Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.883.1 and Xcc-8004.884.1 overlap by 4 nucleotides Xcc-8004.884.1 and Xcc-8004.885.1 are separated by 3 nucleotides Xcc-8004.885.1 and Xcc-8004.887.1 overlap by 4 nucleotides
Xcc-8004.883.1: Xcc-8004.883.1 - Rod shape-determining protein MreC, at 831,400 to 832,749
Xcc-8004.883.1
Xcc-8004.884.1: Xcc-8004.884.1 - Rod shape-determining protein MreD, at 832,746 to 833,231
Xcc-8004.884.1
Xcc-8004.885.1: Xcc-8004.885.1 - Penicillin-binding protein 2 (PBP-2), at 833,235 to 835,295
Xcc-8004.885.1
Xcc-8004.887.1: Xcc-8004.887.1 - Rod shape-determining protein RodA, at 835,292 to 836,410
Xcc-8004.887.1
Position (kb) 833
834
835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 832.689 kb on + strand at 833.139 kb on + strand, within Xcc-8004.884.1 at 833.139 kb on + strand, within Xcc-8004.884.1 at 833.139 kb on + strand, within Xcc-8004.884.1 at 833.139 kb on + strand, within Xcc-8004.884.1 at 833.139 kb on + strand, within Xcc-8004.884.1 at 833.139 kb on + strand, within Xcc-8004.884.1 at 833.139 kb on + strand, within Xcc-8004.884.1 at 833.139 kb on + strand, within Xcc-8004.884.1 at 833.229 kb on + strand at 833.229 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 832,689 + +0.4 833,139 + Xcc-8004.884.1 0.81 +1.1 833,139 + Xcc-8004.884.1 0.81 -2.0 833,139 + Xcc-8004.884.1 0.81 -3.3 833,139 + Xcc-8004.884.1 0.81 -3.1 833,139 + Xcc-8004.884.1 0.81 -2.9 833,139 + Xcc-8004.884.1 0.81 -1.5 833,139 + Xcc-8004.884.1 0.81 -1.5 833,139 + Xcc-8004.884.1 0.81 -3.6 833,229 + +0.4 833,229 + +0.8
Or see this region's nucleotide sequence