Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3624.1 and Xcc-8004.3626.1 are separated by 528 nucleotides Xcc-8004.3626.1 and Xcc-8004.3628.1 are separated by 138 nucleotides Xcc-8004.3628.1 and Xcc-8004.3629.1 are separated by 118 nucleotides
Xcc-8004.3624.1: Xcc-8004.3624.1 - FIG01210604: hypothetical protein, at 3,510,734 to 3,511,783
Xcc-8004.3624.1
Xcc-8004.3626.1: Xcc-8004.3626.1 - putative; ORF located using Glimmer/Genemark, at 3,512,312 to 3,513,265
Xcc-8004.3626.1
Xcc-8004.3628.1: Xcc-8004.3628.1 - Alkylphosphonate utilization operon protein PhnA, at 3,513,404 to 3,513,739
Xcc-8004.3628.1
Xcc-8004.3629.1: Xcc-8004.3629.1 - Cation transport protein, at 3,513,858 to 3,514,820
Xcc-8004.3629.1
Position (kb) 3512
3513
3514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3511.340 kb on + strand, within Xcc-8004.3624.1 at 3511.340 kb on + strand, within Xcc-8004.3624.1 at 3511.340 kb on + strand, within Xcc-8004.3624.1 at 3511.340 kb on + strand, within Xcc-8004.3624.1 at 3511.340 kb on + strand, within Xcc-8004.3624.1 at 3511.340 kb on + strand, within Xcc-8004.3624.1 at 3511.341 kb on - strand, within Xcc-8004.3624.1 at 3511.341 kb on - strand, within Xcc-8004.3624.1 at 3511.341 kb on - strand, within Xcc-8004.3624.1 at 3511.341 kb on - strand, within Xcc-8004.3624.1 at 3511.341 kb on - strand, within Xcc-8004.3624.1 at 3511.418 kb on + strand, within Xcc-8004.3624.1 at 3511.419 kb on - strand, within Xcc-8004.3624.1 at 3511.419 kb on - strand, within Xcc-8004.3624.1 at 3511.816 kb on - strand at 3511.825 kb on + strand at 3511.826 kb on - strand at 3511.826 kb on - strand at 3511.826 kb on - strand at 3511.944 kb on - strand at 3511.960 kb on + strand at 3511.961 kb on - strand at 3512.026 kb on - strand at 3512.159 kb on + strand at 3512.159 kb on + strand at 3512.373 kb on + strand at 3512.377 kb on + strand at 3512.377 kb on + strand at 3512.377 kb on + strand at 3512.378 kb on - strand at 3512.378 kb on - strand at 3512.378 kb on - strand at 3512.516 kb on + strand, within Xcc-8004.3626.1 at 3512.517 kb on - strand, within Xcc-8004.3626.1 at 3512.517 kb on - strand, within Xcc-8004.3626.1 at 3512.517 kb on - strand, within Xcc-8004.3626.1 at 3512.604 kb on + strand, within Xcc-8004.3626.1 at 3512.604 kb on + strand, within Xcc-8004.3626.1 at 3512.604 kb on + strand, within Xcc-8004.3626.1 at 3512.604 kb on + strand, within Xcc-8004.3626.1 at 3512.605 kb on - strand, within Xcc-8004.3626.1 at 3512.819 kb on + strand, within Xcc-8004.3626.1 at 3512.819 kb on + strand, within Xcc-8004.3626.1 at 3512.819 kb on + strand, within Xcc-8004.3626.1 at 3512.820 kb on - strand, within Xcc-8004.3626.1 at 3512.820 kb on - strand, within Xcc-8004.3626.1 at 3512.820 kb on - strand, within Xcc-8004.3626.1 at 3512.921 kb on + strand, within Xcc-8004.3626.1 