Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0779

Experiment: Bacitracin 0.0009765625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfolD and Synpcc7942_0778 are separated by 35 nucleotidesSynpcc7942_0778 and Synpcc7942_0779 are separated by 92 nucleotidesSynpcc7942_0779 and Synpcc7942_0780 overlap by 9 nucleotides Synpcc7942_0777: folD - Methenyltetrahydrofolate cyclohydrolase, at 768,669 to 769,538 folD Synpcc7942_0778: Synpcc7942_0778 - hypothetical protein, at 769,574 to 770,038 _0778 Synpcc7942_0779: Synpcc7942_0779 - metal dependent phosphohydrolase, at 770,131 to 772,593 _0779 Synpcc7942_0780: Synpcc7942_0780 - serine/threonine protein kinase, at 772,585 to 773,958 _0780 Position (kb) 770 771 772 773Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 769.541 kb on + strandat 769.549 kb on - strandat 769.594 kb on - strandat 770.006 kb on + strandat 770.006 kb on + strandat 770.006 kb on + strandat 770.020 kb on + strandat 770.032 kb on + strandat 770.032 kb on + strandat 770.032 kb on + strandat 770.038 kb on + strandat 770.040 kb on - strandat 770.040 kb on - strandat 770.040 kb on - strandat 770.040 kb on - strandat 770.040 kb on - strandat 770.043 kb on + strandat 770.051 kb on + strandat 770.051 kb on - strandat 770.051 kb on - strandat 770.059 kb on - strandat 770.074 kb on - strandat 770.077 kb on + strandat 770.077 kb on + strandat 770.085 kb on - strandat 770.087 kb on - strandat 770.092 kb on + strandat 770.110 kb on - strandat 770.126 kb on + strandat 770.126 kb on + strandat 770.134 kb on - strandat 770.134 kb on - strandat 770.134 kb on - strandat 770.148 kb on + strandat 770.156 kb on + strandat 770.190 kb on - strandat 770.231 kb on - strandat 770.289 kb on - strandat 770.289 kb on - strandat 770.346 kb on - strandat 771.364 kb on - strand, within Synpcc7942_0779at 771.488 kb on - strandat 772.439 kb on - strandat 772.489 kb on + strandat 772.567 kb on + strandat 772.572 kb on + strandat 772.572 kb on + strandat 772.572 kb on + strandat 772.638 kb on + strandat 772.696 kb on + strandat 772.696 kb on + strandat 772.697 kb on + strandat 772.705 kb on - strandat 772.748 kb on + strand, within Synpcc7942_0780at 772.807 kb on - strand, within Synpcc7942_0780at 772.807 kb on - strand, within Synpcc7942_0780at 772.854 kb on - strand, within Synpcc7942_0780at 772.996 kb on + strand, within Synpcc7942_0780at 772.996 kb on + strand, within Synpcc7942_0780at 773.047 kb on - strand, within Synpcc7942_0780at 773.087 kb on + strand, within Synpcc7942_0780at 773.095 kb on + strand, within Synpcc7942_0780at 773.103 kb on - strandat 773.103 kb on - strand, within Synpcc7942_0780at 773.136 kb on + strand, within Synpcc7942_0780at 773.144 kb on - strand, within Synpcc7942_0780at 773.160 kb on - strand, within Synpcc7942_0780at 773.160 kb on - strand, within Synpcc7942_0780at 773.160 kb on - strand, within Synpcc7942_0780at 773.191 kb on + strand, within Synpcc7942_0780at 773.230 kb on + strand, within Synpcc7942_0780at 773.268 kb on + strand, within Synpcc7942_0780at 773.276 kb on - strand, within Synpcc7942_0780at 773.298 kb on - strand, within Synpcc7942_0780at 773.337 kb on + strand, within Synpcc7942_0780at 773.340 kb on - strand, within Synpcc7942_0780at 773.351 kb on + strand, within Synpcc7942_0780at 773.351 kb on + strand, within Synpcc7942_0780at 773.357 kb on - strand, within Synpcc7942_0780at 773.359 kb on - strand, within Synpcc7942_0780at 773.359 kb on - strand, within Synpcc7942_0780at 773.359 kb on - strand, within Synpcc7942_0780at 773.372 kb on - strand, within Synpcc7942_0780at 773.380 kb on - strand, within Synpcc7942_0780at 773.382 kb on - strand, within Synpcc7942_0780at 773.382 kb on - strand, within Synpcc7942_0780at 773.388 kb on - strand, within Synpcc7942_0780at 773.388 kb on - strand, within Synpcc7942_0780at 773.402 kb on + strand, within Synpcc7942_0780at 773.402 kb on + strand, within Synpcc7942_0780at 773.402 kb on + strand, within Synpcc7942_0780at 773.402 kb on + strand, within Synpcc7942_0780at 773.410 kb on - strand, within Synpcc7942_0780at 773.415 kb on - strand, within Synpcc7942_0780at 773.431 kb on - strand, within Synpcc7942_0780at 773.432 kb on - strand, within Synpcc7942_0780at 773.458 kb on + strand, within Synpcc7942_0780at 773.458 kb on + strand, within Synpcc7942_0780at 773.466 kb on - strand, within Synpcc7942_0780at 773.466 kb on - strand, within Synpcc7942_0780at 773.483 kb on + strand, within Synpcc7942_0780at 773.483 kb on + strand, within Synpcc7942_0780at 773.483 kb on + strand, within Synpcc7942_0780at 773.491 kb on - strandat 773.491 kb on - strand, within Synpcc7942_0780at 773.550 kb on + strand, within Synpcc7942_0780at 773.550 kb on + strand, within Synpcc7942_0780at 773.558 kb on - strand, within Synpcc7942_0780at 773.558 kb on - strand, within Synpcc7942_0780at 773.586 kb on - strand, within Synpcc7942_0780at 773.592 kb on - strand, within Synpcc7942_0780

