region's nucleotide sequence