Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2078

Experiment: LB, pH6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_2077 and Ac3H11_2078 are separated by 111 nucleotidesAc3H11_2078 and Ac3H11_2079 are separated by 123 nucleotidesAc3H11_2079 and Ac3H11_2080 are separated by 178 nucleotides Ac3H11_2077 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 301,817 to 303,388 _2077 Ac3H11_2078 - D-mannose isomerase (EC 5.3.1.7) (from data), at 303,500 to 304,774 _2078 Ac3H11_2079 - Membrane protein TerC, possibly involved in tellurium resistance, at 304,898 to 305,584 _2079 Ac3H11_2080 - hypothetical protein, at 305,763 to 305,879 _2080 Position (kb) 303 304 305Strain fitness (log2 ratio) -1 0 1at 303.471 kb on + strandat 303.472 kb on - strandat 303.472 kb on - strandat 303.472 kb on - strandat 303.472 kb on - strandat 303.473 kb on + strandat 303.473 kb on + strandat 303.473 kb on + strandat 303.473 kb on + strandat 303.473 kb on + strandat 303.473 kb on + strandat 303.473 kb on + strandat 303.474 kb on - strandat 303.474 kb on - strandat 303.478 kb on - strandat 303.478 kb on - strandat 303.478 kb on - strandat 303.575 kb on + strandat 303.575 kb on + strandat 303.575 kb on + strandat 303.575 kb on + strandat 303.641 kb on + strand, within Ac3H11_2078at 303.642 kb on - strand, within Ac3H11_2078at 303.642 kb on - strand, within Ac3H11_2078at 303.642 kb on - strand, within Ac3H11_2078at 303.861 kb on - strand, within Ac3H11_2078at 303.989 kb on + strand, within Ac3H11_2078at 303.989 kb on + strand, within Ac3H11_2078at 303.989 kb on + strand, within Ac3H11_2078at 303.990 kb on - strand, within Ac3H11_2078at 304.028 kb on + strand, within Ac3H11_2078at 304.048 kb on + strand, within Ac3H11_2078at 304.048 kb on + strand, within Ac3H11_2078at 304.048 kb on + strand, within Ac3H11_2078at 304.049 kb on - strand, within Ac3H11_2078at 304.049 kb on - strand, within Ac3H11_2078at 304.049 kb on - strand, within Ac3H11_2078at 304.049 kb on - strand, within Ac3H11_2078at 304.049 kb on - strand, within Ac3H11_2078at 304.049 kb on - strand, within Ac3H11_2078at 304.049 kb on - strand, within Ac3H11_2078at 304.103 kb on + strand, within Ac3H11_2078at 304.238 kb on + strand, within Ac3H11_2078at 304.239 kb on - strand, within Ac3H11_2078at 304.239 kb on - strand, within Ac3H11_2078at 304.424 kb on + strand, within Ac3H11_2078at 304.424 kb on + strand, within Ac3H11_2078at 304.424 kb on + strand, within Ac3H11_2078at 304.424 kb on + strand, within Ac3H11_2078at 304.425 kb on - strand, within Ac3H11_2078at 304.425 kb on - strand, within Ac3H11_2078at 304.425 kb on - strand, within Ac3H11_2078at 304.428 kb on - strand, within Ac3H11_2078at 304.428 kb on - strand, within Ac3H11_2078at 304.469 kb on + strand, within Ac3H11_2078at 304.469 kb on + strand, within Ac3H11_2078at 304.469 kb on + strand, within Ac3H11_2078at 304.470 kb on - strand, within Ac3H11_2078at 304.470 kb on - strand, within Ac3H11_2078at 304.470 kb on - strand, within Ac3H11_2078at 304.470 kb on - strand, within Ac3H11_2078at 304.470 kb on - strand, within Ac3H11_2078at 304.470 kb on - strand, within Ac3H11_2078at 304.539 kb on - strand, within Ac3H11_2078at 304.550 kb on + strand, within Ac3H11_2078at 304.550 kb on + strand, within Ac3H11_2078at 304.551 kb on - strand, within Ac3H11_2078at 304.551 kb on - strand, within Ac3H11_2078at 304.676 kb on + strandat 304.676 kb on + strandat 304.676 kb on + strandat 304.676 kb on + strandat 304.677 kb on - strandat 304.697 kb on + strandat 304.697 kb on + strandat 304.697 kb on + strandat 304.697 kb on + strandat 304.697 kb on + strandat 304.697 kb on + strandat 304.816 kb on + strandat 304.817 kb on - strandat 304.949 kb on + strandat 304.950 kb on - strandat 304.983 kb on + strand, within Ac3H11_2079at 304.983 kb on + strand, within Ac3H11_2079at 304.983 kb on + strand, within Ac3H11_2079at 304.983 kb on + strand, within Ac3H11_2079at 304.983 kb on + strand, within Ac3H11_2079at 304.983 kb on + strand, within Ac3H11_2079at 304.983 kb on + strand, within Ac3H11_2079at 304.983 kb on + strand, within Ac3H11_2079at 304.984 kb on - strand, within Ac3H11_2079at 304.984 kb on - strand, within Ac3H11_2079at 304.984 kb on - strand, within Ac3H11_2079at 304.984 kb on - strand, within Ac3H11_2079at 304.984 kb on - strand, within Ac3H11_2079at 304.984 kb on - strand, within Ac3H11_2079at 305.010 kb on + strand, within Ac3H11_2079at 305.010 kb on + strand, within Ac3H11_2079at 305.010 kb on + strand, within Ac3H11_2079at 305.011 kb on - strand, within Ac3H11_2079at 305.011 kb on - strand, within Ac3H11_2079at 305.011 kb on - strand, within Ac3H11_2079at 305.011 kb on - strand, within Ac3H11_2079at 305.011 kb on - strand, within Ac3H11_2079at 305.011 kb on - strand, within Ac3H11_2079at 305.011 kb on - strand, within Ac3H11_2079at 305.011 kb on - strand, within Ac3H11_2079at 305.277 kb on + strand, within Ac3H11_2079at 305.277 kb on + strand, within Ac3H11_2079at 305.277 kb on + strand, within Ac3H11_2079at 305.277 kb on + strand, within Ac3H11_2079at 305.277 kb on + strand, within Ac3H11_2079at 305.277 kb on + strand, within Ac3H11_2079at 305.278 kb on - strand, within Ac3H11_2079at 305.278 kb on - strand, within Ac3H11_2079at 305.278 kb on - strand, within Ac3H11_2079at 305.278 kb on - strand, within Ac3H11_2079at 305.278 kb on - strand, within Ac3H11_2079at 305.278 kb on - strand, within Ac3H11_2079at 305.278 kb on - strand, within Ac3H11_2079at 305.278 kb on - strand, within Ac3H11_2079at 305.278 kb on - strand, within Ac3H11_2079at 305.414 kb on + strand, within Ac3H11_2079at 305.415 kb on - strand, within Ac3H11_2079at 305.415 kb on - strand, within Ac3H11_2079at 305.415 kb on - strand, within Ac3H11_2079at 305.576 kb on + strandat 305.577 kb on - strandat 305.577 kb on - strandat 305.577 kb on - strandat 305.577 kb on - strandat 305.577 kb on - strandat 305.577 kb on - strandat 305.585 kb on - strandat 305.585 kb on - strandat 305.600 kb on + strandat 305.600 kb on + strandat 305.600 kb on + strandat 305.600 kb on + strandat 305.600 kb on + strandat 305.600 kb on + strandat 305.601 kb on - strandat 305.601 kb on - strandat 305.665 kb on + strandat 305.665 kb on + strandat 305.666 kb on - strandat 305.666 kb on - strandat 305.666 kb on - strandat 305.693 kb on + strandat 305.693 kb on + strandat 305.693 kb on + strandat 305.693 kb on + strandat 305.693 kb on + strandat 305.694 kb on - strandat 305.703 kb on + strandat 305.704 kb on - strandat 305.704 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
remove
303,471 + -0.1
303,472 - +0.5
303,472 - +0.7
303,472 - +0.4
303,472 - -0.7
303,473 + +0.3
303,473 + +0.6
303,473 + +0.2
303,473 + -0.1
303,473 + -0.3
303,473 + -0.6
303,473 + -1.1
303,474 - +0.5
303,474 - -0.2
303,478 - +0.2
303,478 - -0.7
303,478 - -0.2
303,575 + +0.8
303,575 + -0.2
303,575 + +0.6
303,575 + +0.3
303,641 + Ac3H11_2078 0.11 +0.2
303,642 - Ac3H11_2078 0.11 +1.2
303,642 - Ac3H11_2078 0.11 +0.2
303,642 - Ac3H11_2078 0.11 +0.8
303,861 - Ac3H11_2078 0.28 -1.1
