Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt proA and tRNA-Gly are separated by 157 nucleotides tRNA-Gly and ribH are separated by 61 nucleotides ribH and psbZ are separated by 9 nucleotides psbZ and Synpcc7942_2246 are separated by 206 nucleotides
Synpcc7942_2243: proA - Glutamate-5-semialdehyde dehydrogenase, at 2,308,253 to 2,309,497
proA
Synpcc7942_R0009: tRNA-Gly - tRNA-Gly, at 2,309,655 to 2,309,726
tRNA-Gly
Synpcc7942_2244: ribH - riboflavin synthase subunit beta, at 2,309,788 to 2,310,333
ribH
Synpcc7942_2245: psbZ - photosystem II reaction center protein PsbZ, at 2,310,343 to 2,310,531
psbZ
Synpcc7942_2246: Synpcc7942_2246 - hypothetical protein, at 2,310,738 to 2,312,300
_2246
Position (kb)
2309
2310
2311 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 2308.797 kb on + strand, within proA at 2308.797 kb on + strand, within proA at 2308.814 kb on - strand, within proA at 2308.829 kb on - strand, within proA at 2308.834 kb on + strand, within proA at 2308.845 kb on + strand, within proA at 2308.853 kb on - strand, within proA at 2308.920 kb on - strand, within proA at 2308.937 kb on + strand, within proA at 2308.955 kb on - strand, within proA at 2308.956 kb on - strand, within proA at 2308.967 kb on + strand, within proA at 2309.005 kb on + strand, within proA at 2309.047 kb on + strand, within proA at 2309.066 kb on - strand, within proA at 2309.125 kb on - strand, within proA at 2309.143 kb on - strand, within proA at 2309.157 kb on + strand, within proA at 2309.157 kb on + strand, within proA at 2309.157 kb on - strand, within proA at 2309.163 kb on + strand, within proA at 2309.165 kb on - strand, within proA at 2309.177 kb on - strand, within proA at 2309.236 kb on + strand, within proA at 2309.287 kb on + strand, within proA at 2309.287 kb on + strand, within proA at 2309.295 kb on - strand, within proA at 2309.295 kb on - strand, within proA at 2309.320 kb on + strand, within proA at 2309.337 kb on + strand, within proA at 2309.387 kb on + strand at 2309.395 kb on - strand at 2309.399 kb on + strand at 2309.407 kb on + strand at 2309.427 kb on + strand at 2309.428 kb on + strand at 2309.434 kb on - strand at 2309.436 kb on - strand at 2309.457 kb on + strand at 2309.557 kb on + strand at 2309.565 kb on - strand at 2309.569 kb on + strand at 2309.574 kb on + strand at 2309.577 kb on - strand at 2309.577 kb on - strand at 2309.584 kb on - strand at 2310.389 kb on + strand, within psbZ at 2310.497 kb on + strand, within psbZ at 2310.545 kb on + strand at 2310.665 kb on - strand at 2310.680 kb on + strand at 2310.685 kb on + strand at 2310.692 kb on - strand at 2310.773 kb on - strand at 2310.822 kb on + strand at 2310.845 kb on + strand at 2310.845 kb on + strand at 2310.845 kb on + strand at 2310.845 kb on + strand at 2310.845 kb on + strand at 2310.853 kb on - strand at 2310.853 kb on - strand at 2310.853 kb on - strand at 2310.853 kb on - strand at 2310.867 kb on - strand at 2310.869 kb on + strand at 2310.911 kb on + strand, within Synpcc7942_2246 at 2310.924 kb on - strand, within Synpcc7942_2246 at 2310.935 kb on + strand, within Synpcc7942_2246 at 2310.942 kb on + strand, within Synpcc7942_2246 at 2310.942 kb on + strand, within Synpcc7942_2246 at 2310.942 kb on + strand, within Synpcc7942_2246 at 2310.950 kb on - strand, within Synpcc7942_2246 at 2310.972 kb on + strand, within Synpcc7942_2246 at 2310.984 kb on + strand, within Synpcc7942_2246 at 2310.984 kb on + strand, within Synpcc7942_2246 