at 3512.921 kb on + strand, within Xcc-8004.3626.1 at 3512.921 kb on + strand, within Xcc-8004.3626.1 at 3512.921 kb on + strand, within Xcc-8004.3626.1 at 3512.922 kb on - strand, within Xcc-8004.3626.1 at 3513.014 kb on + strand, within Xcc-8004.3626.1 at 3513.015 kb on - strand, within Xcc-8004.3626.1 at 3513.015 kb on - strand, within Xcc-8004.3626.1 at 3513.017 kb on + strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.018 kb on - strand, within Xcc-8004.3626.1 at 3513.252 kb on - strand at 3513.252 kb on - strand at 3513.252 kb on - strand at 3513.290 kb on - strand at 3513.290 kb on - strand at 3513.290 kb on - strand at 3513.290 kb on - strand at 3513.290 kb on - strand at 3513.363 kb on + strand at 3513.363 kb on + strand at 3513.363 kb on + strand at 3513.363 kb on + strand at 3513.363 kb on + strand at 3513.393 kb on + strand at 3513.393 kb on + strand at 3513.393 kb on + strand at 3513.499 kb on + strand, within Xcc-8004.3628.1 at 3513.500 kb on - strand, within Xcc-8004.3628.1 at 3513.693 kb on + strand, within Xcc-8004.3628.1 at 3513.693 kb on + strand, within Xcc-8004.3628.1 at 3513.693 kb on + strand, within Xcc-8004.3628.1 at 3513.693 kb on + strand, within Xcc-8004.3628.1 at 3513.693 kb on + strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.694 kb on - strand, within Xcc-8004.3628.1 at 3513.750 kb on - strand at 3513.750 kb on - strand at 3513.866 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.894 kb on + strand at 3513.895 kb on - strand at 3513.895 kb on - strand at 3513.895 kb on - strand at 3514.026 kb on + strand, within Xcc-8004.3629.1 at 3514.027 kb on - strand, within Xcc-8004.3629.1 at 3514.093 kb on - strand, within Xcc-8004.3629.1 at 3514.093 kb on - strand, within Xcc-8004.3629.1 at 3514.093 kb on - strand, within Xcc-8004.3629.1 at 3514.093 kb on - strand, within Xcc-8004.3629.1 at 3514.209 kb on + strand, within Xcc-8004.3629.1 at 3514.210 kb on - strand, within Xcc-8004.3629.1 at 3514.210 kb on - strand, within Xcc-8004.3629.1 at 3514.211 kb on + strand, within Xcc-8004.3629.1 at 3514.211 kb on + strand, within Xcc-8004.3629.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x remove 3,511,340 + Xcc-8004.3624.1 0.58 +1.2 3,511,340 + Xcc-8004.3624.1 0.58 +0.7 3,511,340 + Xcc-8004.3624.1 0.58 -0.3 3,511,340 + Xcc-8004.3624.1 0.58 -0.3 3,511,340 + Xcc-8004.3624.1 0.58 +0.3 3,511,340 + Xcc-8004.3624.1 0.58 -0.3 3,511,341 - Xcc-8004.3624.1 0.58 +0.9 3,511,341 - Xcc-8004.3624.1 0.58 -0.1 3,511,341 - Xcc-8004.3624.1 0.58 +0.2 3,511,341 - Xcc-8004.3624.1 0.58 -2.6 3,511,341 - Xcc-8004.3624.1 0.58 -0.0 3,511,418 + Xcc-8004.3624.1 0.65 -0.5 3,511,419 - Xcc-8004.3624.1 0.65 +1.9 3,511,419 - Xcc-8004.3624.1 0.65 +0.6 3,511,816 - -0.2 3,511,825 + -0.7 3,511,826 - +0.0 3,511,826 - +0.0 3,511,826 - +0.2 