Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0823 and Synpcc7942_0824 overlap by 26 nucleotides Synpcc7942_0824 and Synpcc7942_0825 are separated by 60 nucleotides Synpcc7942_0825 and Synpcc7942_0826 are separated by 38 nucleotides
Synpcc7942_0823: Synpcc7942_0823 - hypothetical protein, at 817,168 to 818,214
_0823
Synpcc7942_0824: Synpcc7942_0824 - hypothetical protein, at 818,189 to 819,895
_0824
Synpcc7942_0825: Synpcc7942_0825 - hypothetical protein, at 819,956 to 820,654
_0825
Synpcc7942_0826: Synpcc7942_0826 - hypothetical protein, at 820,693 to 821,628
_0826
Position (kb) 818
819
820 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 817.230 kb on + strand at 817.240 kb on - strand at 817.240 kb on - strand at 817.256 kb on - strand at 817.310 kb on - strand, within Synpcc7942_0823 at 817.315 kb on - strand, within Synpcc7942_0823 at 817.320 kb on - strand, within Synpcc7942_0823 at 817.320 kb on - strand, within Synpcc7942_0823 at 817.328 kb on + strand, within Synpcc7942_0823 at 817.328 kb on + strand, within Synpcc7942_0823 at 817.330 kb on - strand, within Synpcc7942_0823 at 817.336 kb on - strand, within Synpcc7942_0823 at 817.336 kb on - strand, within Synpcc7942_0823 at 817.342 kb on + strand, within Synpcc7942_0823 at 817.359 kb on - strand, within Synpcc7942_0823 at 817.369 kb on - strand, within Synpcc7942_0823 at 817.414 kb on - strand, within Synpcc7942_0823 at 817.430 kb on - strand, within Synpcc7942_0823 at 817.432 kb on + strand, within Synpcc7942_0823 at 817.469 kb on - strand, within Synpcc7942_0823 at 817.473 kb on + strand at 817.476 kb on - strand, within Synpcc7942_0823 at 817.476 kb on - strand, within Synpcc7942_0823 at 817.481 kb on - strand, within Synpcc7942_0823 at 817.485 kb on + strand, within Synpcc7942_0823 at 817.501 kb on - strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.573 kb on + strand, within Synpcc7942_0823 at 817.575 kb on + strand, within Synpcc7942_0823 at 817.575 kb on + strand, within Synpcc7942_0823 at 817.575 kb on + strand, within Synpcc7942_0823 at 817.581 kb on - strand at 817.581 kb on - strand, within Synpcc7942_0823 at 817.581 kb on - strand, within Synpcc7942_0823 at 817.581 kb on - strand, within Synpcc7942_0823 at 817.581 kb on - strand, within Synpcc7942_0823 at 817.581 kb on - strand, within Synpcc7942_0823 at 817.581 kb on - strand, within Synpcc7942_0823 at 817.581 kb on - strand, within Synpcc7942_0823 at 817.581 kb on - strand, within Synpcc7942_0823 at 817.583 kb on - strand, within Synpcc7942_0823 at 817.585 kb on + strand, within Synpcc7942_0823 at 817.585 kb on + strand, within Synpcc7942_0823 at 817.585 kb on + strand, within Synpcc7942_0823 at 817.585 kb on + strand, within Synpcc7942_0823 at 817.585 kb on + strand, within Synpcc7942_0823 at 817.585 kb on + strand, within Synpcc7942_0823 at 817.593 kb on - strand, within Synpcc7942_0823 at 817.593 kb on - strand, within Synpcc7942_0823 at 817.593 kb on - strand, within Synpcc7942_0823 at 817.593 kb on - strand, within Synpcc7942_0823 at 817.593 kb on - strand, within Synpcc7942_0823 at 817.593 kb on - strand, within Synpcc7942_0823 at 817.593 kb on - strand, within