Experiment: Bacitracin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcd and Synpcc7942_0718 are separated by 26 nucleotides Synpcc7942_0718 and Synpcc7942_0719 overlap by 4 nucleotides Synpcc7942_0719 and Synpcc7942_0720 are separated by 219 nucleotides
Synpcc7942_0717: dcd - dCTP deaminase, at 713,127 to 713,651
dcd
Synpcc7942_0718: Synpcc7942_0718 - hypothetical protein, at 713,678 to 714,331
_0718
Synpcc7942_0719: Synpcc7942_0719 - hypothetical protein, at 714,328 to 714,831
_0719
Synpcc7942_0720: Synpcc7942_0720 - hypothetical protein, at 715,051 to 715,389
_0720
Position (kb) 713
714
715 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 712.684 kb on + strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.743 kb on - strand at 712.750 kb on - strand at 712.750 kb on - strand at 712.819 kb on + strand at 712.883 kb on + strand at 712.887 kb on + strand at 712.895 kb on + strand at 712.930 kb on - strand at 712.949 kb on - strand at 712.973 kb on - strand at 712.996 kb on - strand at 713.020 kb on + strand at 713.043 kb on + strand at 713.054 kb on + strand at 713.062 kb on - strand at 713.064 kb on + strand at 713.067 kb on - strand at 713.097 kb on + strand at 713.098 kb on + strand at 713.104 kb on + strand at 713.112 kb on - strand at 713.114 kb on - strand at 713.125 kb on + strand at 713.133 kb on - strand at 713.159 kb on + strand at 713.159 kb on + strand at 713.163 kb on - strand at 713.163 kb on - strand at 713.167 kb on - strand at 713.191 kb on + strand, within dcd at 713.191 kb on + strand, within dcd at 713.199 kb on - strand, within dcd at 713.199 kb on - strand, within dcd at 713.202 kb on + strand, within dcd at 713.249 kb on + strand, within dcd at 713.249 kb on + strand, within dcd at 713.249 kb on + strand, within dcd at 713.249 kb on + strand at 713.259 kb on + strand, within dcd at 713.267 kb on - strand, within dcd at 713.294 kb on + strand, within dcd at 713.294 kb on + strand, within dcd at 713.301 kb on + strand, within dcd at 713.306 kb on + strand, within dcd at 713.306 kb on + strand, within dcd at 713.314 kb on - strand, within dcd at 713.322 kb on - strand, within dcd at 713.324 kb on - strand, within dcd at 713.349 kb on - strand, within dcd at 713.349 kb on - strand, within dcd at 713.349 kb on - strand, within dcd at 713.351 kb on + strand, within dcd at 713.376 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.437 kb on + strand, within dcd at 713.445 kb on - strand, within dcd at 713.447 kb on + strand, within dcd at 713.453 kb on - strand, within dcd at 713.456 kb on + strand, within dcd at 713.472 kb on - strand, within dcd at 713.473 kb on - strand, within dcd at 713.479 kb on + strand, within dcd at 713.489 kb on - strand, within dcd at 713.510 kb on + strand, within dcd at 713.510 kb on + strand, within dcd at 713.518 kb on - strand, within dcd at 713.518 kb on - strand, within dcd at 713.558 kb on + strand, within dcd at 713.563 kb on + strand, within dcd at 713.568 kb on + strand, within dcd at 713.572 kb on + strand, within dcd at 713.577 