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml
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769,541 + -0.4
769,549 - -0.7
769,594 - +0.3
770,006 + +0.2
770,006 + -1.8
770,006 + +0.2
770,020 + +1.1
770,032 + +1.9
770,032 + -0.2
770,032 + +2.0
770,038 + +0.3
770,040 - +1.6
770,040 - -1.8
770,040 - +0.5
770,040 - +3.3
770,040 - +0.2
770,043 + -1.8
770,051 + -1.0
770,051 - +1.2
770,051 - +0.8
770,059 - +0.8
770,074 - +0.2
770,077 + +2.2
770,077 + +0.9
770,085 - +0.7
770,087 - +2.4
770,092 + +1.1
770,110 - -1.2
770,126 + -0.6
770,126 + +1.6
770,134 - +0.2
770,134 - +1.6
770,134 - +0.9
770,148 + +0.9
770,156 + +1.1
770,190 - -2.4
770,231 - -0.0
770,289 - +2.0
770,289 - -2.9
770,346 - +1.7
771,364 - Synpcc7942_0779 0.50 -4.6
771,488 - +1.8
772,439 - -3.1
772,489 + -1.4
772,567 + +2.4
772,572 + +0.3
772,572 + +1.3
772,572 + -0.8
772,638 + -0.8
772,696 + -0.6
772,696 + +1.6
772,697 + +1.7
772,705 - +1.8
772,748 + Synpcc7942_0780 0.12 -0.9
772,807 - Synpcc7942_0780 0.16 +1.2
772,807 - Synpcc7942_0780 0.16 -2.4
772,854 - Synpcc7942_0780 0.20 +0.8
772,996 + Synpcc7942_0780 0.30 -0.8
772,996 + Synpcc7942_0780 0.30 +2.0
773,047 - Synpcc7942_0780 0.34 -2.9
773,087 + Synpcc7942_0780 0.37 -0.8
773,095 + Synpcc7942_0780 0.37 +0.3
773,103 - +0.2
773,103 - Synpcc7942_0780 0.38 +4.0
773,136 + Synpcc7942_0780 0.40 +0.3
773,144 - Synpcc7942_0780 0.41 -1.1
773,160 - Synpcc7942_0780 0.42 -1.4
773,160 - Synpcc7942_0780 0.42 +0.6
773,160 - Synpcc7942_0780 0.42 +0.9
773,191 + Synpcc7942_0780 0.44 -0.0
773,230 + Synpcc7942_0780 0.47 +0.2
773,268 + Synpcc7942_0780 0.50 -1.9
773,276 - Synpcc7942_0780 0.50 +1.2
773,298 - Synpcc7942_0780 0.52 +2.1
773,337 + Synpcc7942_0780 0.55 -2.6
773,340 - Synpcc7942_0780 0.55 -1.8
773,351 + Synpcc7942_0780 0.56 -0.8
773,351 + Synpcc7942_0780 0.56 -0.8
773,357 - Synpcc7942_0780 0.56 -0.8
773,359 - Synpcc7942_0780 0.56 -1.4
773,359 - Synpcc7942_0780 0.56 -0.8
773,359 - Synpcc7942_0780 0.56 +0.8
773,372 - Synpcc7942_0780 0.57 +3.2
773,380 - Synpcc7942_0780 0.58 +1.0
773,382 - Synpcc7942_0780 0.58 +1.4
773,382 - Synpcc7942_0780 0.58 -0.8
773,388 - Synpcc7942_0780 0.58 -0.4
773,388 - Synpcc7942_0780 0.58 +2.6
773,402 + Synpcc7942_0780 0.59 +0.8
773,402 + Synpcc7942_0780 0.59 +0.8
773,402 + Synpcc7942_0780 0.59 +3.1
773,402 + Synpcc7942_0780 0.59 +0.5
773,410 - Synpcc7942_0780 0.60 +0.9
773,415 - Synpcc7942_0780 0.60 -0.4
773,431 - Synpcc7942_0780 0.62 +0.1
773,432 - Synpcc7942_0780 0.62 +0.5
773,458 + Synpcc7942_0780 0.64 -1.0
773,458 + Synpcc7942_0780 0.64 -0.6
773,466 - Synpcc7942_0780 0.64 -0.8
773,466 - Synpcc7942_0780 0.64 +1.0
773,483 + Synpcc7942_0780 0.65 +2.3
773,483 + Synpcc7942_0780 0.65 +0.0
773,483 + Synpcc7942_0780 0.65 -1.4
773,491 - +0.2
773,491 - Synpcc7942_0780 0.66 +0.5
773,550 + Synpcc7942_0780 0.70 +0.5
773,550 + Synpcc7942_0780 0.70 -4.7
773,558 - Synpcc7942_0780 0.71 -1.8
773,558 - Synpcc7942_0780 0.71 -2.1
773,586 - Synpcc7942_0780 0.73 +0.0
773,592 - Synpcc7942_0780 0.73 +0.2

Or see this region's nucleotide sequence