Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.805.1 and Xcc-8004.806.1 are separated by 45 nucleotides Xcc-8004.806.1 and Xcc-8004.807.1 are separated by 134 nucleotides Xcc-8004.807.1 and Xcc-8004.808.1 are separated by 259 nucleotides
Xcc-8004.805.1: Xcc-8004.805.1 - Zinc transport protein ZntB, at 748,256 to 749,185
Xcc-8004.805.1
Xcc-8004.806.1: Xcc-8004.806.1 - putative; ORF located using Glimmer/Genemark, at 749,231 to 749,581
Xcc-8004.806.1
Xcc-8004.807.1: Xcc-8004.807.1 - FIG01212592: hypothetical protein, at 749,716 to 750,486
Xcc-8004.807.1
Xcc-8004.808.1: Xcc-8004.808.1 - Trehalase (EC 3.2.1.28); Periplasmic trehalase precursor (EC 3.2.1.28), at 750,746 to 752,419
Xcc-8004.808.1
Position (kb) 749
750
751 Strain fitness (log2 ratio) -2
-1
0
1
2 at 748.829 kb on + strand, within Xcc-8004.805.1 at 748.830 kb on - strand, within Xcc-8004.805.1 at 748.830 kb on - strand, within Xcc-8004.805.1 at 748.887 kb on + strand, within Xcc-8004.805.1 at 749.108 kb on + strand at 749.111 kb on + strand at 749.112 kb on - strand at 749.112 kb on - strand at 749.232 kb on + strand at 749.232 kb on + strand at 749.232 kb on + strand at 749.487 kb on - strand, within Xcc-8004.806.1 at 749.619 kb on + strand at 749.619 kb on + strand at 749.629 kb on + strand at 749.629 kb on + strand at 749.629 kb on + strand at 749.629 kb on + strand at 749.632 kb on + strand at 749.632 kb on + strand at 749.632 kb on + strand at 749.632 kb on + strand at 749.632 kb on + strand at 749.632 kb on + strand at 749.698 kb on + strand at 749.698 kb on + strand at 749.698 kb on + strand at 749.698 kb on + strand at 749.699 kb on - strand at 749.699 kb on - strand at 749.699 kb on - strand at 749.942 kb on + strand, within Xcc-8004.807.1 at 749.943 kb on - strand, within Xcc-8004.807.1 at 749.943 kb on - strand, within Xcc-8004.807.1 at 749.943 kb on - strand, within Xcc-8004.807.1 at 750.143 kb on + strand, within Xcc-8004.807.1 at 750.144 kb on - strand, within Xcc-8004.807.1 at 750.404 kb on - strand, within Xcc-8004.807.1 at 750.671 kb on + strand at 750.671 kb on + strand at 750.814 kb on - strand at 750.873 kb on + strand at 750.873 kb on + strand at 750.873 kb on + strand at 750.874 kb on - strand at 750.948 kb on - strand, within Xcc-8004.808.1 at 751.188 kb on + strand, within Xcc-8004.808.1 at 751.240 kb on - strand, within Xcc-8004.808.1 at 751.240 kb on - strand, within Xcc-8004.808.1 at 751.248 kb on + strand, within Xcc-8004.808.1 at 751.248 kb on + strand, within Xcc-8004.808.1 at 751.252 kb on - strand, within Xcc-8004.808.1 at 751.314 kb on + strand, within Xcc-8004.808.1 at 751.314 kb on + strand, within Xcc-8004.808.1 at 751.314 kb on + strand, within Xcc-8004.808.1 at 751.315 kb on - strand, within Xcc-8004.808.1 at 751.377 kb on + strand, within Xcc-8004.808.1 at 751.377 kb on + strand, within Xcc-8004.808.1 at 751.377 kb on + strand, within Xcc-8004.808.1 at 751.378 kb on - strand, within Xcc-8004.808.1 at 751.378 kb on - strand, within Xcc-8004.808.1 at 751.464 kb on + strand, within Xcc-8004.808.1 at 751.465 kb on - strand, within Xcc-8004.808.1 at 751.465 kb on - strand, within Xcc-8004.808.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 748,829 + Xcc-8004.805.1 0.62 +0.1 748,830 - Xcc-8004.805.1 0.62 -1.2 748,830 - Xcc-8004.805.1 0.62 -0.3 748,887 + Xcc-8004.805.1 0.68 -0.1 749,108 + +0.1 749,111 + +0.9 749,112 - +0.9 749,112 - +0.8 749,232 + -0.9 749,232 + +0.8 749,232 + +0.6 749,487 - Xcc-8004.806.1 0.73 -0.5 749,619 + +2.1 749,619 + -0.2 749,629 + -0.5 749,629 + -0.1 749,629 + -0.7 749,629 + -0.9 749,632 + -0.8 749,632 + -0.2 749,632 + +0.6 749,632 + +1.1 749,632 + +0.6 749,632 + +0.3 749,698 + -0.5 749,698 + +0.5 749,698 + -0.2 749,698 + +1.2 749,699 - +0.5 749,699 - +0.7 749,699 - +0.2 749,942 + Xcc-8004.807.1 0.29 -0.8 749,943 - Xcc-8004.807.1 0.29 +0.7 749,943 - Xcc-8004.807.1 0.29 -1.0 749,943 - Xcc-8004.807.1 0.29 -0.5 750,143 + Xcc-8004.807.1 0.55 -1.7 750,144 - Xcc-8004.807.1 0.56 -0.4 750,404 - Xcc-8004.807.1 0.89 -2.6 750,671 + +0.8 750,671 + -0.7 750,814 - -0.3 750,873 + -0.2 750,873 + -0.9 750,873 + +0.1 750,874 - -1.0 750,948 - Xcc-8004.808.1 0.12 -0.4 751,188 + Xcc-8004.808.1 0.26 -0.5 751,240 - Xcc-8004.808.1 0.30 -0.6 751,240 - Xcc-8004.808.1 0.30 +0.3 751,248 + Xcc-8004.808.1 0.30 +0.4 751,248 + Xcc-8004.808.1 0.30 +0.6 751,252 - Xcc-8004.808.1 0.30 +0.8 751,314 + Xcc-8004.808.1 0.34 +0.5 751,314 + Xcc-8004.808.1 0.34 -0.4 751,314 + Xcc-8004.808.1 0.34 +0.6 751,315 - Xcc-8004.808.1 0.34 +1.2 751,377 + Xcc-8004.808.1 0.38 -1.4 751,377 + Xcc-8004.808.1 0.38 -1.3 751,377 + Xcc-8004.808.1 0.38 -0.2 751,378 - Xcc-8004.808.1 0.38 -1.8 751,378 - Xcc-8004.808.1 0.38 +0.4 751,464 + Xcc-8004.808.1 0.43 -1.5 751,465 - Xcc-8004.808.1 0.43 -1.0 751,465 - Xcc-8004.808.1 0.43 +1.1
Or see this region's nucleotide sequence