Synpcc7942_0823 at 817.608 kb on + strand, within Synpcc7942_0823 at 817.616 kb on - strand, within Synpcc7942_0823 at 817.649 kb on - strand at 817.661 kb on - strand, within Synpcc7942_0823 at 817.664 kb on - strand, within Synpcc7942_0823 at 817.664 kb on - strand, within Synpcc7942_0823 at 817.675 kb on + strand, within Synpcc7942_0823 at 817.683 kb on - strand, within Synpcc7942_0823 at 817.697 kb on - strand, within Synpcc7942_0823 at 817.715 kb on + strand, within Synpcc7942_0823 at 817.723 kb on + strand, within Synpcc7942_0823 at 817.733 kb on + strand, within Synpcc7942_0823 at 817.735 kb on + strand, within Synpcc7942_0823 at 817.735 kb on + strand, within Synpcc7942_0823 at 817.735 kb on + strand, within Synpcc7942_0823 at 817.737 kb on + strand, within Synpcc7942_0823 at 817.743 kb on - strand, within Synpcc7942_0823 at 817.743 kb on - strand, within Synpcc7942_0823 at 817.789 kb on - strand, within Synpcc7942_0823 at 817.873 kb on + strand, within Synpcc7942_0823 at 817.904 kb on + strand, within Synpcc7942_0823 at 817.948 kb on + strand, within Synpcc7942_0823 at 818.032 kb on - strand, within Synpcc7942_0823 at 818.034 kb on - strand, within Synpcc7942_0823 at 818.051 kb on + strand, within Synpcc7942_0823 at 818.051 kb on + strand, within Synpcc7942_0823 at 818.059 kb on - strand, within Synpcc7942_0823 at 818.072 kb on + strand, within Synpcc7942_0823 at 818.087 kb on - strand, within Synpcc7942_0823 at 818.148 kb on - strand at 818.193 kb on + strand at 818.198 kb on - strand at 818.201 kb on - strand at 818.234 kb on + strand at 818.250 kb on + strand at 818.265 kb on + strand at 818.270 kb on + strand at 818.308 kb on + strand at 818.323 kb on - strand at 818.346 kb on + strand at 818.346 kb on + strand at 818.346 kb on + strand at 818.351 kb on + strand at 818.354 kb on - strand at 818.354 kb on - strand at 818.354 kb on - strand at 818.354 kb on - strand at 818.359 kb on - strand at 818.363 kb on + strand, within Synpcc7942_0824 at 818.378 kb on + strand, within Synpcc7942_0824 at 818.479 kb on + strand, within Synpcc7942_0824 at 818.479 kb on + strand, within Synpcc7942_0824 at 818.479 kb on + strand, within Synpcc7942_0824 at 818.487 kb on - strand, within Synpcc7942_0824 at 818.498 kb on + strand, within Synpcc7942_0824 at 818.506 kb on - strand, within Synpcc7942_0824 at 818.508 kb on - strand, within Synpcc7942_0824 at 818.508 kb on - strand, within Synpcc7942_0824 at 818.523 kb on + strand, within Synpcc7942_0824 at 818.537 kb on + strand, within Synpcc7942_0824 at 818.546 kb on - strand, within Synpcc7942_0824 at 818.589 kb on - strand, within Synpcc7942_0824 at 818.614 kb on + strand, within Synpcc7942_0824 at 818.628 kb on + strand, within Synpcc7942_0824 at 818.635 kb on + strand, within Synpcc7942_0824 at 818.645 kb on + strand, within Synpcc7942_0824 at 818.653 kb on - strand, within Synpcc7942_0824 at 818.653 kb on - strand, within Synpcc7942_0824 at 818.678 kb on - strand, within Synpcc7942_0824 at 818.678 kb on - strand, within Synpcc7942_0824 at 818.680 kb on + strand, within Synpcc7942_0824 at 818.680 kb on + strand, within Synpcc7942_0824 at 818.688 kb on - strand, within