Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0880 and pheA are separated by 79 nucleotides pheA and lon are separated by 12 nucleotides lon and rpsJ are separated by 209 nucleotides rpsJ and EF-Tu are separated by 73 nucleotides
Synpcc7942_0880: Synpcc7942_0880 - hypothetical protein, at 886,915 to 887,472
_0880
Synpcc7942_0881: pheA - prephenate dehydratase, at 887,552 to 888,427
pheA
Synpcc7942_0882: lon - Peptidase S16, lon-like, at 888,440 to 889,096
lon
Synpcc7942_0883: rpsJ - 30S ribosomal protein S10, at 889,306 to 889,623
rpsJ
Synpcc7942_0884: EF-Tu - elongation factor Tu, at 889,697 to 890,926
EF-Tu
Position (kb) 888
889
890 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 887.540 kb on - strand at 887.542 kb on + strand at 887.556 kb on - strand at 887.556 kb on - strand at 888.387 kb on + strand at 888.387 kb on + strand at 888.395 kb on - strand at 888.395 kb on - strand at 888.395 kb on - strand at 888.445 kb on - strand at 888.591 kb on + strand, within lon at 888.591 kb on + strand, within lon at 888.612 kb on + strand, within lon at 888.614 kb on + strand, within lon at 888.625 kb on + strand, within lon at 888.626 kb on - strand, within lon at 888.681 kb on + strand, within lon at 888.701 kb on + strand, within lon at 888.711 kb on + strand, within lon at 888.714 kb on - strand, within lon at 888.719 kb on - strand, within lon at 888.721 kb on - strand, within lon at 888.731 kb on + strand, within lon at 888.760 kb on + strand, within lon at 888.772 kb on + strand, within lon at 888.780 kb on - strand, within lon at 888.835 kb on - strand, within lon at 888.889 kb on - strand, within lon at 888.902 kb on - strand, within lon at 888.912 kb on + strand, within lon at 888.982 kb on + strand at 889.031 kb on + strand at 889.112 kb on + strand at 889.112 kb on + strand at 889.112 kb on + strand at 889.112 kb on + strand at 889.112 kb on + strand at 889.120 kb on - strand at 889.120 kb on - strand at 889.134 kb on + strand at 889.144 kb on + strand at 889.152 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 887,540 - +4.0 887,542 + -2.3 887,556 - -0.3 887,556 - -1.7 888,387 + +0.3 888,387 + -0.1 888,395 - +1.6 888,395 - -0.7 888,395 - +0.3 888,445 - +0.6 888,591 + lon Synpcc7942_0882 0.23 -2.1 888,591 + lon Synpcc7942_0882 0.23 -2.7 888,612 + lon Synpcc7942_0882 0.26 -2.4 888,614 + lon Synpcc7942_0882 0.26 -0.3 888,625 + lon Synpcc7942_0882 0.28 -2.5 888,626 - lon Synpcc7942_0882 0.28 -1.0 888,681 + lon Synpcc7942_0882 0.37 +0.1 888,701 + lon Synpcc7942_0882 0.40 -2.3 888,711 + lon Synpcc7942_0882 0.41 +0.3 888,714 - lon Synpcc7942_0882 0.42 -2.3 888,719 - lon Synpcc7942_0882 0.42 -1.5 888,721 - lon Synpcc7942_0882 0.43 -4.3 888,731 + lon Synpcc7942_0882 0.44 -0.7 888,760 + lon Synpcc7942_0882 0.49 -2.1 888,772 + lon Synpcc7942_0882 0.51 -0.7 888,780 - lon Synpcc7942_0882 0.52 -0.7 888,835 - lon Synpcc7942_0882 0.60 -2.7 888,889 - lon Synpcc7942_0882 0.68 -0.1 888,902 - lon Synpcc7942_0882 0.70 -0.3 888,912 + lon Synpcc7942_0882 0.72 -0.4 888,982 + -0.7 889,031 + -1.3 889,112 + -0.7 889,112 + -2.1 889,112 + +0.8 889,112 + +1.6 889,112 + -5.8 889,120 - +0.3 889,120 - +0.3 889,134 + -0.3 889,144 + +0.3 889,152 - +0.6
Or see this region's nucleotide sequence