3,511,944 - -0.4 3,511,960 + -1.6 3,511,961 - +0.3 3,512,026 - -0.2 3,512,159 + +1.0 3,512,159 + +0.3 3,512,373 + -1.1 3,512,377 + -0.4 3,512,377 + +1.2 3,512,377 + +0.6 3,512,378 - -0.0 3,512,378 - +0.3 3,512,378 - -0.4 3,512,516 + Xcc-8004.3626.1 0.21 +0.4 3,512,517 - Xcc-8004.3626.1 0.21 -0.8 3,512,517 - Xcc-8004.3626.1 0.21 -0.2 3,512,517 - Xcc-8004.3626.1 0.21 -1.2 3,512,604 + Xcc-8004.3626.1 0.31 +0.2 3,512,604 + Xcc-8004.3626.1 0.31 +0.0 3,512,604 + Xcc-8004.3626.1 0.31 +0.7 3,512,604 + Xcc-8004.3626.1 0.31 +1.1 3,512,605 - Xcc-8004.3626.1 0.31 -0.2 3,512,819 + Xcc-8004.3626.1 0.53 +0.2 3,512,819 + Xcc-8004.3626.1 0.53 +0.3 3,512,819 + Xcc-8004.3626.1 0.53 +0.4 3,512,820 - Xcc-8004.3626.1 0.53 -1.3 3,512,820 - Xcc-8004.3626.1 0.53 +0.0 3,512,820 - Xcc-8004.3626.1 0.53 -0.6 3,512,921 + Xcc-8004.3626.1 0.64 -1.6 3,512,921 + Xcc-8004.3626.1 0.64 +1.4 3,512,921 + Xcc-8004.3626.1 0.64 +1.4 3,512,921 + Xcc-8004.3626.1 0.64 +0.5 3,512,922 - Xcc-8004.3626.1 0.64 +0.8 3,513,014 + Xcc-8004.3626.1 0.74 +0.7 3,513,015 - Xcc-8004.3626.1 0.74 +3.0 3,513,015 - Xcc-8004.3626.1 0.74 +0.5 3,513,017 + Xcc-8004.3626.1 0.74 +1.2 3,513,018 - Xcc-8004.3626.1 0.74 +0.5 3,513,018 - Xcc-8004.3626.1 0.74 -0.3 3,513,018 - Xcc-8004.3626.1 0.74 -0.2 3,513,018 - Xcc-8004.3626.1 0.74 -0.1 3,513,018 - Xcc-8004.3626.1 0.74 +1.6 3,513,018 - Xcc-8004.3626.1 0.74 +0.2 3,513,252 - +0.9 3,513,252 - +0.1 3,513,252 - +0.8 3,513,290 - -0.1 3,513,290 - -0.2 3,513,290 - -0.0 3,513,290 - -0.5 3,513,290 - -1.2 3,513,363 + +0.0 3,513,363 + +1.6 3,513,363 + +1.7 3,513,363 + +0.0 3,513,363 + +0.7 3,513,393 + -0.3 3,513,393 + -0.7 3,513,393 + +0.1 3,513,499 + Xcc-8004.3628.1 0.28 -0.8 3,513,500 - Xcc-8004.3628.1 0.29 -0.2 3,513,693 + Xcc-8004.3628.1 0.86 -0.6 3,513,693 + Xcc-8004.3628.1 0.86 +0.9 3,513,693 + Xcc-8004.3628.1 0.86 -0.4 3,513,693 + Xcc-8004.3628.1 0.86 +0.8 3,513,693 + Xcc-8004.3628.1 0.86 -0.4 3,513,694 - Xcc-8004.3628.1 0.86 -0.8 3,513,694 - Xcc-8004.3628.1 0.86 -0.2 3,513,694 - Xcc-8004.3628.1 0.86 +0.7 3,513,694 - Xcc-8004.3628.1 0.86 +0.4 3,513,694 - Xcc-8004.3628.1 0.86 +1.4 3,513,694 - Xcc-8004.3628.1 0.86 -0.0 3,513,750 - +0.0 3,513,750 - -0.6 3,513,866 + +0.3 3,513,894 + -1.2 3,513,894 + -0.4 3,513,894 + -3.2 3,513,894 + +0.8 3,513,894 + +0.5 3,513,894 + -0.5 3,513,894 + -1.4 3,513,895 - -0.4 3,513,895 - -0.3 3,513,895 - +0.1 3,514,026 + Xcc-8004.3629.1 0.17 +0.2 3,514,027 - Xcc-8004.3629.1 0.18 -0.8 3,514,093 - Xcc-8004.3629.1 0.24 +0.3 3,514,093 - Xcc-8004.3629.1 0.24 +0.2 3,514,093 - Xcc-8004.3629.1 0.24 -0.3 3,514,093 - Xcc-8004.3629.1 0.24 -0.4 3,514,209 + Xcc-8004.3629.1 0.36 +2.3 3,514,210 - Xcc-8004.3629.1 0.37 +0.2 3,514,210 - Xcc-8004.3629.1 0.37 +0.3 3,514,211 + Xcc-8004.3629.1 0.37 +0.0 3,514,211 + Xcc-8004.3629.1 0.37 +0.9
Or see this region's nucleotide sequence