at 2311.030 kb on + strand, within Synpcc7942_2246 at 2311.030 kb on + strand, within Synpcc7942_2246 at 2311.038 kb on - strand, within Synpcc7942_2246 at 2311.092 kb on - strand, within Synpcc7942_2246 at 2311.144 kb on + strand, within Synpcc7942_2246 at 2311.144 kb on + strand, within Synpcc7942_2246 at 2311.200 kb on + strand, within Synpcc7942_2246 at 2311.210 kb on + strand, within Synpcc7942_2246 at 2311.210 kb on + strand, within Synpcc7942_2246 at 2311.213 kb on - strand, within Synpcc7942_2246 at 2311.330 kb on + strand, within Synpcc7942_2246 at 2311.330 kb on + strand, within Synpcc7942_2246
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 2,308,797 + proA Synpcc7942_2243 0.44 +2.8 2,308,797 + proA Synpcc7942_2243 0.44 -0.5 2,308,814 - proA Synpcc7942_2243 0.45 +2.3 2,308,829 - proA Synpcc7942_2243 0.46 +0.7 2,308,834 + proA Synpcc7942_2243 0.47 +0.1 2,308,845 + proA Synpcc7942_2243 0.48 +2.6 2,308,853 - proA Synpcc7942_2243 0.48 +0.6 2,308,920 - proA Synpcc7942_2243 0.54 +2.5 2,308,937 + proA Synpcc7942_2243 0.55 +2.1 2,308,955 - proA Synpcc7942_2243 0.56 +0.9 2,308,956 - proA Synpcc7942_2243 0.56 +1.7 2,308,967 + proA Synpcc7942_2243 0.57 -1.1 2,309,005 + proA Synpcc7942_2243 0.60 -1.7 2,309,047 + proA Synpcc7942_2243 0.64 +0.5 2,309,066 - proA Synpcc7942_2243 0.65 +2.4 2,309,125 - proA Synpcc7942_2243 0.70 -0.1 2,309,143 - proA Synpcc7942_2243 0.71 -3.1 2,309,157 + proA Synpcc7942_2243 0.73 +3.6 2,309,157 + proA Synpcc7942_2243 0.73 +0.6 2,309,157 - proA Synpcc7942_2243 0.73 +3.3 2,309,163 + proA Synpcc7942_2243 0.73 +2.7 2,309,165 - proA Synpcc7942_2243 0.73 -1.4 2,309,177 - proA Synpcc7942_2243 0.74 +2.5 2,309,236 + proA Synpcc7942_2243 0.79 -1.0 2,309,287 + proA Synpcc7942_2243 0.83 +2.4 2,309,287 + proA Synpcc7942_2243 0.83 -1.3 2,309,295 - proA Synpcc7942_2243 0.84 +2.3 2,309,295 - proA Synpcc7942_2243 0.84 +2.1 2,309,320 + proA Synpcc7942_2243 0.86 -1.9 2,309,337 + proA Synpcc7942_2243 0.87 -1.3 2,309,387 + +1.8 2,309,395 - +0.6 2,309,399 + +2.3 2,309,407 + +2.6 2,309,427 + +1.3 2,309,428 + -5.7 2,309,434 - +4.7 2,309,436 - +2.1 2,309,457 + +1.7 2,309,557 + +1.8 2,309,565 - +2.9 2,309,569 + -0.5 2,309,574 + -1.7 2,309,577 - +0.5 2,309,577 - +1.4 2,309,584 - +2.3 2,310,389 + psbZ Synpcc7942_2245 0.24 -0.7 2,310,497 + psbZ Synpcc7942_2245 0.81 +0.4 2,310,545 + -0.1 2,310,665 - -4.1 2,310,680 + -0.3 2,310,685 + -1.7 2,310,692 - -0.7 2,310,773 - -0.1 2,310,822 + +0.1 2,310,845 + +2.9 2,310,845 + -1.0 2,310,845 + +1.7 2,310,845 + -0.7 2,310,845 + -3.1 2,310,853 - -2.0 2,310,853 - +0.3 2,310,853 - +0.3 2,310,853 - +1.4 2,310,867 - -1.3 2,310,869 + -2.7 2,310,911 + Synpcc7942_2246 0.11 -1.1 2,310,924 - Synpcc7942_2246 0.12 +0.3 2,310,935 + Synpcc7942_2246 0.13 -0.1 2,310,942 + Synpcc7942_2246 0.13 +1.6 2,310,942 + Synpcc7942_2246 0.13 -1.3 2,310,942 + Synpcc7942_2246 0.13 +0.1 2,310,950 - Synpcc7942_2246 0.14 +2.0 2,310,972 + Synpcc7942_2246 0.15 -0.7 2,310,984 + Synpcc7942_2246 0.16 -0.5 2,310,984 + Synpcc7942_2246 0.16 -2.0 2,311,030 + Synpcc7942_2246 0.19 -1.3 2,311,030 + Synpcc7942_2246 0.19 -1.3 2,311,038 - Synpcc7942_2246 0.19 -2.9 2,311,092 - Synpcc7942_2246 0.23 -1.3 2,311,144 + Synpcc7942_2246 0.26 -2.0 2,311,144 + Synpcc7942_2246 0.26 -5.2 2,311,200 + Synpcc7942_2246 0.30 -2.9 2,311,210 + Synpcc7942_2246 0.30 -1.3 2,311,210 + Synpcc7942_2246 0.30 -3.3 2,311,213 - Synpcc7942_2246 0.30 -1.3 2,311,330 + Synpcc7942_2246 0.38 +1.1 2,311,330 + Synpcc7942_2246 0.38 -2.3
Or see this region's nucleotide sequence