Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_130 and Pf1N1B4_131 are separated by 152 nucleotides Pf1N1B4_131 and Pf1N1B4_132 are separated by 326 nucleotides Pf1N1B4_132 and Pf1N1B4_133 are separated by 144 nucleotides Pf1N1B4_133 and Pf1N1B4_134 are separated by 301 nucleotides
Pf1N1B4_130 - DNA-binding response regulator, LuxR family, at 144,152 to 144,772
_130
Pf1N1B4_131 - hypothetical protein, at 144,925 to 145,374
_131
Pf1N1B4_132 - L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis, at 145,701 to 147,038
_132
Pf1N1B4_133 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis, at 147,183 to 147,665
_133
Pf1N1B4_134 - pyoverdine-specific efflux macA-like protein, at 147,967 to 149,127
_134
Position (kb) 145
146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 144.776 kb on - strand at 144.776 kb on - strand at 144.899 kb on + strand at 145.121 kb on + strand, within Pf1N1B4_131 at 145.121 kb on + strand, within Pf1N1B4_131 at 145.121 kb on + strand at 145.121 kb on + strand, within Pf1N1B4_131 at 145.122 kb on - strand, within Pf1N1B4_131 at 145.122 kb on - strand, within Pf1N1B4_131 at 145.122 kb on - strand, within Pf1N1B4_131 at 145.233 kb on - strand, within Pf1N1B4_131 at 145.246 kb on - strand, within Pf1N1B4_131 at 145.353 kb on + strand at 145.447 kb on + strand at 145.475 kb on + strand at 145.475 kb on + strand at 145.476 kb on - strand at 145.476 kb on - strand at 145.486 kb on + strand at 145.487 kb on - strand at 145.487 kb on - strand at 145.487 kb on - strand at 145.487 kb on - strand at 145.487 kb on - strand at 145.702 kb on + strand at 145.703 kb on - strand at 145.768 kb on + strand at 145.768 kb on + strand at 145.769 kb on - strand at 145.861 kb on + strand, within Pf1N1B4_132 at 145.861 kb on + strand, within Pf1N1B4_132 at 145.861 kb on + strand, within Pf1N1B4_132 at 145.861 kb on + strand at 145.861 kb on + strand, within Pf1N1B4_132 at 145.861 kb on + strand, within Pf1N1B4_132 at 145.862 kb on - strand, within Pf1N1B4_132 at 145.862 kb on - strand, within Pf1N1B4_132 at 145.862 kb on - strand at 145.900 kb on + strand at 145.901 kb on - strand, within Pf1N1B4_132 at 145.931 kb on - strand, within Pf1N1B4_132 at 146.149 kb on + strand, within Pf1N1B4_132 at 146.149 kb on + strand, within Pf1N1B4_132 at 146.149 kb on + strand, within Pf1N1B4_132 at 146.149 kb on + strand, within Pf1N1B4_132 at 146.185 kb on + strand, within Pf1N1B4_132 at 146.186 kb on - strand, within Pf1N1B4_132 at 146.186 kb on - strand, within Pf1N1B4_132 at 146.713 kb on + strand, within Pf1N1B4_132 at 146.713 kb on + strand, within Pf1N1B4_132 at 146.714 kb on - strand, within Pf1N1B4_132 at 146.731 kb on + strand, within Pf1N1B4_132 at 146.732 kb on - strand, within Pf1N1B4_132 at 146.782 kb on + strand, within Pf1N1B4_132 at 147.421 kb on + strand, within Pf1N1B4_133 at 147.422 kb on - strand at 147.442 kb on - strand at 147.442 kb on - strand, within Pf1N1B4_133 at 147.442 kb on - strand, within Pf1N1B4_133 at 147.442 kb on - strand, within Pf1N1B4_133 at 147.586 kb on - strand, within Pf1N1B4_133 at 147.616 kb on - strand, within Pf1N1B4_133 at 147.635 kb on - strand at 147.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 144,776 - -0.4 144,776 - +1.4 144,899 + +0.8 145,121 + Pf1N1B4_131 0.44 +1.4 145,121 + Pf1N1B4_131 0.44 -0.2 145,121 + +0.2 145,121 + Pf1N1B4_131 0.44 -0.8 145,122 - Pf1N1B4_131 0.44 +2.1 145,122 - Pf1N1B4_131 0.44 -0.2 145,122 - Pf1N1B4_131 0.44 -0.2 145,233 - Pf1N1B4_131 0.68 -2.0 145,246 - Pf1N1B4_131 0.71 +0.4 145,353 + -0.8 145,447 + -0.2 145,475 + -0.8 145,475 + +1.4 145,476 - -0.2 145,476 - +0.2 145,486 + -0.6 145,487 - +0.4 145,487 - -1.2 145,487 - +1.1 145,487 - -0.7 145,487 - +0.9 145,702 + +0.3 145,703 - +2.8 145,768 + -0.2 145,768 + +1.0 145,769 - -0.1 145,861 + Pf1N1B4_132 0.12 +2.4 145,861 + Pf1N1B4_132 0.12 +2.1 145,861 + Pf1N1B4_132 0.12 +0.4 145,861 + +1.4 145,861 + Pf1N1B4_132 0.12 +0.4 145,861 + Pf1N1B4_132 0.12 +1.4 145,862 - Pf1N1B4_132 0.12 -1.0 145,862 - Pf1N1B4_132 0.12 -0.2 145,862 - -0.2 145,900 + +1.8 145,901 - Pf1N1B4_132 0.15 -1.5 145,931 - Pf1N1B4_132 0.17 -0.2 146,149 + Pf1N1B4_132 0.33 -0.4 146,149 + Pf1N1B4_132 0.33 -3.0 146,149 + Pf1N1B4_132 0.33 +1.1 146,149 + Pf1N1B4_132 0.33 -0.2 146,185 + Pf1N1B4_132 0.36 +1.0 146,186 - Pf1N1B4_132 0.36 +1.4 146,186 - Pf1N1B4_132 0.36 +0.5 146,713 + Pf1N1B4_132 0.76 +0.2 146,713 + Pf1N1B4_132 0.76 +0.8 146,714 - Pf1N1B4_132 0.76 +2.6 146,731 + Pf1N1B4_132 0.77 +1.2 146,732 - Pf1N1B4_132 0.77 +0.4 146,782 + Pf1N1B4_132 0.81 +1.2 147,421 + Pf1N1B4_133 0.49 -0.4 147,422 - -0.2 147,442 - -1.2 147,442 - Pf1N1B4_133 0.54 +0.8 147,442 - Pf1N1B4_133 0.54 -0.1 147,442 - Pf1N1B4_133 0.54 +2.2 147,586 - Pf1N1B4_133 0.83 -0.2 147,616 - Pf1N1B4_133 0.90 -0.9 147,635 - -0.2 147,835 + +0.4
Or see this region's nucleotide sequence