Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0779 and Synpcc7942_0780 overlap by 9 nucleotides Synpcc7942_0780 and ppsA are separated by 45 nucleotides
Synpcc7942_0779: Synpcc7942_0779 - metal dependent phosphohydrolase, at 770,131 to 772,593
_0779
Synpcc7942_0780: Synpcc7942_0780 - serine/threonine protein kinase, at 772,585 to 773,958
_0780
Synpcc7942_0781: ppsA - phosphoenolpyruvate synthase, at 774,004 to 776,520
ppsA
Position (kb) 772
773
774 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 772.439 kb on - strand at 772.489 kb on + strand at 772.567 kb on + strand at 772.572 kb on + strand at 772.572 kb on + strand at 772.572 kb on + strand at 772.638 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.697 kb on + strand at 772.705 kb on - strand at 772.748 kb on + strand, within Synpcc7942_0780 at 772.807 kb on - strand, within Synpcc7942_0780 at 772.807 kb on - strand, within Synpcc7942_0780 at 772.854 kb on - strand, within Synpcc7942_0780 at 772.996 kb on + strand, within Synpcc7942_0780 at 772.996 kb on + strand, within Synpcc7942_0780 at 773.047 kb on - strand, within Synpcc7942_0780 at 773.087 kb on + strand, within Synpcc7942_0780 at 773.095 kb on + strand, within Synpcc7942_0780 at 773.103 kb on - strand at 773.103 kb on - strand, within Synpcc7942_0780 at 773.136 kb on + strand, within Synpcc7942_0780 at 773.144 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.191 kb on + strand, within Synpcc7942_0780 at 773.230 kb on + strand, within Synpcc7942_0780 at 773.268 kb on + strand, within Synpcc7942_0780 at 773.276 kb on - strand, within Synpcc7942_0780 at 773.298 kb on - strand, within Synpcc7942_0780 at 773.337 kb on + strand, within Synpcc7942_0780 at 773.340 kb on - strand, within Synpcc7942_0780 at 773.351 kb on + strand, within Synpcc7942_0780 at 773.351 kb on + strand, within Synpcc7942_0780 at 773.357 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.372 kb on - strand, within Synpcc7942_0780 at 773.380 kb on - strand, within Synpcc7942_0780 at 773.382 kb on - strand, within Synpcc7942_0780 at 773.382 kb on - strand, within Synpcc7942_0780 at 773.388 kb on - strand, within Synpcc7942_0780 at 773.388 kb on - strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.410 kb on - strand, within Synpcc7942_0780 at 773.415 kb on - strand, within Synpcc7942_0780 at 773.431 kb on - strand, within Synpcc7942_0780 at 773.432 kb on - strand, within Synpcc7942_0780 at 773.458 kb on + strand, within Synpcc7942_0780 at 773.458 kb on + strand, within Synpcc7942_0780 at 773.466 kb on - strand, within Synpcc7942_0780 at 773.466 kb on - strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.491 kb on - strand at 773.491 kb on - strand, within Synpcc7942_0780 at 773.550 kb on + strand, within Synpcc7942_0780 at 773.550 kb on + strand, within Synpcc7942_0780 at 773.558 kb on - strand, within Synpcc7942_0780 at 773.558 kb on - strand, within Synpcc7942_0780 at 773.586 kb on - strand, within Synpcc7942_0780 at 773.592 kb on - strand, within