Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4317.1 and Xcc-8004.4318.1 are separated by 336 nucleotides Xcc-8004.4318.1 and Xcc-8004.4320.1 are separated by 16 nucleotides Xcc-8004.4320.1 and Xcc-8004.4321.1 are separated by 99 nucleotides
Xcc-8004.4317.1: Xcc-8004.4317.1 - Adenosylhomocysteinase (EC 3.3.1.1), at 4,140,352 to 4,141,845
Xcc-8004.4317.1
Xcc-8004.4318.1: Xcc-8004.4318.1 - hypothetical protein, at 4,142,182 to 4,142,433
Xcc-8004.4318.1
Xcc-8004.4320.1: Xcc-8004.4320.1 - putative; ORF located using Glimmer/Genemark, at 4,142,450 to 4,142,758
Xcc-8004.4320.1
Xcc-8004.4321.1: Xcc-8004.4321.1 - FIG01211153: hypothetical protein, at 4,142,858 to 4,143,475
Xcc-8004.4321.1
Position (kb) 4142
4143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4141.529 kb on - strand, within Xcc-8004.4317.1 at 4141.843 kb on + strand at 4141.843 kb on + strand at 4141.843 kb on + strand at 4141.844 kb on - strand at 4141.844 kb on - strand at 4141.869 kb on + strand at 4141.870 kb on - strand at 4142.094 kb on + strand at 4142.167 kb on + strand at 4142.167 kb on + strand at 4142.168 kb on - strand at 4142.187 kb on + strand at 4142.313 kb on + strand, within Xcc-8004.4318.1 at 4142.313 kb on + strand, within Xcc-8004.4318.1 at 4142.395 kb on + strand, within Xcc-8004.4318.1 at 4142.395 kb on + strand, within Xcc-8004.4318.1 at 4142.396 kb on - strand, within Xcc-8004.4318.1 at 4142.415 kb on - strand at 4142.746 kb on - strand at 4142.746 kb on - strand at 4142.840 kb on + strand at 4143.012 kb on + strand, within Xcc-8004.4321.1 at 4143.012 kb on + strand, within Xcc-8004.4321.1 at 4143.013 kb on - strand, within Xcc-8004.4321.1 at 4143.081 kb on + strand, within Xcc-8004.4321.1 at 4143.081 kb on + strand, within Xcc-8004.4321.1 at 4143.099 kb on + strand, within Xcc-8004.4321.1 at 4143.099 kb on + strand, within Xcc-8004.4321.1 at 4143.099 kb on + strand, within Xcc-8004.4321.1 at 4143.100 kb on - strand, within Xcc-8004.4321.1 at 4143.100 kb on - strand, within Xcc-8004.4321.1 at 4143.100 kb on - strand, within Xcc-8004.4321.1 at 4143.100 kb on - strand, within Xcc-8004.4321.1 at 4143.100 kb on - strand, within Xcc-8004.4321.1 at 4143.104 kb on - strand, within Xcc-8004.4321.1 at 4143.149 kb on + strand, within Xcc-8004.4321.1 at 4143.150 kb on - strand, within Xcc-8004.4321.1 at 4143.401 kb on - strand, within Xcc-8004.4321.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 4,141,529 - Xcc-8004.4317.1 0.79 +1.7 4,141,843 + +2.5 4,141,843 + +0.1 4,141,843 + +0.9 4,141,844 - +1.5 4,141,844 - +0.5 4,141,869 + +0.5 4,141,870 - -1.0 4,142,094 + -0.0 4,142,167 + -0.2 4,142,167 + +2.1 4,142,168 - -0.0 4,142,187 + +1.1 4,142,313 + Xcc-8004.4318.1 0.52 -0.5 4,142,313 + Xcc-8004.4318.1 0.52 +1.1 4,142,395 + Xcc-8004.4318.1 0.85 +0.2 4,142,395 + Xcc-8004.4318.1 0.85 +0.1 4,142,396 - Xcc-8004.4318.1 0.85 +0.5 4,142,415 - +0.0 4,142,746 - +0.0 4,142,746 - -0.2 4,142,840 + +1.0 4,143,012 + Xcc-8004.4321.1 0.25 -2.2 4,143,012 + Xcc-8004.4321.1 0.25 -1.8 4,143,013 - Xcc-8004.4321.1 0.25 -1.4 4,143,081 + Xcc-8004.4321.1 0.36 -0.5 4,143,081 + Xcc-8004.4321.1 0.36 -1.3 4,143,099 + Xcc-8004.4321.1 0.39 -1.0 4,143,099 + Xcc-8004.4321.1 0.39 -0.8 4,143,099 + Xcc-8004.4321.1 0.39 -0.1 4,143,100 - Xcc-8004.4321.1 0.39 -1.9 4,143,100 - Xcc-8004.4321.1 0.39 -0.9 4,143,100 - Xcc-8004.4321.1 0.39 -0.7 4,143,100 - Xcc-8004.4321.1 0.39 +1.1 4,143,100 - Xcc-8004.4321.1 0.39 -0.2 4,143,104 - Xcc-8004.4321.1 0.40 -0.2 4,143,149 + Xcc-8004.4321.1 0.47 +1.1 4,143,150 - Xcc-8004.4321.1 0.47 -0.2 4,143,401 - Xcc-8004.4321.1 0.88 -1.7
Or see this region's nucleotide sequence