Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3640

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3639 and Ac3H11_3640 are separated by 159 nucleotidesAc3H11_3640 and Ac3H11_3641 are separated by 42 nucleotides Ac3H11_3639 - FIG00537048: hypothetical protein, at 197,714 to 198,541 _3639 Ac3H11_3640 - Lysophospholipase (EC 3.1.1.5), at 198,701 to 200,005 _3640 Ac3H11_3641 - DNA mismatch repair protein MutS, at 200,048 to 202,666 _3641 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -1 0 1 2at 197.715 kb on + strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.716 kb on - strandat 197.716 kb on - strandat 197.716 kb on - strandat 197.716 kb on - strandat 197.719 kb on + strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.880 kb on + strand, within Ac3H11_3639at 197.880 kb on + strand, within Ac3H11_3639at 197.880 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.938 kb on - strand, within Ac3H11_3639at 197.938 kb on - strand, within Ac3H11_3639at 198.072 kb on + strand, within Ac3H11_3639at 198.096 kb on + strand, within Ac3H11_3639at 198.097 kb on - strand, within Ac3H11_3639at 198.097 kb on - strand, within Ac3H11_3639at 198.138 kb on + strand, within Ac3H11_3639at 198.138 kb on + strand, within Ac3H11_3639at 198.139 kb on - strand, within Ac3H11_3639at 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.535 kb on - strandat 198.581 kb on + strandat 198.752 kb on + strandat 198.753 kb on - strandat 198.753 kb on - strandat 199.062 kb on - strand, within Ac3H11_3640at 199.074 kb on - strand, within Ac3H11_3640at 199.074 kb on - strand, within Ac3H11_3640at 199.074 kb on - strand, within Ac3H11_3640at 199.169 kb on + strand, within Ac3H11_3640at 199.169 kb on + strand, within Ac3H11_3640at 199.170 kb on - strand, within Ac3H11_3640at 199.260 kb on - strand, within Ac3H11_3640at 199.260 kb on - strand, within Ac3H11_3640at 199.280 kb on + strand, within Ac3H11_3640at 199.280 kb on + strand, within Ac3H11_3640at 199.280 kb on + strand, within Ac3H11_3640at 199.281 kb on - strand, within Ac3H11_3640at 199.320 kb on - strand, within Ac3H11_3640at 199.445 kb on + strand, within Ac3H11_3640at 199.706 kb on + strand, within Ac3H11_3640at 199.706 kb on + strand, within Ac3H11_3640at 199.775 kb on + strand, within Ac3H11_3640at 199.775 kb on + strand, within Ac3H11_3640at 199.775 kb on + strand, within Ac3H11_3640at 199.775 kb on + strand, within Ac3H11_3640at 199.776 kb on - strand, within Ac3H11_3640at 199.776 kb on - strand, within Ac3H11_3640at 199.808 kb on + strand, within Ac3H11_3640at 199.809 kb on - strand, within Ac3H11_3640at 199.809 kb on - strand, within Ac3H11_3640at 199.838 kb on + strand, within Ac3H11_3640at 199.838 kb on + strand, within Ac3H11_3640at 200.074 kb on - strandat 200.298 kb on + strandat 200.299 kb on - strandat 200.299 kb on - strandat 200.424 kb on + strand, within Ac3H11_3641at 200.424 kb on + strand, within Ac3H11_3641at 200.425 kb on - strand, within Ac3H11_3641at 200.742 kb on + strand, within Ac3H11_3641at 200.742 kb on + strand, within Ac3H11_3641at 200.742 kb on + strand, within Ac3H11_3641at 200.743 kb on - strand, within Ac3H11_3641at 200.743 kb on - strand, within Ac3H11_3641at 200.743 kb on - strand, within Ac3H11_3641at 200.743 kb on - strand, within Ac3H11_3641