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.590 kb on - strand, within dcd at 713.590 kb on - strand, within dcd at 713.590 kb on - strand, within dcd at 713.590 kb on - strand, within dcd at 713.719 kb on - strand at 713.720 kb on + strand at 713.754 kb on + strand, within Synpcc7942_0718 at 713.754 kb on - strand, within Synpcc7942_0718 at 713.781 kb on + strand, within Synpcc7942_0718 at 713.803 kb on + strand, within Synpcc7942_0718 at 713.822 kb on + strand, within Synpcc7942_0718 at 713.840 kb on - strand, within Synpcc7942_0718 at 713.846 kb on + strand, within Synpcc7942_0718 at 713.846 kb on + strand, within Synpcc7942_0718 at 713.847 kb on + strand, within Synpcc7942_0718 at 713.847 kb on + strand, within Synpcc7942_0718 at 713.847 kb on + strand, within Synpcc7942_0718 at 713.850 kb on - strand, within Synpcc7942_0718 at 713.851 kb on + strand, within Synpcc7942_0718 at 713.854 kb on - strand, within Synpcc7942_0718 at 713.854 kb on - strand, within Synpcc7942_0718 at 713.856 kb on + strand, within Synpcc7942_0718 at 713.886 kb on - strand, within Synpcc7942_0718 at 713.910 kb on - strand, within Synpcc7942_0718 at 713.931 kb on - strand, within Synpcc7942_0718 at 713.933 kb on - strand, within Synpcc7942_0718 at 713.943 kb on + strand, within Synpcc7942_0718 at 713.951 kb on - strand, within Synpcc7942_0718 at 713.952 kb on + strand, within Synpcc7942_0718 at 713.970 kb on + strand, within Synpcc7942_0718 at 713.978 kb on - strand, within Synpcc7942_0718 at 713.978 kb on - strand, within Synpcc7942_0718 at 713.978 kb on - strand, within Synpcc7942_0718 at 713.998 kb on - strand, within Synpcc7942_0718 at 714.013 kb on - strand, within Synpcc7942_0718 at 714.021 kb on - strand, within Synpcc7942_0718 at 714.042 kb on + strand at 714.058 kb on + strand, within Synpcc7942_0718 at 714.060 kb on - strand, within Synpcc7942_0718 at 714.070 kb on + strand, within Synpcc7942_0718 at 714.075 kb on + strand, within Synpcc7942_0718 at 714.075 kb on + strand, within Synpcc7942_0718 at 714.078 kb on - strand, within Synpcc7942_0718 at 714.080 kb on + strand, within Synpcc7942_0718 at 714.083 kb on - strand, within Synpcc7942_0718 at 714.083 kb on - strand, within Synpcc7942_0718 at 714.104 kb on - strand, within Synpcc7942_0718 at 714.104 kb on - strand, within Synpcc7942_0718 at 714.137 kb on - strand, within Synpcc7942_0718 at 714.143 kb on - strand, within Synpcc7942_0718 at 714.144 kb on + strand, within Synpcc7942_0718 at 714.145 kb on - strand, within Synpcc7942_0718 at 714.163 kb on + strand, within Synpcc7942_0718 at 714.167 kb on + strand, within Synpcc7942_0718 at 714.180 kb on - strand, within Synpcc7942_0718 at 714.182 kb on + strand, within Synpcc7942_0718 at 714.182 kb on + strand, within Synpcc7942_0718 at 714.205 kb on + strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.221 kb on - strand, within Synpcc7942_0718 at 714.282 kb on - strand at 714.309 kb on + strand at 714.335 kb on - strand at 714.367 kb on - strand at 714.381 kb on - strand, within Synpcc7942_0719 at 