Experiment: MoYLS4 with Nitrite 0.025mg/mL + Zinc Sulfate 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0621 and DVU0622 are separated by 138 nucleotides DVU0622 and nrfH are separated by 342 nucleotides nrfH and nrfA overlap by 8 nucleotides
DVU0621: DVU0621 - sigma-54 dependent DNA-binding response regulator (TIGR), at 686,695 to 688,092
DVU0621
DVU0622: DVU0622 - sensor histidine kinase/response regulator (TIGR), at 688,231 to 690,729
DVU0622
DVU0624: nrfH - NapC/NirT cytochrome c family protein (TIGR), at 691,072 to 691,551
nrfH
DVU0625: nrfA - cytochrome c nitrite reductase, catalytic subunit NrfA, putative (Shelley Haveman), at 691,544 to 693,118
nrfA
Position (kb) 688
689
690
691 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 687.339 kb on - strand, within DVU0621 at 687.350 kb on + strand, within DVU0621 at 687.394 kb on + strand, within DVU0621 at 687.426 kb on + strand, within DVU0621 at 687.454 kb on - strand, within DVU0621 at 687.469 kb on - strand, within DVU0621 at 687.486 kb on - strand, within DVU0621 at 687.524 kb on - strand, within DVU0621 at 687.551 kb on + strand, within DVU0621 at 687.602 kb on + strand, within DVU0621 at 687.605 kb on + strand, within DVU0621 at 687.661 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.666 kb on + strand, within DVU0621 at 687.674 kb on - strand, within DVU0621 at 687.674 kb on - strand, within DVU0621 at 687.755 kb on - strand, within DVU0621 at 687.802 kb on + strand, within DVU0621 at 687.802 kb on + strand, within DVU0621 at 687.802 kb on + strand, within DVU0621 at 687.802 kb on + strand, within DVU0621 at 687.804 kb on + strand, within DVU0621 at 687.847 kb on + strand, within DVU0621 at 687.855 kb on - strand, within DVU0621 at 687.931 kb on + strand, within DVU0621 at 687.939 kb on - strand, within DVU0621 at 687.962 kb on - strand at 688.011 kb on + strand at 688.148 kb on - strand at 688.210 kb on - strand at 688.212 kb on + strand at 688.220 kb on - strand at 688.250 kb on + strand at 688.281 kb on - strand at 688.295 kb on + strand at 688.410 kb on + strand at 688.410 kb on + strand at 688.464 kb on + strand at 688.517 kb on + strand, within DVU0622 at 688.528 kb on - strand, within DVU0622 at 688.528 kb on - strand, within DVU0622 at 688.603 kb on + strand, within DVU0622 at 688.622 kb on + strand, within DVU0622 at 688.622 kb on + strand, within DVU0622 at 688.622 kb on + strand, within DVU0622 at 688.623 kb on - strand, within DVU0622 at 688.630 kb on - strand, within DVU0622 at 688.657 kb on - strand, within DVU0622 at 688.670 kb on + strand, within DVU0622 at 688.698 kb on + strand, within DVU0622 at 688.784 kb on + strand, within DVU0622 at 688.888 kb on + strand, within DVU0622 at 688.974 kb on + strand, within DVU0622 at 689.016 kb on + strand, within DVU0622 at 689.016 kb on + strand, within DVU0622 at 689.016 kb on + strand, within DVU0622 at 689.016 kb on + strand, within DVU0622 at 689.016 kb on + strand, within DVU0622 at 689.024 kb on - strand, within DVU0622 at 689.024 kb on - strand, within DVU0622 at 689.052 kb on - strand, within DVU0622 at 689.093 kb on + strand, within DVU0622 at 689.101 kb on - strand, within DVU0622 at 689.101 kb on - strand, within DVU0622 at 689.113 kb on - strand, within DVU0622 at 689.125 kb on + strand, within DVU0622 at 689.151 kb on + strand, within