Synpcc7942_0824 at 818.688 kb on - strand, within Synpcc7942_0824 at 818.719 kb on + strand, within Synpcc7942_0824 at 818.793 kb on + strand, within Synpcc7942_0824 at 818.797 kb on - strand, within Synpcc7942_0824 at 818.803 kb on - strand, within Synpcc7942_0824 at 818.828 kb on + strand, within Synpcc7942_0824 at 818.863 kb on + strand, within Synpcc7942_0824 at 818.923 kb on + strand, within Synpcc7942_0824 at 818.938 kb on + strand, within Synpcc7942_0824 at 818.964 kb on - strand, within Synpcc7942_0824 at 818.969 kb on - strand, within Synpcc7942_0824 at 818.985 kb on + strand, within Synpcc7942_0824 at 818.985 kb on + strand, within Synpcc7942_0824 at 818.993 kb on - strand, within Synpcc7942_0824 at 818.993 kb on - strand, within Synpcc7942_0824 at 818.993 kb on - strand, within Synpcc7942_0824 at 818.993 kb on - strand, within Synpcc7942_0824 at 819.116 kb on - strand, within Synpcc7942_0824 at 819.116 kb on - strand, within Synpcc7942_0824 at 819.160 kb on - strand, within Synpcc7942_0824 at 819.175 kb on + strand, within Synpcc7942_0824 at 819.211 kb on + strand, within Synpcc7942_0824 at 819.216 kb on + strand, within Synpcc7942_0824 at 819.224 kb on + strand, within Synpcc7942_0824 at 819.231 kb on + strand, within Synpcc7942_0824 at 819.231 kb on + strand, within Synpcc7942_0824 at 819.231 kb on + strand, within Synpcc7942_0824 at 819.232 kb on - strand, within Synpcc7942_0824 at 819.232 kb on - strand, within Synpcc7942_0824 at 819.239 kb on - strand, within Synpcc7942_0824 at 819.239 kb on - strand, within Synpcc7942_0824 at 819.239 kb on - strand, within Synpcc7942_0824 at 819.303 kb on + strand, within Synpcc7942_0824 at 819.460 kb on - strand, within Synpcc7942_0824 at 819.516 kb on + strand, within Synpcc7942_0824 at 819.555 kb on + strand, within Synpcc7942_0824 at 819.610 kb on + strand, within Synpcc7942_0824 at 819.633 kb on + strand, within Synpcc7942_0824 at 819.708 kb on + strand, within Synpcc7942_0824 at 819.761 kb on - strand at 819.792 kb on + strand at 819.800 kb on - strand at 819.818 kb on + strand at 819.818 kb on + strand at 820.229 kb on - strand, within Synpcc7942_0825 at 820.349 kb on + strand, within Synpcc7942_0825 at 820.463 kb on + strand, within Synpcc7942_0825 at 820.623 kb on + strand at 820.623 kb on + strand at 820.647 kb on - strand at 820.671 kb on - strand at 820.701 kb on - strand at 820.731 kb on + strand at 820.748 kb on + strand at 820.752 kb on + strand at 820.797 kb on + strand, within Synpcc7942_0826 at 820.797 kb on + strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.833 kb on - strand, within Synpcc7942_0826 at 820.859 kb on + strand, within Synpcc7942_0826 at 820.868 kb on - strand, within Synpcc7942_0826 at 820.883 kb on + strand, within Synpcc7942_0826 at 820.883 kb on + strand, within Synpcc7942_0826