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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197,715 + +0.8
197,715 + +0.2
197,715 + +0.6
197,715 + +0.3
197,715 + -0.2
197,716 - +0.2
197,716 - +0.4
197,716 - -0.2
197,716 - +0.5
197,719 + +0.3
197,720 - -0.5
197,720 - +0.1
197,720 - +0.4
197,720 - -0.5
197,720 - -0.5
197,720 - -0.4
197,720 - +1.0
197,880 + Ac3H11_3639 0.20 -1.3
197,880 + Ac3H11_3639 0.20 +1.3
197,880 + Ac3H11_3639 0.20 +0.7
197,906 + Ac3H11_3639 0.23 +0.1
197,906 + Ac3H11_3639 0.23 -0.5
197,906 + Ac3H11_3639 0.23 +0.5
197,906 + Ac3H11_3639 0.23 -0.5
197,906 + Ac3H11_3639 0.23 -0.3
197,907 - Ac3H11_3639 0.23 -0.5
197,907 - Ac3H11_3639 0.23 -0.5
197,907 - Ac3H11_3639 0.23 +0.0
197,907 - Ac3H11_3639 0.23 +0.1
197,938 - Ac3H11_3639 0.27 -0.5
197,938 - Ac3H11_3639 0.27 -0.3
198,072 + Ac3H11_3639 0.43 +2.3
198,096 + Ac3H11_3639 0.46 +0.4
198,097 - Ac3H11_3639 0.46 -0.1
198,097 - Ac3H11_3639 0.46 +0.5
198,138 + Ac3H11_3639 0.51 +0.4
198,138 + Ac3H11_3639 0.51 +0.5
198,139 - Ac3H11_3639 0.51 +0.3
198,534 + +0.4
198,534 + -0.0
198,534 + +0.1
198,534 + -0.3
198,534 + -0.1
198,534 + +0.0
198,534 + -0.0
198,534 + +0.3
198,534 + +1.7
198,534 + +0.7
198,535 - -0.4
198,581 + +0.5
198,752 + +0.2
198,753 - +0.8
198,753 - -0.7
199,062 - Ac3H11_3640 0.28 -1.0
199,074 - Ac3H11_3640 0.29 +0.2
199,074 - Ac3H11_3640 0.29 +1.7
199,074 - Ac3H11_3640 0.29 +0.1
199,169 + Ac3H11_3640 0.36 +0.6
199,169 + Ac3H11_3640 0.36 +0.1
199,170 - Ac3H11_3640 0.36 -1.7
199,260 - Ac3H11_3640 0.43 +1.2
199,260 - Ac3H11_3640 0.43 -1.1
199,280 + Ac3H11_3640 0.44 -0.1
199,280 + Ac3H11_3640 0.44 +0.2
199,280 + Ac3H11_3640 0.44 -0.1
199,281 - Ac3H11_3640 0.44 -0.1
199,320 - Ac3H11_3640 0.47 +1.3
199,445 + Ac3H11_3640 0.57 +0.4
199,706 + Ac3H11_3640 0.77 +0.7
199,706 + Ac3H11_3640 0.77 +0.8
199,775 + Ac3H11_3640 0.82 -1.5
199,775 + Ac3H11_3640 0.82 +0.2
199,775 + Ac3H11_3640 0.82 +0.0
199,775 + Ac3H11_3640 0.82 -0.3
199,776 - Ac3H11_3640 0.82 -0.3
199,776 - Ac3H11_3640 0.82 -0.9
199,808 + Ac3H11_3640 0.85 +1.2
199,809 - Ac3H11_3640 0.85 -0.5
199,809 - Ac3H11_3640 0.85 +0.9
199,838 + Ac3H11_3640 0.87 -0.6
199,838 + Ac3H11_3640 0.87 -0.3
200,074 - +0.6
200,298 + -0.6
200,299 - +0.6
200,299 - -0.2
200,424 + Ac3H11_3641 0.14 +0.1
200,424 + Ac3H11_3641 0.14 -0.5
200,425 - Ac3H11_3641 0.14 -0.6
200,742 + Ac3H11_3641 0.26 -0.3
200,742 + Ac3H11_3641 0.26 +0.1
200,742 + Ac3H11_3641 0.26 -0.4
200,743 - Ac3H11_3641 0.27 +0.9
200,743 - Ac3H11_3641 0.27 -0.5
200,743 - Ac3H11_3641 0.27 -0.1
200,743 - Ac3H11_3641 0.27 -0.0

Or see this region's nucleotide sequence