DVU0622 at 689.202 kb on + strand, within DVU0622 at 689.202 kb on + strand, within DVU0622 at 689.220 kb on - strand, within DVU0622 at 689.235 kb on + strand, within DVU0622 at 689.235 kb on - strand, within DVU0622 at 689.238 kb on + strand, within DVU0622 at 689.243 kb on - strand, within DVU0622 at 689.409 kb on - strand, within DVU0622 at 689.409 kb on - strand, within DVU0622 at 689.438 kb on + strand, within DVU0622 at 689.438 kb on + strand, within DVU0622 at 689.443 kb on + strand, within DVU0622 at 689.456 kb on - strand, within DVU0622 at 689.456 kb on - strand, within DVU0622 at 689.491 kb on + strand, within DVU0622 at 689.503 kb on + strand, within DVU0622 at 689.506 kb on - strand, within DVU0622 at 689.527 kb on + strand, within DVU0622 at 689.532 kb on + strand, within DVU0622 at 689.550 kb on - strand, within DVU0622 at 689.688 kb on + strand, within DVU0622 at 689.688 kb on + strand, within DVU0622 at 689.696 kb on - strand, within DVU0622 at 689.752 kb on - strand, within DVU0622 at 689.798 kb on + strand, within DVU0622 at 689.849 kb on + strand, within DVU0622 at 689.849 kb on + strand, within DVU0622 at 689.857 kb on - strand, within DVU0622 at 689.857 kb on - strand, within DVU0622 at 689.857 kb on - strand, within DVU0622 at 689.857 kb on - strand, within DVU0622 at 689.857 kb on - strand, within DVU0622 at 689.878 kb on + strand, within DVU0622 at 689.996 kb on + strand, within DVU0622 at 690.025 kb on + strand, within DVU0622 at 690.092 kb on + strand, within DVU0622 at 690.092 kb on + strand, within DVU0622 at 690.138 kb on + strand, within DVU0622 at 690.165 kb on - strand, within DVU0622 at 690.194 kb on + strand, within DVU0622 at 690.275 kb on - strand, within DVU0622 at 690.434 kb on + strand, within DVU0622 at 690.442 kb on - strand, within DVU0622 at 690.565 kb on + strand at 690.579 kb on + strand at 690.614 kb on - strand at 690.652 kb on + strand at 690.652 kb on + strand at 690.660 kb on - strand at 690.674 kb on + strand at 690.679 kb on + strand at 690.714 kb on + strand at 690.722 kb on - strand at 690.722 kb on - strand at 690.722 kb on - strand at 690.727 kb on - strand at 690.966 kb on - strand at 691.029 kb on + strand at 691.213 kb on - strand, within nrfH at 691.221 kb on - strand, within nrfH at 691.311 kb on + strand, within nrfH at 691.337 kb on - strand, within nrfH at 691.402 kb on + strand, within nrfH at 691.415 kb on + strand, within nrfH at 691.424 kb on - strand, within nrfH at 691.424 kb on - strand, within nrfH at 691.431 kb on + strand, within nrfH at 691.465 kb on + strand, within nrfH at 691.481 kb on - strand, within nrfH at 691.498 kb on + strand, within nrfH at 691.498 kb on + strand, within nrfH at 691.503 kb on + strand, within nrfH at 691.506 kb on - strand at 691.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.025mg/mL + Zinc Sulfate 0.1mM remove 687,339 - DVU0621 0.46 +0.2 687,350 + DVU0621 0.47 -0.7 687,394 + DVU0621 0.50 -2.1 687,426 + DVU0621 0.52 -1.2 687,454 - DVU0621 0.54 -0.6 687,469 - DVU0621 0.55 -0.4 687,486 - DVU0621 0.57 -1.2 687,524 - DVU0621 0.59 -0.2 687,551 + DVU0621 0.61 -0.8 687,602 + DVU0621 0.65 -0.3 687,605 + DVU0621 0.65 -0.1 687,661 + DVU0621 0.69 -0.1 687,666 + DVU0621 0.69 -0.3 687,666 + DVU0621 0.69 -0.1 687,666 + DVU0621 0.69 -0.0 687,666 + DVU0621 0.69 -0.5 687,666 + DVU0621 0.69 -0.2 687,666 + DVU0621 0.69 -1.1 687,674 - DVU0621 0.70 +0.5 687,674 - DVU0621 0.70 -0.2 687,755 - DVU0621 0.76 -0.9 687,802 + DVU0621 0.79 -0.6 687,802 + DVU0621 0.79 -0.6 687,802 + DVU0621 0.79 +0.7 687,802 + DVU0621 0.79 -1.6 687,804 + DVU0621 0.79 +0.2 687,847 + DVU0621 0.82 -0.4 687,855 - DVU0621 0.83 -0.4 687,931 + DVU0621 0.88 +0.1 687,939 - DVU0621 0.89 +0.1 687,962 - -0.0 688,011 + +0.0 688,148 - +0.3 688,210 - -0.0 688,212 + -1.1 688,220 - +0.0 688,250 + -0.7 688,281 - +0.0 688,295 + -0.4 688,410 + -0.4 688,410 + -0.1 688,464 + -0.2 688,517 + DVU0622 0.11 -0.0 688,528 - DVU0622 0.12 +0.0 688,528 - DVU0622 0.12 +0.1 688,603 + DVU0622 0.15 -0.0 688,622 + DVU0622 0.16 -0.9 688,622 + DVU0622 0.16 -0.0 688,622 + DVU0622 0.16 +0.6 688,623 - DVU0622 0.16 +0.2 688,630 - DVU0622 0.16 -1.6 688,657 - DVU0622 0.17 -1.0 688,670 + DVU0622 0.18 -0.3 688,698 + DVU0622 0.19 -0.5 688,784 + DVU0622 0.22 -0.5 688,888 + DVU0622 0.26 -0.3 688,974 + DVU0622 0.30 -0.2 689,016 + DVU0622 0.31 -1.1 689,016 + DVU0622 0.31 -0.1 689,016 + DVU0622 0.31 -0.1 689,016 + DVU0622 0.31 -1.1 689,016 + DVU0622 0.31 -0.4 689,024 - DVU0622 0.32 -1.9 689,024 - DVU0622 0.32 -1.8 689,052 - DVU0622 0.33 -1.7 689,093 + DVU0622 0.34 -0.2 689,101 - DVU0622 0.35 +0.1 689,101 - DVU0622 0.35 -0.1 689,113 - DVU0622 0.35 -0.4 689,125 + DVU0622 0.36 -0.6 689,151 + DVU0622 0.37 -0.0 689,202 + DVU0622 0.39 -0.1 689,202 + DVU0622 0.39 +0.1 689,220 - DVU0622 0.40 -1.5 689,235 + DVU0622 0.40 +0.8 689,235 - DVU0622 0.40 -0.1 689,238 + DVU0622 0.40 -0.8 689,243 - DVU0622 0.40 +0.0 689,409 - DVU0622 0.47 -0.2 689,409 - DVU0622 0.47 -0.3 689,438 + DVU0622 0.48 +0.2 689,438 + DVU0622 0.48 +0.4 689,443 + DVU0622 0.48 -0.0 689,456 - DVU0622 0.49 -0.5 689,456 - DVU0622 0.49 -0.4 689,491 + DVU0622 0.50 -0.2 689,503 + DVU0622 0.51 -1.0 689,506 - DVU0622 0.51 -0.9 689,527 + DVU0622 0.52 -0.4 689,532 + DVU0622 0.52 +0.2 689,550 - DVU0622 0.53 +0.7 689,688 + DVU0622 0.58 +0.2 689,688 + DVU0622 0.58 +0.4 689,696 - DVU0622 0.59 -0.1 689,752 - DVU0622 0.61 -0.2 689,798 + DVU0622 0.63 -0.5 689,849 + DVU0622 0.65 -0.1 689,849 + DVU0622 0.65 +0.9 689,857 - DVU0622 0.65 +0.6 689,857 - DVU0622 0.65 +0.7 689,857 - DVU0622 0.65 +0.7 689,857 - DVU0622 0.65 -0.8 689,857 - DVU0622 0.65 -0.2 689,878 + DVU0622 0.66 -0.2 689,996 + DVU0622 0.71 -0.5 690,025 + DVU0622 0.72 +1.1 690,092 + DVU0622 0.74 -0.2 690,092 + DVU0622 0.74 -0.2 690,138 + DVU0622 0.76 -0.3 690,165 - DVU0622 0.77 -0.8 690,194 + DVU0622 0.79 +0.0 690,275 - DVU0622 0.82 -0.1 690,434 + DVU0622 0.88 -0.5 690,442 - DVU0622 0.88 +0.5 690,565 + -0.4 690,579 + -0.1 690,614 - +0.0 690,652 + -1.7 690,652 + +0.0 690,660 - -0.2 690,674 + +0.5 690,679 + +0.3 690,714 + -1.6 690,722 - +0.1 690,722 - -0.0 690,722 - -0.0 690,727 - -0.2 690,966 - -0.7 691,029 + -0.8 691,213 - nrfH DVU0624 0.29 -4.3 691,221 - nrfH DVU0624 0.31 -4.1 691,311 + nrfH DVU0624 0.50 -5.0 691,337 - nrfH DVU0624 0.55 -4.6 691,402 + nrfH DVU0624 0.69 -4.4 691,415 + nrfH DVU0624 0.71 +0.2 691,424 - nrfH DVU0624 0.73 -3.8 691,424 - nrfH DVU0624 0.73 -3.8 691,431 + nrfH DVU0624 0.75 -3.1 691,465 + nrfH DVU0624 0.82 -1.7 691,481 - nrfH DVU0624 0.85 -4.4 691,498 + nrfH DVU0624 0.89 -3.8 691,498 + nrfH DVU0624 0.89 -2.4 691,503 + nrfH DVU0624 0.90 -2.3 691,506 - -4.3 691,569 - -1.2
Or see this region's nucleotide sequence