303,989 + Ac3H11_2078 0.38 -0.2
303,989 + Ac3H11_2078 0.38 +0.7
303,989 + Ac3H11_2078 0.38 -0.5
303,990 - Ac3H11_2078 0.38 +0.8
304,028 + Ac3H11_2078 0.41 -0.4
304,048 + Ac3H11_2078 0.43 -0.1
304,048 + Ac3H11_2078 0.43 -0.3
304,048 + Ac3H11_2078 0.43 -0.1
304,049 - Ac3H11_2078 0.43 +0.9
304,049 - Ac3H11_2078 0.43 -0.7
304,049 - Ac3H11_2078 0.43 +0.3
304,049 - Ac3H11_2078 0.43 +0.5
304,049 - Ac3H11_2078 0.43 +0.8
304,049 - Ac3H11_2078 0.43 +0.2
304,049 - Ac3H11_2078 0.43 -1.0
304,103 + Ac3H11_2078 0.47 +0.6
304,238 + Ac3H11_2078 0.58 -0.4
304,239 - Ac3H11_2078 0.58 +0.2
304,239 - Ac3H11_2078 0.58 +0.8
304,424 + Ac3H11_2078 0.72 +1.2
304,424 + Ac3H11_2078 0.72 -0.8
304,424 + Ac3H11_2078 0.72 +1.3
304,424 + Ac3H11_2078 0.72 -0.8
304,425 - Ac3H11_2078 0.73 +0.8
304,425 - Ac3H11_2078 0.73 -0.1
304,425 - Ac3H11_2078 0.73 -0.0
304,428 - Ac3H11_2078 0.73 -0.7
304,428 - Ac3H11_2078 0.73 +0.9
304,469 + Ac3H11_2078 0.76 +0.0
304,469 + Ac3H11_2078 0.76 +0.7
304,469 + Ac3H11_2078 0.76 +0.7
304,470 - Ac3H11_2078 0.76 -1.3
304,470 - Ac3H11_2078 0.76 -0.6
304,470 - Ac3H11_2078 0.76 +0.3
304,470 - Ac3H11_2078 0.76 +0.1
304,470 - Ac3H11_2078 0.76 +0.8
304,470 - Ac3H11_2078 0.76 -0.8
304,539 - Ac3H11_2078 0.81 +0.6
304,550 + Ac3H11_2078 0.82 +0.2
304,550 + Ac3H11_2078 0.82 +0.6
304,551 - Ac3H11_2078 0.82 +0.6
304,551 - Ac3H11_2078 0.82 +0.1
304,676 + +0.2
304,676 + -0.1
304,676 + -0.1
304,676 + -0.7
304,677 - +0.5
304,697 + +0.4
304,697 + +0.2
304,697 + -0.3
304,697 + +0.1
304,697 + +0.1
304,697 + +0.0
304,816 + -0.1
304,817 - -0.1
304,949 + -0.5
304,950 - +0.5
304,983 + Ac3H11_2079 0.12 +0.1
304,983 + Ac3H11_2079 0.12 -0.6
304,983 + Ac3H11_2079 0.12 -0.3
304,983 + Ac3H11_2079 0.12 -0.2
304,983 + Ac3H11_2079 0.12 -0.7
304,983 + Ac3H11_2079 0.12 -1.0
304,983 + Ac3H11_2079 0.12 +1.2
304,983 + Ac3H11_2079 0.12 -0.2
304,984 - Ac3H11_2079 0.13 -0.3
304,984 - Ac3H11_2079 0.13 +0.5
304,984 - Ac3H11_2079 0.13 +0.3
304,984 - Ac3H11_2079 0.13 -1.4
304,984 - Ac3H11_2079 0.13 +0.0
304,984 - Ac3H11_2079 0.13 +0.2
305,010 + Ac3H11_2079 0.16 -0.7
305,010 + Ac3H11_2079 0.16 -0.2
305,010 + Ac3H11_2079 0.16 -0.0
305,011 - Ac3H11_2079 0.16 -0.3
305,011 - Ac3H11_2079 0.16 -0.3
305,011 - Ac3H11_2079 0.16 -0.1
305,011 - Ac3H11_2079 0.16 -0.3
305,011 - Ac3H11_2079 0.16 +0.2
305,011 - Ac3H11_2079 0.16 -0.6
305,011 - Ac3H11_2079 0.16 +0.4
305,011 - Ac3H11_2079 0.16 -0.6
305,277 + Ac3H11_2079 0.55 +0.0
305,277 + Ac3H11_2079 0.55 +1.3
305,277 + Ac3H11_2079 0.55 +0.1
305,277 + Ac3H11_2079 0.55 -0.5
305,277 + Ac3H11_2079 0.55 -0.1
305,277 + Ac3H11_2079 0.55 +0.0
305,278 - Ac3H11_2079 0.55 -0.3
305,278 - Ac3H11_2079 0.55 -0.1
305,278 - Ac3H11_2079 0.55 -0.4
305,278 - Ac3H11_2079 0.55 -0.7
305,278 - Ac3H11_2079 0.55 +0.5
305,278 - Ac3H11_2079 0.55 -1.2
305,278 - Ac3H11_2079 0.55 +0.2
305,278 - Ac3H11_2079 0.55 +0.3
305,278 - Ac3H11_2079 0.55 -0.0
305,414 + Ac3H11_2079 0.75 -0.2
305,415 - Ac3H11_2079 0.75 -0.2
305,415 - Ac3H11_2079 0.75 +0.4
305,415 - Ac3H11_2079 0.75 -0.3
305,576 + -0.5
305,577 - +0.4
305,577 - +0.5
305,577 - -0.3
305,577 - -0.6
305,577 - -0.8
305,577 - +1.0
305,585 - -0.9
305,585 - -0.2
305,600 + +0.1
305,600 + +0.3
305,600 + +0.2
305,600 + +0.1
305,600 + -0.2
305,600 + -0.4
305,601 - -0.1
305,601 - +0.5
305,665 + -0.1
305,665 + +0.6
305,666 - -0.1
305,666 - +0.4
305,666 - +0.3
305,693 + +0.2
305,693 + -0.4
305,693 + +1.1
305,693 + +0.2
305,693 + +0.3
305,694 - +0.2
305,703 + -1.2
305,704 - +0.3
305,704 - +0.1

Or see this region's nucleotide sequence