Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3427

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3426 and Pf1N1B4_3427 are separated by 969 nucleotidesPf1N1B4_3427 and Pf1N1B4_3428 are separated by 644 nucleotides Pf1N1B4_3426 - McrBC 5-methylcytosine restriction system component, at 3,816,823 to 3,818,124 _3426 Pf1N1B4_3427 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 3,819,094 to 3,820,344 _3427 Pf1N1B4_3428 - putative secreted protein, at 3,820,989 to 3,821,261 _3428 Position (kb) 3819 3820 3821Strain fitness (log2 ratio) -2 -1 0 1 2at 3818.183 kb on + strandat 3818.184 kb on - strandat 3818.299 kb on + strandat 3818.299 kb on + strandat 3818.299 kb on + strandat 3818.299 kb on + strandat 3818.299 kb on + strandat 3818.300 kb on - strandat 3818.300 kb on - strandat 3818.300 kb on - strandat 3818.380 kb on + strandat 3818.380 kb on + strandat 3818.380 kb on + strandat 3818.381 kb on - strandat 3818.381 kb on - strandat 3818.381 kb on - strandat 3818.381 kb on - strandat 3818.381 kb on - strandat 3818.429 kb on + strandat 3818.429 kb on + strandat 3818.450 kb on + strandat 3818.450 kb on + strandat 3818.451 kb on - strandat 3818.451 kb on - strandat 3818.451 kb on - strandat 3818.451 kb on - strandat 3818.503 kb on + strandat 3818.503 kb on + strandat 3818.503 kb on + strandat 3818.503 kb on + strandat 3818.503 kb on + strandat 3818.503 kb on + strandat 3818.504 kb on - strandat 3818.504 kb on - strandat 3818.504 kb on - strandat 3818.504 kb on - strandat 3818.561 kb on + strandat 3818.561 kb on + strandat 3818.562 kb on - strandat 3818.562 kb on - strandat 3818.562 kb on - strandat 3818.562 kb on - strandat 3818.581 kb on + strandat 3818.581 kb on + strandat 3818.582 kb on - strandat 3818.621 kb on - strandat 3818.653 kb on + strandat 3818.653 kb on + strandat 3818.654 kb on - strandat 3818.727 kb on + strandat 3818.727 kb on + strandat 3818.727 kb on + strandat 3818.727 kb on + strandat 3818.728 kb on - strandat 3818.728 kb on - strandat 3818.728 kb on - strandat 3818.728 kb on - strandat 3818.728 kb on - strandat 3818.741 kb on + strandat 3818.741 kb on + strandat 3818.745 kb on + strandat 3818.745 kb on + strandat 3818.745 kb on + strandat 3818.745 kb on + strandat 3818.745 kb on + strandat 3818.745 kb on + strandat 3818.746 kb on - strandat 3818.746 kb on - strandat 3818.749 kb on - strandat 3818.773 kb on + strandat 3818.773 kb on + strandat 3818.774 kb on - strandat 3818.774 kb on - strandat 3818.774 kb on - strandat 3818.774 kb on - strandat 3818.774 kb on - strandat 3818.774 kb on - strandat 3818.785 kb on - strandat 3818.814 kb on + strandat 3818.814 kb on + strandat 3818.814 kb on + strandat 3818.814 kb on + strandat 3818.815 kb on - strandat 3818.815 kb on - strandat 3818.815 kb on - strandat 3818.815 kb on - strandat 3818.815 kb on - strandat 3818.872 kb on + strandat 3818.888 kb on + strandat 3818.909 kb on - strandat 3818.909 kb on - strandat 3818.909 kb on - strandat 3818.909 kb on - strandat 3818.909 kb on - strandat 3818.947 kb on + strandat 3818.965 kb on + strandat 3818.995 kb on + strandat 3818.995 kb on + strandat 3819.095 kb on + strandat 3820.460 kb on - strandat 3820.460 kb on - strandat 3820.460 kb on - strandat 3820.460 kb on - strandat 3820.602 kb on - strandat 3820.602 kb on - strandat 3820.604 kb on - strandat 3820.604 kb on - strandat 3820.903 kb on + strandat 3820.903 kb on + strandat 3820.903 kb on + strandat 3820.909 kb on + strandat 3820.948 kb on + strandat 3820.948 kb on + strandat 3820.948 kb on + strandat 3820.948 kb on + strandat 3820.948 kb on + strandat 3820.948 kb on + strandat 3820.948 kb on + strandat 3820.948 kb on + strandat 3820.948 kb on + strandat 3820.948 kb on + strandat 3820.948 kb on + strandat 3820.949 kb on - strandat 3820.949 kb on - strandat 3820.949 kb on - strandat 3820.959 kb on + strandat 3820.959 kb on + strandat 3820.959 kb on + strandat 3820.959 kb on + strandat 3820.959 kb on + strandat 3820.959 kb on + strandat 3821.010 kb on + strandat 3821.010 kb on + strandat 3821.010 kb on + strandat 3821.011 kb on - strandat 3821.268 kb on - strandat 3821.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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3,818,183 + -0.9
3,818,184 - -0.3
3,818,299 + -1.2
3,818,299 + -0.5
3,818,299 + -1.3
3,818,299 + +0.5
3,818,299 + -0.8
3,818,300 - +0.2
3,818,300 - -0.1
3,818,300 - -1.1
3,818,380 + +0.3
3,818,380 + +0.3
3,818,380 + +0.3
3,818,381 - +1.9
3,818,381 - +0.5
3,818,381 - +0.3
3,818,381 - +0.3
3,818,381 - +0.5
3,818,429 + +1.9
3,818,429 + +0.5
3,818,450 + -1.7
3,818,450 + +0.2
3,818,451 - +1.2
3,818,451 - -0.9
3,818,451 - +1.5
3,818,451 - -0.1
3,818,503 + +0.9
3,818,503 + -0.1
3,818,503 + +0.5
3,818,503 + +1.3
3,818,503 + -0.4
3,818,503 + +2.2
3,818,504 - -1.1
3,818,504 - -0.3
3,818,504 - -1.3
3,818,504 - -0.4
3,818,561 + +0.2
3,818,561 + +1.5
3,818,562 - -0.5
3,818,562 - -0.5
3,818,562 - +0.3
3,818,562 - -1.1
3,818,581 + -1.1
3,818,581 + +0.9
3,818,582 - -0.5
3,818,621 - -0.1
3,818,653 + +0.3
3,818,653 + -2.7
3,818,654 - -0.4
3,818,727 + -0.7
3,818,727 + +1.5
3,818,727 + -0.7
3,818,727 + +0.3
3,818,728 - -1.7
3,818,728 - -0.7
3,818,728 - -0.1
3,818,728 - -0.1
3,818,728 - -0.5
3,818,741 + -0.1
3,818,741 + -0.1
3,818,745 + -1.9
3,818,745 + -0.1
3,818,745 + -1.4
3,818,745 + -0.3
3,818,745 + +0.6
3,818,745 + -1.1
3,818,746 - -1.4
3,818,746 - +1.2
3,818,749 - -0.2
3,818,773 + +1.0
3,818,773 + +1.5
3,818,774 - -1.3
3,818,774 - -1.3
3,818,774 - +1.1
3,818,774 - -1.7
3,818,774 - -0.7
3,818,774 - -0.1
3,818,785 - -2.1
3,818,814 + +0.7
3,818,814 + -0.5
3,818,814 + +0.9
3,818,814 + -0.1
3,818,815 - +0.9
3,818,815 - +0.9
3,818,815 - -1.1
3,818,815 - +0.1
3,818,815 - -1.7
3,818,872 + -1.1
3,818,888 + +0.9
3,818,909 - -1.1
3,818,909 - +0.5
3,818,909 - +0.5
3,818,909 - +0.7
3,818,909 - +0.7
3,818,947 + -1.3
3,818,965 + -1.5
3,818,995 + +0.5
3,818,995 + -0.1
3,819,095 + +0.6
3,820,460 - +0.6
3,820,460 - -0.1
3,820,460 - -0.8
3,820,460 - +0.9
3,820,602 - -0.9
3,820,602 - +0.1
3,820,604 - -1.5
3,820,604 - -0.1
3,820,903 + +0.7
3,820,903 + +0.6
3,820,903 + +0.3
3,820,909 + +0.9
3,820,948 + -0.7
3,820,948 + +2.2
3,820,948 + +2.5
3,820,948 + +1.3
3,820,948 + -0.4
3,820,948 + -0.1
3,820,948 + +0.5
3,820,948 + +1.9
3,820,948 + +2.5
3,820,948 + +0.4
3,820,948 + -0.7
3,820,949 - -0.1
3,820,949 - -0.1
3,820,949 - -1.9
3,820,959 + +0.9
3,820,959 + +2.1
3,820,959 + -0.4
3,820,959 + -0.1
3,820,959 + -1.3
3,820,959 + +0.9
3,821,010 + -0.1
3,821,010 + +1.5
3,821,010 + +0.9
3,821,011 - -0.6
3,821,268 - +0.9
3,821,268 - +2.2

Or see this region's nucleotide sequence