714.391 kb on - strand, within Synpcc7942_0719 at 714.456 kb on + strand, within Synpcc7942_0719 at 714.469 kb on - strand, within Synpcc7942_0719 at 714.506 kb on - strand, within Synpcc7942_0719 at 714.516 kb on - strand, within Synpcc7942_0719 at 714.516 kb on - strand, within Synpcc7942_0719 at 714.519 kb on + strand, within Synpcc7942_0719 at 714.519 kb on + strand, within Synpcc7942_0719 at 714.529 kb on + strand, within Synpcc7942_0719 at 714.529 kb on + strand, within Synpcc7942_0719 at 714.537 kb on - strand, within Synpcc7942_0719 at 714.539 kb on - strand at 714.581 kb on - strand, within Synpcc7942_0719 at 714.671 kb on + strand, within Synpcc7942_0719 at 714.718 kb on + strand, within Synpcc7942_0719 at 714.746 kb on + strand, within Synpcc7942_0719 at 714.762 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.773 kb on + strand, within Synpcc7942_0719 at 714.778 kb on + strand, within Synpcc7942_0719 at 714.781 kb on - strand at 714.781 kb on - strand at 714.781 kb on - strand at 714.783 kb on + strand at 714.790 kb on + strand at 714.793 kb on - strand at 714.798 kb on - strand at 714.803 kb on - strand at 714.831 kb on + strand at 714.831 kb on + strand at 714.839 kb on - strand at 714.839 kb on - strand at 714.841 kb on + strand at 714.844 kb on + strand at 714.849 kb on + strand at 714.880 kb on - strand at 714.880 kb on - strand at 714.882 kb on + strand at 714.889 kb on - strand at 714.904 kb on + strand at 714.910 kb on + strand at 714.912 kb on - strand at 714.912 kb on - strand at 714.915 kb on + strand at 714.918 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.925 kb on + strand at 714.930 kb on + strand at 714.933 kb on - strand at 714.938 kb on - strand at 714.948 kb on - strand at 714.977 kb on - strand at 714.979 kb on - strand at 714.995 kb on - strand at 715.006 kb on + strand at 715.007 kb on + strand at 715.018 kb on + strand at 715.040 kb on - strand at 715.056 kb on + strand at 715.064 kb on - strand at 715.064 kb on - strand at 715.068 kb on + strand at 715.125 kb on + strand, within Synpcc7942_0720 at 715.194 kb on + strand, within Synpcc7942_0720 at 715.196 kb on - strand at 715.202 kb on - strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.274 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.0009765625 mg/ml remove 712,684 + +0.3 712,693 - -1.4 712,693 - +1.3 712,693 - +0.0 712,743 - -1.3 712,750 - -1.7 712,750 - -1.3 712,819 + +0.5 712,883 + +2.7 712,887 + +0.3 712,895 + +1.0 712,930 - +0.2 712,949 - -4.3 712,973 - -1.7 712,996 - -1.0 713,020 + -2.7 713,043 + -1.7 713,054 + +0.9 713,062 - -0.2 713,064 + +0.4 713,067 - -2.1 713,097 + +0.7 713,098 + +0.3 713,104 + +1.3 713,112 - -0.4 713,114 - +0.5 713,125 + -2.3 713,133 - +1.2 713,159 + +1.1 713,159 + -0.3 713,163 - -0.7 713,163 - +1.0 713,167 - +0.4 713,191 + dcd Synpcc7942_0717 0.12 -2.5 713,191 + dcd Synpcc7942_0717 0.12 -0.7 713,199 - dcd Synpcc7942_0717 0.14 +0.4 713,199 - dcd Synpcc7942_0717 0.14 +1.1 713,202 + dcd Synpcc7942_0717 0.14 -1.7 713,249 + dcd Synpcc7942_0717 0.23 -1.0 713,249 + dcd Synpcc7942_0717 0.23 +1.3 713,249 + dcd Synpcc7942_0717 0.23 -0.4 713,249 + +0.3 713,259 + dcd Synpcc7942_0717 0.25 -0.3 713,267 - dcd Synpcc7942_0717 0.27 -0.7 713,294 + dcd Synpcc7942_0717 0.32 +1.3 713,294 + dcd Synpcc7942_0717 0.32 -0.7 713,301 + dcd Synpcc7942_0717 0.33 -0.3 713,306 + dcd Synpcc7942_0717 0.34 -2.1 713,306 + dcd Synpcc7942_0717 0.34 +0.3 713,314 - dcd Synpcc7942_0717 0.36 -2.1 713,322 - dcd Synpcc7942_0717 0.37 -1.7 713,324 - dcd Synpcc7942_0717 0.38 +0.3 713,349 - dcd Synpcc7942_0717 0.42 +0.3 713,349 - dcd Synpcc7942_0717 0.42 +1.7 713,349 - dcd Synpcc7942_0717 0.42 +0.7 713,351 + dcd Synpcc7942_0717 0.43 -0.7 713,376 + dcd Synpcc7942_0717 0.47 +0.8 713,413 + dcd Synpcc7942_0717 0.54 -1.5 713,413 + dcd Synpcc7942_0717 0.54 -0.3 713,413 + dcd Synpcc7942_0717 0.54 -3.5 713,413 + dcd Synpcc7942_0717 0.54 -0.4 713,413 + dcd Synpcc7942_0717 0.54 +1.8 713,431 - dcd Synpcc7942_0717 0.58 +0.1 713,431 - dcd Synpcc7942_0717 0.58 +0.1 713,431 - dcd Synpcc7942_0717 0.58 -1.5 713,431 - dcd Synpcc7942_0717 0.58 -2.1 713,437 + dcd Synpcc7942_0717 0.59 +1.7 713,445 - dcd Synpcc7942_0717 0.61 +3.0 713,447 + dcd Synpcc7942_0717 0.61 +0.3 713,453 - dcd Synpcc7942_0717 0.62 +1.4 713,456 + dcd Synpcc7942_0717 0.63 -0.7 713,472 - dcd Synpcc7942_0717 0.66 +0.8 713,473 - dcd Synpcc7942_0717 0.66 +1.4 713,479 + dcd Synpcc7942_0717 0.67 +0.1 713,489 - dcd Synpcc7942_0717 0.69 +1.0 713,510 + dcd Synpcc7942_0717 0.73 -2.3 713,510 + dcd Synpcc7942_0717 0.73 +0.7 713,518 - dcd Synpcc7942_0717 0.74 -1.3 713,518 - dcd Synpcc7942_0717 0.74 +0.5 713,558 + dcd Synpcc7942_0717 0.82 +1.7 713,563 + dcd Synpcc7942_0717 0.83 +2.6 713,568 + dcd Synpcc7942_0717 0.84 -3.9 713,572 + dcd Synpcc7942_0717 0.85 -0.3 713,577 + dcd Synpcc7942_0717 0.86 +0.8 713,582 + dcd Synpcc7942_0717 0.87 -0.0 713,582 + dcd Synpcc7942_0717 0.87 +1.0 713,582 + dcd Synpcc7942_0717 0.87 -0.7 713,582 + dcd Synpcc7942_0717 0.87 +3.1 713,582 + dcd Synpcc7942_0717 0.87 -1.7 713,582 + dcd Synpcc7942_0717 0.87 -2.9 713,590 - dcd Synpcc7942_0717 0.88 +0.5 713,590 - dcd Synpcc7942_0717 0.88 -0.7 713,590 - dcd Synpcc7942_0717 0.88 -2.3 713,590 - dcd Synpcc7942_0717 0.88 -0.1 713,719 - +0.7 713,720 + +2.6 713,754 + Synpcc7942_0718 0.12 -1.7 713,754 - Synpcc7942_0718 0.12 -0.3 713,781 + Synpcc7942_0718 0.16 -1.7 713,803 + Synpcc7942_0718 0.19 +1.2 713,822 + Synpcc7942_0718 0.22 -1.7 713,840 - Synpcc7942_0718 0.25 -1.1 713,846 + Synpcc7942_0718 0.26 +0.5 713,846 + Synpcc7942_0718 0.26 +0.3 713,847 + Synpcc7942_0718 0.26 -3.2 713,847 + Synpcc7942_0718 0.26 -1.7 713,847 + Synpcc7942_0718 0.26 -2.3 713,850 - Synpcc7942_0718 0.26 -0.7 713,851 + Synpcc7942_0718 0.26 +1.3 713,854 - Synpcc7942_0718 0.27 -0.1 713,854 - Synpcc7942_0718 0.27 +2.8 713,856 + Synpcc7942_0718 0.27 -0.6 713,886 - Synpcc7942_0718 0.32 -0.7 713,910 - Synpcc7942_0718 0.35 -1.3 713,931 - Synpcc7942_0718 0.39 +0.9 713,933 - Synpcc7942_0718 0.39 -0.2 713,943 + Synpcc7942_0718 0.41 -1.3 713,951 - Synpcc7942_0718 0.42 -0.3 713,952 + Synpcc7942_0718 0.42 -0.7 713,970 + Synpcc7942_0718 0.45 +1.3 713,978 - Synpcc7942_0718 0.46 -0.2 713,978 - Synpcc7942_0718 0.46 +0.8 713,978 - Synpcc7942_0718 0.46 -0.1 713,998 - Synpcc7942_0718 0.49 -0.2 714,013 - Synpcc7942_0718 0.51 -0.9 714,021 - Synpcc7942_0718 0.52 +1.3 714,042 + -0.7 714,058 + Synpcc7942_0718 0.58 +0.8 714,060 - Synpcc7942_0718 0.58 -1.0 714,070 + Synpcc7942_0718 0.60 +0.1 714,075 + Synpcc7942_0718 0.61 -1.3 714,075 + Synpcc7942_0718 0.61 -0.7 714,078 - Synpcc7942_0718 0.61 +0.5 714,080 + Synpcc7942_0718 0.61 -1.3 714,083 - Synpcc7942_0718 0.62 -0.5 714,083 - Synpcc7942_0718 0.62 +2.4 714,104 - Synpcc7942_0718 0.65 +1.3 714,104 - Synpcc7942_0718 0.65 +0.3 714,137 - Synpcc7942_0718 0.70 +0.6 714,143 - Synpcc7942_0718 0.71 -1.0 714,144 + Synpcc7942_0718 0.71 -0.5 714,145 - Synpcc7942_0718 0.71 +0.3 714,163 + Synpcc7942_0718 0.74 +0.3 714,167 + Synpcc7942_0718 0.75 +0.5 714,180 - Synpcc7942_0718 0.77 +3.0 714,182 + Synpcc7942_0718 0.77 +2.8 714,182 + Synpcc7942_0718 0.77 +0.1 714,205 + Synpcc7942_0718 0.81 -1.3 714,213 - Synpcc7942_0718 0.82 -0.7 714,213 - Synpcc7942_0718 0.82 -0.3 714,213 - Synpcc7942_0718 0.82 -1.6 714,221 - Synpcc7942_0718 0.83 +1.0 714,282 - -1.9 714,309 + +1.8 714,335 - -2.4 714,367 - -0.6 714,381 - Synpcc7942_0719 0.11 -1.1 714,391 - Synpcc7942_0719 0.12 +0.5 714,456 + Synpcc7942_0719 0.25 +0.7 714,469 - Synpcc7942_0719 0.28 +1.3 714,506 - Synpcc7942_0719 0.35 -0.4 714,516 - Synpcc7942_0719 0.37 +1.1 714,516 - Synpcc7942_0719 0.37 -0.5 714,519 + Synpcc7942_0719 0.38 +0.6 714,519 + Synpcc7942_0719 0.38 -0.3 714,529 + Synpcc7942_0719 0.40 -1.1 714,529 + Synpcc7942_0719 0.40 +0.8 714,537 - Synpcc7942_0719 0.41 -1.0 714,539 - +1.3 714,581 - Synpcc7942_0719 0.50 -1.1 714,671 + Synpcc7942_0719 0.68 +2.1 714,718 + Synpcc7942_0719 0.77 -1.6 714,746 + Synpcc7942_0719 0.83 -2.3 714,762 + Synpcc7942_0719 0.86 +0.9 714,763 + Synpcc7942_0719 0.86 +0.8 714,763 + Synpcc7942_0719 0.86 +0.9 714,771 - Synpcc7942_0719 0.88 +0.4 714,771 - Synpcc7942_0719 0.88 -0.7 714,773 + Synpcc7942_0719 0.88 +1.3 714,778 + Synpcc7942_0719 0.89 +2.4 714,781 - -2.1 714,781 - -2.1 714,781 - -1.7 714,783 + -1.3 714,790 + -2.1 714,793 - +1.0 714,798 - -0.2 714,803 - -2.7 714,831 + +0.3 714,831 + +1.3 714,839 - +0.0 714,839 - -0.4 714,841 + +1.5 714,844 + -1.7 714,849 + -0.7 714,880 - +1.8 714,880 - +1.8 714,882 + +0.3 714,889 - +1.4 714,904 + -1.1 714,910 + -2.3 714,912 - -1.3 714,912 - +0.7 714,915 + -2.1 714,918 - +0.3 714,923 - +0.4 714,923 - +0.3 714,923 - -0.7 714,923 - +2.3 714,925 + -0.5 714,930 + -0.9 714,933 - +1.3 714,938 - -0.7 714,948 - +3.7 714,977 - +0.1 714,979 - -1.8 714,995 - -2.3 715,006 + +1.4 715,007 + -0.7 715,018 + +1.6 715,040 - +1.7 715,056 + -0.4 715,064 - -1.0 715,064 - -0.3 715,068 + +0.3 715,125 + Synpcc7942_0720 0.22 -0.8 715,194 + Synpcc7942_0720 0.42 -3.1 715,196 - -1.7 715,202 - Synpcc7942_0720 0.45 -1.7 715,257 + Synpcc7942_0720 0.61 -1.3 715,257 + Synpcc7942_0720 0.61 +0.5 715,274 + Synpcc7942_0720 0.66 -1.7 715,284 + Synpcc7942_0720 0.69 +0.7 715,284 + Synpcc7942_0720 0.69 +0.4
Or see this region's nucleotide sequence