Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2985

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2634 and Ac3H11_2985 are separated by 12 nucleotidesAc3H11_2985 and Ac3H11_2635 are separated by 149 nucleotides Ac3H11_2634 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 918,466 to 919,473 _2634 Ac3H11_2985 - tRNA-Thr-CGT, at 919,486 to 919,558 _2985 Ac3H11_2635 - Response regulator NasT, at 919,708 to 921,024 _2635 Position (kb) 919 920Strain fitness (log2 ratio) -1 0 1 2at 919.469 kb on + strandat 919.483 kb on + strandat 919.483 kb on + strandat 919.484 kb on - strandat 919.493 kb on + strandat 919.812 kb on + strandat 919.812 kb on + strandat 919.812 kb on + strandat 919.813 kb on - strandat 919.813 kb on - strandat 919.813 kb on - strandat 919.813 kb on - strandat 920.472 kb on - strand, within Ac3H11_2635at 920.472 kb on - strand, within Ac3H11_2635

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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919,469 + +0.7
919,483 + -0.8
919,483 + -0.3
919,484 - +1.9
919,493 + -0.7
919,812 + +0.0
919,812 + +1.6
919,812 + +0.0
919,813 - -0.8
919,813 - +0.9
919,813 - -0.4
919,813 - +0.4
920,472 - Ac3H11_2635 0.58 +0.5
920,472 - Ac3H11_2635 0.58 +0.0

Or see this region's nucleotide sequence