Synpcc7942_0780 at 773.596 kb on + strand, within Synpcc7942_0780 at 773.599 kb on + strand, within Synpcc7942_0780 at 773.599 kb on - strand, within Synpcc7942_0780 at 773.607 kb on + strand, within Synpcc7942_0780 at 773.615 kb on - strand, within Synpcc7942_0780 at 773.668 kb on - strand, within Synpcc7942_0780 at 773.684 kb on - strand, within Synpcc7942_0780 at 773.686 kb on + strand, within Synpcc7942_0780 at 773.704 kb on + strand, within Synpcc7942_0780 at 773.709 kb on - strand, within Synpcc7942_0780 at 773.711 kb on + strand, within Synpcc7942_0780 at 773.757 kb on - strand, within Synpcc7942_0780 at 773.851 kb on + strand at 773.875 kb on + strand at 773.880 kb on + strand at 773.893 kb on - strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.898 kb on + strand at 773.903 kb on - strand at 773.908 kb on + strand at 773.926 kb on + strand at 773.926 kb on + strand at 773.959 kb on - strand at 773.959 kb on - strand at 773.961 kb on - strand at 773.982 kb on + strand at 773.982 kb on + strand at 773.982 kb on + strand at 773.990 kb on - strand at 773.990 kb on - strand at 773.994 kb on + strand at 774.000 kb on - strand at 774.002 kb on - strand at 774.010 kb on - strand at 774.010 kb on - strand at 774.015 kb on - strand at 774.017 kb on + strand at 774.025 kb on - strand at 774.025 kb on - strand at 774.044 kb on + strand at 774.082 kb on - strand at 774.082 kb on - strand at 774.093 kb on - strand at 774.184 kb on - strand at 774.185 kb on - strand at 774.235 kb on + strand at 774.267 kb on - strand, within ppsA at 774.291 kb on + strand, within ppsA at 774.294 kb on - strand, within ppsA at 774.299 kb on - strand, within ppsA at 774.315 kb on + strand, within ppsA at 774.336 kb on + strand, within ppsA at 774.336 kb on - strand, within ppsA at 774.344 kb on - strand, within ppsA at 774.346 kb on + strand, within ppsA at 774.353 kb on + strand, within ppsA at 774.354 kb on - strand, within ppsA at 774.361 kb on - strand, within ppsA at 774.363 kb on + strand, within ppsA at 774.363 kb on - strand, within ppsA at 774.371 kb on - strand, within ppsA at 774.374 kb on + strand, within ppsA at 774.378 kb on - strand, within ppsA at 774.382 kb on - strand, within ppsA at 774.425 kb on + strand, within ppsA at 774.445 kb on + strand, within ppsA at 774.463 kb on - strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.485 kb on - strand, within ppsA at 774.489 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.492 kb on + strand, within ppsA at 774.495 kb on - strand, within ppsA at 774.512 kb on + strand, within ppsA at 774.543 kb on + strand, within ppsA at 774.543 kb on - strand, within ppsA at 774.558 kb on + strand, within ppsA at 774.566 kb on - strand at 774.566 kb on - strand, within ppsA at 774.620 kb on - strand, within ppsA at 774.723 kb on + strand, within ppsA at 774.731 kb on - strand, within ppsA at 774.813 kb on + strand, within ppsA at 774.821 kb on - strand, within ppsA at 774.872 kb on + strand, within ppsA at 774.875 kb on - strand, within ppsA at 774.890 kb on - strand, within ppsA at 774.890 kb on - strand, within ppsA at 774.912 kb on + strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.921 kb on - strand, within ppsA at 774.954 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on - strand, within ppsA at 774.956 kb on - strand, within ppsA