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 817,230 + -2.7 817,240 - -1.2 817,240 - +1.8 817,256 - -1.5 817,310 - Synpcc7942_0823 0.14 -0.7 817,315 - Synpcc7942_0823 0.14 +0.8 817,320 - Synpcc7942_0823 0.15 -1.6 817,320 - Synpcc7942_0823 0.15 -2.3 817,328 + Synpcc7942_0823 0.15 +0.3 817,328 + Synpcc7942_0823 0.15 -0.3 817,330 - Synpcc7942_0823 0.15 +0.3 817,336 - Synpcc7942_0823 0.16 -1.7 817,336 - Synpcc7942_0823 0.16 -0.4 817,342 + Synpcc7942_0823 0.17 -1.3 817,359 - Synpcc7942_0823 0.18 +0.3 817,369 - Synpcc7942_0823 0.19 -1.3 817,414 - Synpcc7942_0823 0.23 +0.5 817,430 - Synpcc7942_0823 0.25 -0.3 817,432 + Synpcc7942_0823 0.25 +1.4 817,469 - Synpcc7942_0823 0.29 +0.6 817,473 + -0.7 817,476 - Synpcc7942_0823 0.29 -1.2 817,476 - Synpcc7942_0823 0.29 +0.3 817,481 - Synpcc7942_0823 0.30 -0.7 817,485 + Synpcc7942_0823 0.30 +0.4 817,501 - Synpcc7942_0823 0.32 -0.3 817,573 + Synpcc7942_0823 0.39 -0.2 817,573 + Synpcc7942_0823 0.39 -1.3 817,573 + Synpcc7942_0823 0.39 -0.6 817,573 + Synpcc7942_0823 0.39 -2.9 817,573 + Synpcc7942_0823 0.39 +1.1 817,573 + Synpcc7942_0823 0.39 +0.6 817,573 + Synpcc7942_0823 0.39 -1.2 817,573 + Synpcc7942_0823 0.39 +0.3 817,573 + Synpcc7942_0823 0.39 +0.3 817,573 + Synpcc7942_0823 0.39 -2.1 817,573 + Synpcc7942_0823 0.39 -1.3 817,573 + Synpcc7942_0823 0.39 -0.1 817,573 + Synpcc7942_0823 0.39 -1.6 817,573 + Synpcc7942_0823 0.39 -0.4 817,573 + Synpcc7942_0823 0.39 +0.6 817,573 + Synpcc7942_0823 0.39 -0.6 817,575 + Synpcc7942_0823 0.39 +2.3 817,575 + Synpcc7942_0823 0.39 -2.6 817,575 + Synpcc7942_0823 0.39 +2.0 817,581 - +0.3 817,581 - Synpcc7942_0823 0.39 +0.3 817,581 - Synpcc7942_0823 0.39 +1.0 817,581 - Synpcc7942_0823 0.39 -0.4 817,581 - Synpcc7942_0823 0.39 -1.1 817,581 - Synpcc7942_0823 0.39 +1.5 817,581 - Synpcc7942_0823 0.39 -1.6 817,581 - Synpcc7942_0823 0.39 +0.7 817,581 - Synpcc7942_0823 0.39 -1.3 817,583 - Synpcc7942_0823 0.40 -1.7 817,585 + Synpcc7942_0823 0.40 +0.7 817,585 + Synpcc7942_0823 0.40 +1.8 817,585 + Synpcc7942_0823 0.40 +0.9 817,585 + Synpcc7942_0823 0.40 -2.6 817,585 + Synpcc7942_0823 0.40 -0.7 817,585 + Synpcc7942_0823 0.40 +0.5 817,593 - Synpcc7942_0823 0.41 -1.0 817,593 - Synpcc7942_0823 0.41 +1.3 817,593 - Synpcc7942_0823 0.41 +1.3 817,593 - Synpcc7942_0823 0.41 -1.3 817,593 - Synpcc7942_0823 0.41 +2.3 817,593 - Synpcc7942_0823 0.41 +0.4 817,593 - Synpcc7942_0823 0.41 -2.6 817,608 + Synpcc7942_0823 0.42 +0.3 817,616 - Synpcc7942_0823 0.43 +0.2 817,649 - +0.7 817,661 - Synpcc7942_0823 0.47 -1.9 817,664 - Synpcc7942_0823 0.47 -0.7 817,664 - Synpcc7942_0823 0.47 -1.7 817,675 + Synpcc7942_0823 0.48 -1.3 817,683 - Synpcc7942_0823 0.49 +1.1 817,697 - Synpcc7942_0823 0.51 +0.8 817,715 + Synpcc7942_0823 0.52 -0.1 817,723 + Synpcc7942_0823 0.53 -0.1 817,733 + Synpcc7942_0823 0.54 +0.8 817,735 + Synpcc7942_0823 0.54 -2.6 817,735 + Synpcc7942_0823 0.54 -0.3 817,735 + Synpcc7942_0823 0.54 -0.7 817,737 + Synpcc7942_0823 0.54 +2.5 817,743 - Synpcc7942_0823 0.55 -0.0 817,743 - Synpcc7942_0823 0.55 -1.3 817,789 - Synpcc7942_0823 0.59 +2.1 817,873 + Synpcc7942_0823 0.67 +0.7 817,904 + Synpcc7942_0823 0.70 -1.7 817,948 + Synpcc7942_0823 0.74 +1.3 818,032 - Synpcc7942_0823 0.83 +0.3 818,034 - Synpcc7942_0823 0.83 -1.6 818,051 + Synpcc7942_0823 0.84 -0.2 818,051 + Synpcc7942_0823 0.84 +0.7 818,059 - Synpcc7942_0823 0.85 +0.4 818,072 + Synpcc7942_0823 0.86 +1.7 818,087 - Synpcc7942_0823 0.88 +1.6 818,148 - +0.3 818,193 + +0.7 818,198 - -1.4 818,201 - -2.2 818,234 + +1.4 818,250 + +0.9 818,265 + -0.2 818,270 + -1.0 