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 772,439 - -3.1 772,489 + -1.4 772,567 + +2.4 772,572 + +0.3 772,572 + +1.3 772,572 + -0.8 772,638 + -0.8 772,696 + -0.6 772,696 + +1.6 772,697 + +1.7 772,705 - +1.8 772,748 + Synpcc7942_0780 0.12 -0.9 772,807 - Synpcc7942_0780 0.16 +1.2 772,807 - Synpcc7942_0780 0.16 -2.4 772,854 - Synpcc7942_0780 0.20 +0.8 772,996 + Synpcc7942_0780 0.30 -0.8 772,996 + Synpcc7942_0780 0.30 +2.0 773,047 - Synpcc7942_0780 0.34 -2.9 773,087 + Synpcc7942_0780 0.37 -0.8 773,095 + Synpcc7942_0780 0.37 +0.3 773,103 - +0.2 773,103 - Synpcc7942_0780 0.38 +4.0 773,136 + Synpcc7942_0780 0.40 +0.3 773,144 - Synpcc7942_0780 0.41 -1.1 773,160 - Synpcc7942_0780 0.42 -1.4 773,160 - Synpcc7942_0780 0.42 +0.6 773,160 - Synpcc7942_0780 0.42 +0.9 773,191 + Synpcc7942_0780 0.44 -0.0 773,230 + Synpcc7942_0780 0.47 +0.2 773,268 + Synpcc7942_0780 0.50 -1.9 773,276 - Synpcc7942_0780 0.50 +1.2 773,298 - Synpcc7942_0780 0.52 +2.1 773,337 + Synpcc7942_0780 0.55 -2.6 773,340 - Synpcc7942_0780 0.55 -1.8 773,351 + Synpcc7942_0780 0.56 -0.8 773,351 + Synpcc7942_0780 0.56 -0.8 773,357 - Synpcc7942_0780 0.56 -0.8 773,359 - Synpcc7942_0780 0.56 -1.4 773,359 - Synpcc7942_0780 0.56 -0.8 773,359 - Synpcc7942_0780 0.56 +0.8 773,372 - Synpcc7942_0780 0.57 +3.2 773,380 - Synpcc7942_0780 0.58 +1.0 773,382 - Synpcc7942_0780 0.58 +1.4 773,382 - Synpcc7942_0780 0.58 -0.8 773,388 - Synpcc7942_0780 0.58 -0.4 773,388 - Synpcc7942_0780 0.58 +2.6 773,402 + Synpcc7942_0780 0.59 +0.8 773,402 + Synpcc7942_0780 0.59 +0.8 773,402 + Synpcc7942_0780 0.59 +3.1 773,402 + Synpcc7942_0780 0.59 +0.5 773,410 - Synpcc7942_0780 0.60 +0.9 773,415 - Synpcc7942_0780 0.60 -0.4 773,431 - Synpcc7942_0780 0.62 +0.1 773,432 - Synpcc7942_0780 0.62 +0.5 773,458 + Synpcc7942_0780 0.64 -1.0 773,458 + Synpcc7942_0780 0.64 -0.6 773,466 - Synpcc7942_0780 0.64 -0.8 773,466 - Synpcc7942_0780 0.64 +1.0 773,483 + Synpcc7942_0780 0.65 +2.3 773,483 + Synpcc7942_0780 0.65 +0.0 773,483 + Synpcc7942_0780 0.65 -1.4 773,491 - +0.2 773,491 - Synpcc7942_0780 0.66 +0.5 773,550 + Synpcc7942_0780 0.70 +0.5 773,550 + Synpcc7942_0780 0.70 -4.7 773,558 - Synpcc7942_0780 0.71 -1.8 773,558 - Synpcc7942_0780 0.71 -2.1 773,586 - Synpcc7942_0780 0.73 +0.0 773,592 - Synpcc7942_0780 0.73 +0.2 773,596 + Synpcc7942_0780 0.74 +0.6 773,599 + Synpcc7942_0780 0.74 -1.8 773,599 - Synpcc7942_0780 0.74 +2.2 773,607 + Synpcc7942_0780 0.74 +0.5 773,615 - Synpcc7942_0780 0.75 +0.6 773,668 - Synpcc7942_0780 0.79 -1.5 773,684 - Synpcc7942_0780 0.80 +1.2 773,686 + Synpcc7942_0780 0.80 +0.4 773,704 + Synpcc7942_0780 0.81 +0.8 773,709 - Synpcc7942_0780 0.82 -0.4 773,711 + Synpcc7942_0780 0.82 -0.3 773,757 - Synpcc7942_0780 0.85 +0.2 773,851 + +0.7 773,875 + -0.2 773,880 + +0.9 773,893 - +0.6 773,895 + -1.4 773,895 + +0.2 773,895 + -2.1 773,895 + -0.4 773,898 + +0.9 773,903 - -0.3 773,908 + -2.1 773,926 + +0.6 773,926 + -2.6 773,959 - +0.8 773,959 - -1.4 773,961 - +1.7 773,982 + -1.4 773,982 + -2.9 773,982 + -0.3 773,990 - +2.3 773,990 - +2.0 773,994 + -0.3 774,000 - +1.9 774,002 - -0.8 774,010 - +0.2 774,010 - +0.0 774,015 - -2.7 774,017 + +0.6 774,025 - +0.4 774,025 - +0.2 774,044 + +0.9 774,082 - -1.1 774,082 - -2.1 774,093 - -2.1 774,184 - +0.0 774,185 - +0.6 774,235 + -0.8 774,267 - ppsA Synpcc7942_0781 0.10 +2.6 774,291 + ppsA Synpcc7942_0781 0.11 -2.9 774,294 - ppsA Synpcc7942_0781 0.12 -1.1 774,299 - ppsA Synpcc7942_0781 0.12 +0.5 774,315 + ppsA Synpcc7942_0781 0.12 +0.7 774,336 + ppsA Synpcc7942_0781 0.13 +0.1 774,336 - ppsA Synpcc7942_0781 0.13 +0.2 774,344 - ppsA Synpcc7942_0781 0.14 -1.1 774,346 + ppsA Synpcc7942_0781 0.14 -2.4 774,353 + ppsA Synpcc7942_0781 0.14 -2.8 774,354 - ppsA Synpcc7942_0781 0.14 +2.2 774,361 - ppsA Synpcc7942_0781 0.14 +0.6 774,363 + ppsA Synpcc7942_0781 0.14 -0.0 774,363 - ppsA Synpcc7942_0781 0.14 +2.2 774,371 - ppsA Synpcc7942_0781 0.15 -3.4 774,374 + ppsA Synpcc7942_0781 0.15 -0.8 774,378 - ppsA Synpcc7942_0781 0.15 +0.8 774,382 - ppsA Synpcc7942_0781 0.15 -0.4 774,425 + ppsA Synpcc7942_0781 0.17 -0.3 774,445 + ppsA Synpcc7942_0781 0.18 -2.1 774,463 - ppsA Synpcc7942_0781 0.18 -0.6 774,482 + ppsA Synpcc7942_0781 0.19 -2.5 774,482 + ppsA Synpcc7942_0781 0.19 +0.4 774,482 + ppsA Synpcc7942_0781 0.19 +0.4 774,485 - ppsA Synpcc7942_0781 0.19 +0.7 774,489 - ppsA Synpcc7942_0781 0.19 +0.6 774,490 - ppsA Synpcc7942_0781 0.19 +1.0 774,490 - ppsA Synpcc7942_0781 0.19 -0.9 774,490 - ppsA Synpcc7942_0781 0.19 +0.0 774,490 - ppsA Synpcc7942_0781 0.19 +0.9 774,490 - ppsA Synpcc7942_0781 0.19 +0.2 774,490 - ppsA Synpcc7942_0781 0.19 -1.4 774,492 + ppsA Synpcc7942_0781 0.19 +0.6 774,495 - ppsA Synpcc7942_0781 0.20 -1.0 774,512 + ppsA Synpcc7942_0781 0.20 -0.2 774,543 + ppsA Synpcc7942_0781 0.21 +0.9 774,543 - ppsA Synpcc7942_0781 0.21 +2.6 774,558 + ppsA Synpcc7942_0781 0.22 +2.1 774,566 - +3.0 774,566 - ppsA Synpcc7942_0781 0.22 -0.8 774,620 - ppsA Synpcc7942_0781 0.24 -2.4 774,723 + ppsA Synpcc7942_0781 0.29 -0.8 774,731 - ppsA Synpcc7942_0781 0.29 -1.8 774,813 + ppsA Synpcc7942_0781 0.32 +1.2 774,821 - ppsA Synpcc7942_0781 0.32 -0.4 774,872 + ppsA Synpcc7942_0781 0.34 +0.6 774,875 - ppsA Synpcc7942_0781 0.35 +0.7 774,890 - ppsA Synpcc7942_0781 0.35 -0.5 774,890 - ppsA Synpcc7942_0781 0.35 -0.5 774,912 + ppsA Synpcc7942_0781 0.36 -2.1 774,920 - ppsA Synpcc7942_0781 0.36 +0.4 774,920 - ppsA Synpcc7942_0781 0.36 -1.4 774,920 - ppsA Synpcc7942_0781 0.36 +0.9 774,921 - ppsA Synpcc7942_0781 0.36 -1.8 774,954 + ppsA Synpcc7942_0781 0.38 -0.8 774,956 + ppsA Synpcc7942_0781 0.38 -0.2 774,956 + ppsA Synpcc7942_0781 0.38 +1.4 774,956 + ppsA Synpcc7942_0781 0.38 -0.8 774,956 - ppsA Synpcc7942_0781 0.38 +0.6 774,956 - ppsA Synpcc7942_0781 0.38 -2.1
Or see this region's nucleotide sequence