818,308 + -1.7 818,323 - -2.3 818,346 + +0.3 818,346 + +0.8 818,346 + +1.9 818,351 + +1.3 818,354 - +1.6 818,354 - +0.0 818,354 - +1.7 818,354 - +0.3 818,359 - +0.6 818,363 + Synpcc7942_0824 0.10 +1.1 818,378 + Synpcc7942_0824 0.11 +2.3 818,479 + Synpcc7942_0824 0.17 -0.3 818,479 + Synpcc7942_0824 0.17 +2.8 818,479 + Synpcc7942_0824 0.17 +0.3 818,487 - Synpcc7942_0824 0.17 +1.5 818,498 + Synpcc7942_0824 0.18 -2.2 818,506 - Synpcc7942_0824 0.19 +2.1 818,508 - Synpcc7942_0824 0.19 -1.7 818,508 - Synpcc7942_0824 0.19 +0.3 818,523 + Synpcc7942_0824 0.20 -2.8 818,537 + Synpcc7942_0824 0.20 +0.3 818,546 - Synpcc7942_0824 0.21 +2.6 818,589 - Synpcc7942_0824 0.23 +0.7 818,614 + Synpcc7942_0824 0.25 +0.9 818,628 + Synpcc7942_0824 0.26 -1.3 818,635 + Synpcc7942_0824 0.26 +0.9 818,645 + Synpcc7942_0824 0.27 -2.1 818,653 - Synpcc7942_0824 0.27 -1.2 818,653 - Synpcc7942_0824 0.27 -2.3 818,678 - Synpcc7942_0824 0.29 +0.3 818,678 - Synpcc7942_0824 0.29 -2.9 818,680 + Synpcc7942_0824 0.29 +0.3 818,680 + Synpcc7942_0824 0.29 +2.8 818,688 - Synpcc7942_0824 0.29 -0.6 818,688 - Synpcc7942_0824 0.29 -0.8 818,719 + Synpcc7942_0824 0.31 -1.7 818,793 + Synpcc7942_0824 0.35 +1.6 818,797 - Synpcc7942_0824 0.36 +0.5 818,803 - Synpcc7942_0824 0.36 +0.9 818,828 + Synpcc7942_0824 0.37 +0.1 818,863 + Synpcc7942_0824 0.39 +1.9 818,923 + Synpcc7942_0824 0.43 -3.1 818,938 + Synpcc7942_0824 0.44 +1.1 818,964 - Synpcc7942_0824 0.45 +1.1 818,969 - Synpcc7942_0824 0.46 -1.0 818,985 + Synpcc7942_0824 0.47 +0.6 818,985 + Synpcc7942_0824 0.47 -1.7 818,993 - Synpcc7942_0824 0.47 +0.6 818,993 - Synpcc7942_0824 0.47 -2.1 818,993 - Synpcc7942_0824 0.47 +1.5 818,993 - Synpcc7942_0824 0.47 -1.7 819,116 - Synpcc7942_0824 0.54 +0.5 819,116 - Synpcc7942_0824 0.54 +2.3 819,160 - Synpcc7942_0824 0.57 +0.1 819,175 + Synpcc7942_0824 0.58 +0.9 819,211 + Synpcc7942_0824 0.60 -0.3 819,216 + Synpcc7942_0824 0.60 -1.2 819,224 + Synpcc7942_0824 0.61 +0.3 819,231 + Synpcc7942_0824 0.61 -1.4 819,231 + Synpcc7942_0824 0.61 -0.0 819,231 + Synpcc7942_0824 0.61 +2.2 819,232 - Synpcc7942_0824 0.61 +1.1 819,232 - Synpcc7942_0824 0.61 +1.8 819,239 - Synpcc7942_0824 0.62 -1.3 819,239 - Synpcc7942_0824 0.62 +0.8 819,239 - Synpcc7942_0824 0.62 +0.4 819,303 + Synpcc7942_0824 0.65 +1.8 819,460 - Synpcc7942_0824 0.74 -1.3 819,516 + Synpcc7942_0824 0.78 +2.1 819,555 + Synpcc7942_0824 0.80 -4.6 819,610 + Synpcc7942_0824 0.83 +0.0 819,633 + Synpcc7942_0824 0.85 +0.7 819,708 + Synpcc7942_0824 0.89 +1.6 819,761 - +1.1 819,792 + -1.3 819,800 - +0.1 819,818 + -0.7 819,818 + -0.4 820,229 - Synpcc7942_0825 0.39 -4.9 820,349 + Synpcc7942_0825 0.56 -2.3 820,463 + Synpcc7942_0825 0.73 -3.9 820,623 + -5.5 820,623 + -1.9 820,647 - -1.7 820,671 - +0.3 820,701 - +1.9 820,731 + -1.3 820,748 + -2.6 820,752 + -3.6 820,797 + Synpcc7942_0826 0.11 -0.7 820,797 + Synpcc7942_0826 0.11 -4.0 820,805 - Synpcc7942_0826 0.12 -1.3 820,805 - Synpcc7942_0826 0.12 -0.7 820,805 - Synpcc7942_0826 0.12 -2.7 820,833 - Synpcc7942_0826 0.15 -2.3 820,859 + Synpcc7942_0826 0.18 -2.3 820,868 - Synpcc7942_0826 0.19 +0.3 820,883 + Synpcc7942_0826 0.20 -2.3 820,883 + Synpcc7942_0826 0.20 -0.9
Or see this region's nucleotide sequence